Wall clock time and date at job start Wed Apr 1 2020 04:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99532 * 2 1 4 4 C 1.52999 * 109.46822 * 90.00254 * 3 2 1 5 5 H 1.09001 * 109.47362 * 304.99115 * 4 3 2 6 6 O 1.42895 * 109.47283 * 64.99978 * 4 3 2 7 7 C 1.53006 * 109.46623 * 184.99666 * 4 3 2 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 4 3 9 9 C 1.46905 * 110.99800 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.47194 * 180.02562 * 9 8 7 11 11 N 1.29027 * 124.91362 * 89.69645 * 10 9 8 12 12 C 1.31784 * 117.12339 * 179.81034 * 11 10 9 13 13 C 1.33642 * 114.50047 * 0.47684 * 12 11 10 14 14 S 1.70973 * 124.91808 * 269.99993 * 10 9 8 15 15 C 1.34770 * 120.00213 * 180.02562 * 2 1 3 16 16 O 1.21277 * 119.99939 * 180.02562 * 15 2 1 17 17 C 1.50707 * 119.99962 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46995 * 180.02562 * 17 15 2 19 19 C 1.76194 * 99.99965 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00290 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99693 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47222 * 60.00016 * 23 21 19 25 25 H 1.48507 * 109.46866 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47313 * 299.99882 * 23 21 19 27 27 H 1.09002 * 109.46895 * 90.00642 * 1 2 3 28 28 H 1.09001 * 109.47092 * 209.99641 * 1 2 3 29 29 H 1.08994 * 109.47361 * 329.99603 * 1 2 3 30 30 H 1.08994 * 109.47386 * 329.99855 * 3 2 1 31 31 H 1.08998 * 109.46411 * 210.00178 * 3 2 1 32 32 H 0.96695 * 114.00385 * 60.00116 * 6 4 3 33 33 H 1.08993 * 109.46955 * 300.00075 * 7 4 3 34 34 H 1.09000 * 109.47050 * 59.99904 * 7 4 3 35 35 H 1.00904 * 111.00423 * 303.95194 * 8 7 4 36 36 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 37 37 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 38 38 H 1.07996 * 122.74997 * 180.22496 * 12 11 10 39 39 H 1.07996 * 126.04102 * 179.71380 * 13 12 11 40 40 H 1.08993 * 109.47260 * 300.00412 * 17 15 2 41 41 H 1.09000 * 109.46934 * 60.00674 * 17 15 2 42 42 H 0.96999 * 120.00467 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5061 1.7550 1.9816 6 8 3.3209 0.7726 2.0813 7 6 3.1060 3.0939 1.4443 8 7 3.3502 3.5181 2.8293 9 6 3.9779 4.8457 2.8703 10 6 4.2132 5.2461 4.3040 11 7 5.2827 4.9862 4.9773 12 6 5.3270 5.4135 6.2232 13 6 4.2299 6.0616 6.6261 14 16 3.0986 6.1041 5.2759 15 6 2.1389 -1.1671 -0.0005 16 8 3.3517 -1.1671 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4418 -5.2082 -0.0013 20 1 0.3765 -5.0305 -0.0020 21 6 1.9285 -6.5081 -0.0010 22 7 3.2268 -6.7246 -0.0006 23 14 0.7411 -7.9500 -0.0025 24 1 -0.1127 -7.8869 -1.2160 25 1 1.5073 -9.2222 -0.0025 26 1 -0.1154 -7.8874 1.2091 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1498 1.1384 -0.5139 32 1 4.1836 0.6812 1.6543 33 1 4.0522 3.0494 0.9052 34 1 2.4435 3.8093 0.9570 35 1 2.4967 3.5054 3.3674 36 1 4.9305 4.8137 2.3414 37 1 3.3213 5.5729 2.3927 38 1 6.1783 5.2496 6.8671 39 1 4.0655 6.4841 7.6063 40 1 0.7591 -2.5303 0.8896 41 1 0.7586 -2.5299 -0.8903 42 1 3.5671 -7.6329 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332475047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:12 Heat of formation + Delta-G solvation = -27.926890 kcal Electronic energy + Delta-G solvation = -24459.017275 eV Core-core repulsion = 20692.801606 eV Total energy + Delta-G solvation = -3766.215669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.02698 -39.63017 -37.80737 -35.76452 -34.89522 -32.38855 -31.72538 -30.53147 -28.92679 -27.54217 -26.41422 -25.46920 -24.52435 -23.34101 -21.87283 -20.37796 -19.27667 -18.43342 -17.65105 -16.99103 -16.72199 -16.18350 -15.85419 -15.76134 -15.43094 -15.14454 -14.87736 -14.76751 -14.32511 -14.15174 -13.88144 -13.81306 -13.26708 -13.05061 -12.86403 -12.55239 -12.54645 -12.35084 -12.22168 -11.93081 -11.83349 -11.68599 -11.11545 -11.00951 -11.00221 -10.73219 -10.16317 -9.97226 -9.81024 -9.77250 -9.38268 -9.28409 -9.01985 -8.81619 -8.41091 -8.17378 -6.44313 -6.17368 -3.87204 0.28749 0.94605 1.32558 2.45727 2.94070 3.15204 3.26004 3.28229 3.31617 3.56600 3.67857 3.90423 4.24493 4.46389 4.57924 4.58052 4.77213 4.80660 4.87316 4.96478 5.03331 5.09314 5.11976 5.17414 5.18568 5.20636 5.34526 5.39378 5.55489 5.62827 5.71066 5.74785 5.94949 5.97824 6.18921 6.42071 6.65217 6.87332 7.39758 7.56736 7.63147 7.92088 8.38887 8.64697 9.27592 10.89985 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.001779 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.608760 B =15736.880502 C =16311.579992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.621 5.621 3 C 0.087 3.913 4 C 0.096 3.904 5 H 0.092 0.908 6 O -0.535 6.535 7 C 0.030 3.970 8 N -0.668 5.668 9 C 0.135 3.865 10 C 0.055 3.945 11 N -0.455 5.455 12 C 0.040 3.960 13 C -0.257 4.257 14 S 0.111 5.889 15 C 0.540 3.460 16 O -0.511 6.511 17 C -0.149 4.149 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.380 0.620 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.343 0.657 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 30.265 6.745 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.357 5.357 3 C -0.037 4.037 4 C 0.034 3.966 5 H 0.110 0.890 6 O -0.340 6.340 7 C -0.101 4.101 8 N -0.301 5.301 9 C 0.003 3.997 10 C -0.223 4.223 11 N -0.169 5.169 12 C -0.111 4.111 13 C -0.396 4.396 14 S 0.364 5.636 15 C 0.328 3.672 16 O -0.385 6.385 17 C -0.300 4.300 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.228 0.772 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.194 0.806 39 H 0.195 0.805 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.011 29.823 6.762 30.728 hybrid contribution -1.897 -0.288 0.145 1.925 sum -4.909 29.535 6.907 30.727 Atomic orbital electron populations 1.21749 0.79811 1.03069 1.01585 1.47694 1.06554 1.05361 1.76077 1.22048 0.98891 0.85961 0.96849 1.22252 0.94104 0.86865 0.93388 0.89024 1.86618 1.29479 1.61804 1.56097 1.22706 1.01263 0.96949 0.89134 1.60237 1.32118 1.24998 1.12710 1.20474 1.01597 0.90081 0.87554 1.26975 0.92918 1.01008 1.01439 1.66232 1.24264 1.19734 1.06710 1.21907 0.99354 0.97987 0.91817 1.27114 0.97820 1.10414 1.04254 1.84008 1.21931 1.52782 1.04899 1.20214 0.87905 0.84353 0.74716 1.90643 1.13703 1.86648 1.47486 1.23541 1.04554 0.97414 1.04481 1.85376 1.07975 0.93207 1.96668 1.22828 0.94300 0.92318 1.58946 0.91070 1.24985 0.95655 0.98344 0.94608 1.70006 1.11720 1.21713 1.46830 0.86238 0.80215 0.80360 0.78757 1.19990 1.20826 1.19952 0.92789 0.90609 0.91690 0.90326 0.89354 0.77210 0.89892 0.94165 0.83872 0.87788 0.92977 0.80554 0.80478 0.89365 0.89552 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.24 59.85 0.61 1.43 16 2 N -0.62 -8.44 2.86 -181.57 -0.52 -8.96 16 3 C 0.09 0.92 5.11 -4.04 -0.02 0.90 16 4 C 0.10 0.98 3.42 -26.73 -0.09 0.89 16 5 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 6 O -0.53 -7.94 12.07 -42.98 -0.52 -8.46 16 7 C 0.03 0.23 5.35 -3.82 -0.02 0.21 16 8 N -0.67 -5.87 6.36 -115.05 -0.73 -6.60 16 9 C 0.14 1.02 6.26 -4.97 -0.03 0.99 16 10 C 0.06 0.50 6.90 -13.46 -0.09 0.41 16 11 N -0.46 -4.98 10.54 -11.86 -0.13 -5.10 16 12 C 0.04 0.35 11.35 -19.18 -0.22 0.13 16 13 C -0.26 -1.75 11.37 29.12 0.33 -1.41 16 14 S 0.11 0.76 23.18 -107.50 -2.49 -1.73 16 15 C 0.54 10.21 7.32 -10.98 -0.08 10.13 16 16 O -0.51 -11.27 14.42 -2.19 -0.03 -11.30 16 17 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.46 9.50 30.94 0.29 -15.17 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 29 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.38 5.42 8.75 45.56 0.40 5.82 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.34 2.84 8.72 -39.29 -0.34 2.50 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.09 1.73 7.40 -51.92 -0.38 1.35 16 41 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -37.16 385.18 -9.59 -46.75 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.23 Total: 4.95 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.64 Total: -46.40 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.55 Total: -19.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -4.70 Total: -5.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.16 -9.59 -46.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332475047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.827 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds