Wall clock time and date at job start Wed Apr 1 2020 04:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99532 * 2 1 4 4 C 1.52999 * 109.46822 * 90.00254 * 3 2 1 5 5 H 1.09001 * 109.47362 * 304.99115 * 4 3 2 6 6 O 1.42895 * 109.47283 * 64.99978 * 4 3 2 7 7 C 1.53006 * 109.46623 * 184.99666 * 4 3 2 8 8 N 1.46902 * 109.46626 * 179.97438 * 7 4 3 9 9 C 1.46905 * 110.99800 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.47194 * 180.02562 * 9 8 7 11 11 N 1.29027 * 124.91362 * 89.69645 * 10 9 8 12 12 C 1.31784 * 117.12339 * 179.81034 * 11 10 9 13 13 C 1.33642 * 114.50047 * 0.47684 * 12 11 10 14 14 S 1.70973 * 124.91808 * 269.99993 * 10 9 8 15 15 C 1.34770 * 120.00213 * 180.02562 * 2 1 3 16 16 O 1.21277 * 119.99939 * 180.02562 * 15 2 1 17 17 C 1.50707 * 119.99962 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46995 * 180.02562 * 17 15 2 19 19 C 1.76194 * 99.99965 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00290 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99693 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47222 * 60.00016 * 23 21 19 25 25 H 1.48507 * 109.46866 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47313 * 299.99882 * 23 21 19 27 27 H 1.09002 * 109.46895 * 90.00642 * 1 2 3 28 28 H 1.09001 * 109.47092 * 209.99641 * 1 2 3 29 29 H 1.08994 * 109.47361 * 329.99603 * 1 2 3 30 30 H 1.08994 * 109.47386 * 329.99855 * 3 2 1 31 31 H 1.08998 * 109.46411 * 210.00178 * 3 2 1 32 32 H 0.96695 * 114.00385 * 60.00116 * 6 4 3 33 33 H 1.08993 * 109.46955 * 300.00075 * 7 4 3 34 34 H 1.09000 * 109.47050 * 59.99904 * 7 4 3 35 35 H 1.00904 * 111.00423 * 303.95194 * 8 7 4 36 36 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 37 37 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 38 38 H 1.07996 * 122.74997 * 180.22496 * 12 11 10 39 39 H 1.07996 * 126.04102 * 179.71380 * 13 12 11 40 40 H 1.08993 * 109.47260 * 300.00412 * 17 15 2 41 41 H 1.09000 * 109.46934 * 60.00674 * 17 15 2 42 42 H 0.96999 * 120.00467 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5061 1.7550 1.9816 6 8 3.3209 0.7726 2.0813 7 6 3.1060 3.0939 1.4443 8 7 3.3502 3.5181 2.8293 9 6 3.9779 4.8457 2.8703 10 6 4.2132 5.2461 4.3040 11 7 5.2827 4.9862 4.9773 12 6 5.3270 5.4135 6.2232 13 6 4.2299 6.0616 6.6261 14 16 3.0986 6.1041 5.2759 15 6 2.1389 -1.1671 -0.0005 16 8 3.3517 -1.1671 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4418 -5.2082 -0.0013 20 1 0.3765 -5.0305 -0.0020 21 6 1.9285 -6.5081 -0.0010 22 7 3.2268 -6.7246 -0.0006 23 14 0.7411 -7.9500 -0.0025 24 1 -0.1127 -7.8869 -1.2160 25 1 1.5073 -9.2222 -0.0025 26 1 -0.1154 -7.8874 1.2091 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1498 1.1384 -0.5139 32 1 4.1836 0.6812 1.6543 33 1 4.0522 3.0494 0.9052 34 1 2.4435 3.8093 0.9570 35 1 2.4967 3.5054 3.3674 36 1 4.9305 4.8137 2.3414 37 1 3.3213 5.5729 2.3927 38 1 6.1783 5.2496 6.8671 39 1 4.0655 6.4841 7.6063 40 1 0.7591 -2.5303 0.8896 41 1 0.7586 -2.5299 -0.8903 42 1 3.5671 -7.6329 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332475047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:11 Heat of formation + Delta-G solvation = -58.077222 kcal Electronic energy + Delta-G solvation = -24460.324691 eV Core-core repulsion = 20692.801606 eV Total energy + Delta-G solvation = -3767.523086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89578 -40.60460 -38.76202 -36.63496 -36.01389 -34.57734 -32.51521 -31.56063 -30.04999 -28.36124 -27.67639 -27.24597 -25.35465 -23.98938 -22.69426 -20.97645 -20.66602 -19.53166 -19.01024 -18.12012 -17.79200 -17.08761 -16.93099 -16.86416 -16.55493 -16.30292 -16.09649 -15.75401 -15.56074 -15.23440 -14.75594 -14.54943 -14.41761 -14.35122 -14.13725 -13.73874 -13.44872 -13.21599 -13.16080 -13.10107 -12.88020 -12.85896 -12.66758 -12.50753 -12.46473 -11.97781 -11.71961 -11.14546 -11.12128 -10.76142 -10.59139 -10.39037 -10.24736 -9.93190 -9.52277 -9.36168 -8.64789 -8.33474 -6.11259 -0.28045 0.41154 0.76333 1.27716 1.43951 1.47020 1.56747 1.69539 1.84990 2.18186 2.29480 3.00022 3.01050 3.27415 3.31999 3.66657 3.81694 3.86987 4.00805 4.13784 4.23204 4.24866 4.32830 4.37687 4.39973 4.46049 4.49854 4.54718 4.61700 4.64662 4.70939 4.81163 4.95355 5.13952 5.18909 5.41569 5.60231 5.89449 6.20023 6.29338 6.33481 6.82357 6.89925 7.07172 7.26586 8.75499 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.001779 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.608760 B =15736.880502 C =16311.579992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.609 5.609 3 C 0.086 3.914 4 C 0.095 3.905 5 H 0.100 0.900 6 O -0.567 6.567 7 C 0.040 3.960 8 N -0.689 5.689 9 C 0.138 3.862 10 C 0.032 3.968 11 N -0.498 5.498 12 C 0.014 3.986 13 C -0.252 4.252 14 S 0.151 5.849 15 C 0.534 3.466 16 O -0.554 6.554 17 C -0.124 4.124 18 S -0.150 6.150 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.376 0.624 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.345 0.655 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.189 0.811 39 H 0.205 0.795 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 32.235 6.791 33.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C -0.038 4.038 4 C 0.035 3.965 5 H 0.117 0.883 6 O -0.372 6.372 7 C -0.089 4.089 8 N -0.322 5.322 9 C 0.007 3.993 10 C -0.245 4.245 11 N -0.213 5.213 12 C -0.136 4.136 13 C -0.391 4.391 14 S 0.404 5.596 15 C 0.321 3.679 16 O -0.432 6.432 17 C -0.275 4.275 18 S 0.077 5.923 19 C -0.696 4.696 20 H 0.099 0.901 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.187 1.187 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.223 0.777 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.206 0.794 39 H 0.222 0.778 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.344 31.853 6.802 33.183 hybrid contribution -0.957 -0.709 0.172 1.203 sum -7.301 31.145 6.973 32.740 Atomic orbital electron populations 1.22074 0.77203 1.04549 1.03271 1.47682 1.08198 1.04646 1.73706 1.22287 0.98750 0.85291 0.97432 1.22412 0.93843 0.87464 0.92803 0.88256 1.86576 1.29822 1.63578 1.57272 1.22561 1.01538 0.95886 0.88958 1.60157 1.32518 1.26134 1.13429 1.20487 1.01585 0.90157 0.87117 1.27231 0.93376 1.01693 1.02248 1.66234 1.25869 1.21208 1.08023 1.22187 1.00706 0.99067 0.91649 1.27512 0.97101 1.09098 1.05413 1.83782 1.20576 1.51334 1.03933 1.19952 0.87351 0.85306 0.75242 1.90630 1.15339 1.87303 1.49932 1.23368 1.02734 0.95661 1.05745 1.85540 1.12595 0.97182 1.96982 1.23173 0.94626 0.92807 1.58956 0.90072 1.26147 0.97638 1.01709 0.93761 1.70180 1.14122 1.22502 1.47936 0.85005 0.77608 0.75869 0.79511 1.18525 1.20345 1.18712 0.90927 0.91513 0.87968 0.85698 0.91117 0.77651 0.90392 0.90743 0.83638 0.88857 0.90237 0.79441 0.77768 0.88257 0.87840 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.24 127.77 1.31 2.48 16 2 N -0.61 -15.34 2.86 -846.75 -2.42 -17.76 16 3 C 0.09 1.61 5.11 86.38 0.44 2.05 16 4 C 0.10 1.80 3.42 30.60 0.10 1.90 16 5 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 6 O -0.57 -17.16 12.07 -141.57 -1.71 -18.87 16 7 C 0.04 0.53 5.35 86.31 0.46 0.99 16 8 N -0.69 -11.28 6.36 -517.91 -3.29 -14.57 16 9 C 0.14 1.93 6.26 85.56 0.54 2.47 16 10 C 0.03 0.56 6.90 88.52 0.61 1.17 16 11 N -0.50 -11.01 10.54 -191.45 -2.02 -13.03 16 12 C 0.01 0.24 11.35 83.66 0.95 1.19 16 13 C -0.25 -3.04 11.37 66.78 0.76 -2.28 16 14 S 0.15 1.79 23.18 -56.49 -1.31 0.48 16 15 C 0.53 20.22 7.32 87.66 0.64 20.86 16 16 O -0.55 -25.38 14.42 4.38 0.06 -25.31 16 17 C -0.12 -5.14 4.71 71.24 0.34 -4.80 16 18 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 19 C -0.55 -32.01 9.50 67.96 0.65 -31.36 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -57.03 13.22 21.65 0.29 -56.74 16 23 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.26 6.44 -2.39 -0.02 1.24 16 29 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 30 H 0.13 1.24 8.07 -2.39 -0.02 1.22 16 31 H 0.07 1.64 7.42 -2.39 -0.02 1.62 16 32 H 0.38 11.49 8.75 -74.06 -0.65 10.84 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.34 5.17 8.72 -89.69 -0.78 4.39 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.10 3.86 7.40 -2.40 -0.02 3.84 16 41 H 0.10 3.88 8.11 -2.39 -0.02 3.86 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -85.45 385.18 -2.65 -88.10 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.38 Total: 25.29 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 7.26 Total: -4.15 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -7.44 Total: -102.10 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.65 Total: -44.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -2.47 Total: -9.27 kcal Total: -85.45 -2.65 -88.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332475047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.023 kcal (2) G-P(sol) polarization free energy of solvation -85.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds