Wall clock time and date at job start Wed Apr 1 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 H 1.08992 * 109.47399 * 59.99666 * 4 3 2 6 6 O 1.42900 * 109.47041 * 299.99263 * 4 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 8 8 N 1.46896 * 109.47098 * 185.00074 * 7 4 3 9 9 C 1.46903 * 111.00046 * 179.97438 * 8 7 4 10 10 C 1.50701 * 109.46999 * 179.97438 * 9 8 7 11 11 C 1.33636 * 126.04051 * 89.99933 * 10 9 8 12 12 N 1.31785 * 114.50192 * 179.97438 * 11 10 9 13 13 C 1.29026 * 117.12522 * 0.02562 * 12 11 10 14 14 S 1.70979 * 110.16398 * 359.71956 * 13 12 11 15 15 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 16 16 O 1.21285 * 119.99996 * 179.97438 * 15 2 1 17 17 C 1.50698 * 120.00318 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.47250 * 179.97438 * 17 15 2 19 19 C 1.76202 * 99.99891 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.38799 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99802 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47182 * 90.00392 * 23 21 19 25 25 H 1.48504 * 109.46620 * 210.00114 * 23 21 19 26 26 H 1.48500 * 109.47275 * 329.99897 * 23 21 19 27 27 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 28 28 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 29 29 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 30 30 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 31 31 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 32 32 H 0.96698 * 114.00516 * 300.00983 * 6 4 3 33 33 H 1.09008 * 109.46864 * 304.99696 * 7 4 3 34 34 H 1.09000 * 109.47679 * 64.99728 * 7 4 3 35 35 H 1.00904 * 110.99715 * 303.94762 * 8 7 4 36 36 H 1.08991 * 109.47170 * 299.99552 * 9 8 7 37 37 H 1.09001 * 109.46877 * 59.99944 * 9 8 7 38 38 H 1.07993 * 122.74941 * 0.02562 * 11 10 9 39 39 H 1.08004 * 124.91485 * 179.97438 * 13 12 11 40 40 H 1.09006 * 109.47054 * 299.99977 * 17 15 2 41 41 H 1.09003 * 109.47164 * 59.99309 * 17 15 2 42 42 H 0.96995 * 119.99591 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0415 0.9507 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2168 3.0357 1.4425 8 7 3.5663 3.3994 2.8222 9 6 4.3034 4.6695 2.8612 10 6 4.6433 5.0093 4.2895 11 6 5.7530 4.6484 4.9409 12 7 5.8170 5.0714 6.1874 13 6 4.8229 5.7685 6.6239 14 16 3.6512 5.9591 5.3933 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3855 -2.4723 -0.0017 18 16 2.5617 -3.8480 -0.0029 19 6 1.4416 -5.2082 -0.0034 20 1 0.3764 -5.0305 -0.0033 21 6 1.9284 -6.5081 -0.0048 22 7 3.2268 -6.7246 -0.0054 23 14 0.7409 -7.9501 -0.0060 24 1 0.4260 -8.3308 -1.4064 25 1 1.3626 -9.1037 0.6927 26 1 -0.5095 -7.5622 0.6948 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6083 2.0284 -0.5138 31 1 3.1498 1.1384 -0.5139 32 1 0.6266 2.5438 1.7127 33 1 4.1276 2.9299 0.8529 34 1 2.5915 3.8159 1.0084 35 1 2.7434 3.4405 3.4047 36 1 5.2216 4.5747 2.2816 37 1 3.6859 5.4611 2.4368 38 1 6.5336 4.0592 4.4831 39 1 4.7443 6.1764 7.6209 40 1 0.7585 -2.5307 0.8881 41 1 0.7591 -2.5294 -0.8919 42 1 3.5669 -7.6330 -0.0061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284386008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:01 Heat of formation + Delta-G solvation = -62.313518 kcal Electronic energy + Delta-G solvation = -24381.805619 eV Core-core repulsion = 20614.098834 eV Total energy + Delta-G solvation = -3767.706785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98516 -40.59236 -39.01300 -36.79400 -35.95719 -34.59161 -32.77165 -31.66545 -30.00128 -28.00963 -27.69554 -27.04111 -25.53348 -24.04857 -22.75811 -21.09569 -20.72861 -19.55848 -19.04003 -18.14441 -17.85593 -17.32044 -17.03706 -16.88413 -16.67765 -16.26412 -16.05732 -15.71127 -15.37936 -15.18641 -14.88900 -14.80839 -14.55000 -14.33551 -14.22171 -13.69283 -13.53310 -13.32060 -13.18024 -13.16054 -12.97344 -12.89387 -12.69726 -12.52352 -12.19551 -12.04801 -11.72288 -11.36270 -11.14695 -10.85496 -10.64020 -10.33359 -10.27467 -9.91475 -9.56996 -9.40082 -8.67966 -8.35079 -6.13599 -0.27405 0.41455 0.76227 1.25807 1.42146 1.45795 1.56144 1.58569 1.84633 2.13601 2.27347 2.98820 3.11299 3.27503 3.46667 3.50300 3.73543 3.84059 3.92009 4.08325 4.12217 4.15568 4.22231 4.37088 4.38775 4.40255 4.48408 4.60257 4.66066 4.74983 4.81019 4.82276 4.97875 5.10930 5.17004 5.40826 5.57591 5.92241 6.19047 6.27052 6.32227 6.74398 6.89896 7.05822 7.16283 8.74232 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.001797 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.386761 B =15576.025080 C =16297.196841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.087 3.913 4 C 0.104 3.896 5 H 0.063 0.937 6 O -0.563 6.563 7 C 0.041 3.959 8 N -0.698 5.698 9 C 0.141 3.859 10 C -0.224 4.224 11 C 0.029 3.971 12 N -0.509 5.509 13 C 0.013 3.987 14 S 0.157 5.843 15 C 0.527 3.473 16 O -0.566 6.566 17 C -0.123 4.123 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.387 0.613 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.348 0.652 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.174 0.826 39 H 0.225 0.775 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 32.072 5.281 33.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C -0.036 4.036 4 C 0.044 3.956 5 H 0.081 0.919 6 O -0.370 6.370 7 C -0.088 4.088 8 N -0.331 5.331 9 C 0.011 3.989 10 C -0.346 4.346 11 C -0.122 4.122 12 N -0.223 5.223 13 C -0.284 4.284 14 S 0.409 5.591 15 C 0.315 3.685 16 O -0.444 6.444 17 C -0.274 4.274 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.236 0.764 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.167 0.833 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.191 0.809 39 H 0.242 0.758 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.566 31.555 6.007 32.601 hybrid contribution -1.520 -0.777 -0.668 1.833 sum -7.086 30.778 5.339 32.031 Atomic orbital electron populations 1.22073 0.76855 1.04785 1.02903 1.47677 1.08473 1.04415 1.72989 1.22241 0.98908 0.85320 0.97156 1.22108 0.84903 0.96405 0.92221 0.91883 1.86683 1.29030 1.64367 1.56939 1.22504 1.00646 0.95921 0.89761 1.60322 1.29571 1.32241 1.10924 1.20273 0.99985 0.90304 0.88372 1.26084 0.99111 1.06730 1.02684 1.21922 0.99351 1.01696 0.89224 1.66356 1.28095 1.13082 1.14766 1.28931 0.92640 1.00951 1.05865 1.83813 1.23433 1.47671 1.04155 1.20140 0.87303 0.85683 0.75386 1.90676 1.15595 1.87528 1.50638 1.23363 1.02686 0.95284 1.06068 1.85568 1.12751 0.97369 1.97015 1.23192 0.94595 0.92656 1.58923 0.89962 1.26159 0.97654 1.01733 0.93722 1.70188 1.14134 1.22475 1.47968 0.84937 0.77840 0.76227 0.78864 1.19141 1.20304 1.18180 0.91043 0.91708 0.87716 0.85723 0.90717 0.76401 0.89878 0.91267 0.83292 0.88491 0.91944 0.80886 0.75828 0.87977 0.87515 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 9.98 127.77 1.28 2.54 16 2 N -0.60 -15.25 2.80 -846.77 -2.37 -17.62 16 3 C 0.09 1.63 5.10 86.38 0.44 2.07 16 4 C 0.10 1.97 3.48 30.59 0.11 2.08 16 5 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 6 O -0.56 -8.94 11.58 -148.98 -1.72 -10.67 16 7 C 0.04 0.54 5.36 86.30 0.46 1.00 16 8 N -0.70 -10.86 6.49 -517.93 -3.36 -14.22 16 9 C 0.14 1.72 6.22 85.56 0.53 2.25 16 10 C -0.22 -3.39 6.11 24.64 0.15 -3.24 16 11 C 0.03 0.57 11.25 83.66 0.94 1.51 16 12 N -0.51 -10.40 10.54 -203.75 -2.15 -12.55 16 13 C 0.01 0.18 12.23 130.65 1.60 1.78 16 14 S 0.16 1.76 23.22 -56.49 -1.31 0.45 16 15 C 0.53 20.18 7.69 87.66 0.67 20.86 16 16 O -0.57 -26.74 15.44 -3.05 -0.05 -26.79 16 17 C -0.12 -5.08 4.71 71.24 0.34 -4.75 16 18 S -0.15 -8.80 20.57 -56.49 -1.16 -9.97 16 19 C -0.55 -31.76 9.50 67.95 0.65 -31.12 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 23 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.26 6.44 -2.39 -0.02 1.24 16 29 H 0.10 1.06 6.88 -2.39 -0.02 1.04 16 30 H 0.12 1.14 8.07 -2.39 -0.02 1.13 16 31 H 0.07 1.76 7.42 -2.39 -0.02 1.74 16 32 H 0.39 2.15 8.79 -74.06 -0.65 1.50 16 33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.35 5.42 8.28 -89.69 -0.74 4.68 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 38 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.10 3.94 7.40 -2.39 -0.02 3.92 16 41 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -85.69 384.33 -2.52 -88.20 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.34 Total: 17.42 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 7.63 Total: -3.86 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -7.59 Total: -100.95 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.77 Total: -37.45 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -7.05 SS G_CDS: -2.47 Total: -9.52 kcal Total: -85.69 -2.52 -88.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284386008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.890 kcal (2) G-P(sol) polarization free energy of solvation -85.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds