Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.53006 * 109.46821 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46987 * 64.99970 * 4 3 2 6 6 C 1.42905 * 113.99591 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46988 * 180.02562 * 6 5 4 8 8 S 1.81396 * 109.47134 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54412 * 73.33823 * 8 7 6 10 10 O 1.42103 * 110.54283 * 296.58617 * 8 7 6 11 11 N 1.65601 * 104.44871 * 184.96171 * 8 7 6 12 12 C 1.39774 * 120.00321 * 297.58257 * 11 8 7 13 13 C 1.38949 * 120.00830 * 134.83335 * 12 11 8 14 14 C 1.38013 * 119.99381 * 180.02562 * 13 12 11 15 15 C 1.38899 * 120.00414 * 0.02562 * 14 13 12 16 16 O 1.35803 * 119.98774 * 179.97438 * 15 14 13 17 17 C 1.34806 * 117.00271 * 5.47342 * 16 15 14 18 18 H 1.07999 * 120.00046 * 354.91430 * 17 16 15 19 19 C 1.38619 * 120.00097 * 174.91074 * 17 16 15 20 20 N 1.31581 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47138 * 120.00294 * 21 19 17 24 24 H 1.48503 * 109.46849 * 239.99877 * 21 19 17 25 25 C 1.38890 * 120.01604 * 0.25329 * 15 14 13 26 26 C 1.38013 * 120.00504 * 359.44952 * 25 15 14 27 27 H 1.08996 * 109.46955 * 299.99769 * 1 2 3 28 28 H 1.09005 * 109.47084 * 59.99706 * 1 2 3 29 29 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46657 * 60.00464 * 3 2 1 31 31 H 1.08999 * 109.47074 * 300.00128 * 3 2 1 32 32 H 1.09002 * 109.46952 * 305.00219 * 4 3 2 33 33 H 1.09000 * 109.46938 * 184.99869 * 4 3 2 34 34 H 1.08997 * 109.47023 * 59.99952 * 6 5 4 35 35 H 1.09008 * 109.46918 * 299.99875 * 6 5 4 36 36 H 1.08999 * 109.47166 * 59.99560 * 7 6 5 37 37 H 1.09003 * 109.47223 * 299.99927 * 7 6 5 38 38 H 0.97003 * 119.99861 * 117.58029 * 11 8 7 39 39 H 1.08000 * 120.00067 * 0.02562 * 13 12 11 40 40 H 1.07995 * 119.99564 * 180.02562 * 14 13 12 41 41 H 0.97001 * 120.00584 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.00172 * 179.70127 * 25 15 14 43 43 H 1.08004 * 120.00658 * 180.27174 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3812 0.4201 -1.3250 7 6 5.7247 -0.2331 -2.6653 8 16 7.5226 -0.4349 -2.7965 9 8 7.9697 -1.4846 -1.9494 10 8 8.1678 0.8312 -2.7970 11 7 7.7624 -1.0161 -4.3285 12 6 7.2250 -2.2520 -4.6993 13 6 6.5739 -2.3888 -5.9191 14 6 6.0429 -3.6091 -6.2847 15 6 6.1590 -4.7003 -5.4331 16 8 5.6359 -5.9008 -5.7929 17 6 5.1183 -5.9956 -7.0340 18 1 5.0574 -5.1192 -7.6621 19 6 4.6642 -7.2181 -7.5041 20 7 4.7390 -8.2861 -6.7391 21 14 3.9476 -7.3497 -9.2242 22 1 3.9766 -6.0157 -9.8758 23 1 4.7514 -8.3091 -10.0232 24 1 2.5445 -7.8289 -9.1405 25 6 6.8047 -4.5624 -4.2112 26 6 7.3413 -3.3439 -3.8478 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 5.7358 -0.2120 -0.5109 35 1 5.8622 1.3963 -1.2632 36 1 5.3700 0.3993 -3.4792 37 1 5.2436 -1.2092 -2.7277 38 1 8.2759 -0.4988 -4.9686 39 1 6.4833 -1.5403 -6.5810 40 1 5.5371 -3.7156 -7.2329 41 1 4.4216 -9.1416 -7.0681 42 1 6.8906 -5.4098 -3.5472 43 1 7.8473 -3.2378 -2.8995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335697862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = -155.807750 kcal Electronic energy + Delta-G solvation = -27455.621365 eV Core-core repulsion = 23208.814744 eV Total energy + Delta-G solvation = -4246.806621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.24240 -38.81481 -37.55130 -37.41814 -36.91916 -36.03313 -33.91434 -32.49577 -32.21592 -30.31267 -29.94530 -27.57435 -26.54614 -25.34850 -23.72970 -22.92277 -22.23018 -21.46637 -19.39462 -18.34172 -17.77932 -17.54181 -17.21299 -17.11580 -16.64833 -16.29409 -16.08537 -15.65311 -15.42142 -15.14193 -14.65788 -14.49857 -14.09412 -13.81941 -13.75351 -13.63739 -13.03047 -12.94958 -12.75414 -12.52858 -12.25557 -12.21371 -12.09374 -12.00831 -11.82283 -11.64044 -11.58447 -11.44054 -11.27725 -11.14415 -11.00208 -10.63985 -10.46659 -10.02733 -9.97316 -9.95014 -9.38181 -8.84699 -8.34559 -7.14202 -6.52486 -4.10220 0.10742 2.08186 2.13322 2.62173 3.08331 3.09914 3.15584 3.22383 3.44613 3.75984 3.90568 4.15014 4.34424 4.40921 4.58421 4.66968 4.80557 4.85886 4.96042 5.01083 5.02678 5.09231 5.12830 5.23082 5.23225 5.35684 5.43149 5.44174 5.53810 5.61735 5.74555 6.09948 6.27351 6.51043 6.73196 6.74415 6.87694 6.89483 6.99404 7.17625 7.24811 7.34704 7.71977 7.91729 8.92607 9.60831 10.64932 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008802 B = 0.002774 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.248375 B =10091.242826 C =12470.137117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.062 3.938 4 C 0.057 3.943 5 O -0.368 6.368 6 C 0.078 3.922 7 C -0.633 4.633 8 S 2.615 3.385 9 O -0.945 6.945 10 O -0.964 6.964 11 N -1.039 6.039 12 C 0.022 3.978 13 C -0.073 4.073 14 C -0.223 4.223 15 C 0.151 3.849 16 O -0.171 6.171 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.173 4.173 26 C -0.100 4.100 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.418 0.582 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.125 0.875 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 19.649 9.946 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.019 4.019 5 O -0.287 6.287 6 C -0.001 4.001 7 C -0.761 4.761 8 S 2.707 3.293 9 O -0.935 6.935 10 O -0.954 6.954 11 N -0.792 5.792 12 C -0.073 4.073 13 C -0.095 4.095 14 C -0.243 4.243 15 C 0.096 3.904 16 O -0.074 6.074 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.193 4.193 26 C -0.121 4.121 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.254 0.746 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.540 19.081 10.698 22.023 hybrid contribution -0.966 0.461 -1.448 1.801 sum -3.506 19.543 9.250 21.904 Atomic orbital electron populations 1.22764 0.80904 1.03127 0.99771 1.87995 1.19733 1.27019 1.95350 1.22553 0.92161 0.85777 1.00939 1.22616 0.93711 0.97760 0.87851 1.88035 1.20562 1.82152 1.37949 1.21994 0.83973 0.99516 0.94580 1.30767 1.28051 1.11904 1.05334 1.05092 0.76828 0.73752 0.73593 1.93575 1.78161 1.55683 1.66081 1.93582 1.72632 1.43384 1.85815 1.52762 1.65542 1.27471 1.33452 1.16926 1.07152 0.84463 0.98784 1.20720 0.96247 0.97093 0.95444 1.21060 1.08038 0.92657 1.02540 1.19485 0.91216 0.86614 0.93078 1.83994 1.64317 1.26472 1.32595 1.21398 1.40029 0.96426 0.88969 0.88832 1.25322 0.97114 0.94156 0.99934 1.70056 1.43021 0.99761 1.36344 0.85626 0.78650 0.78910 0.80110 1.19050 1.20082 1.20090 1.20161 1.04510 0.97866 0.96760 1.21441 0.99250 0.90814 1.00611 0.94234 0.93961 0.89358 0.91689 0.92309 0.91933 0.91432 0.91700 0.91836 0.84223 0.83482 0.74588 0.86840 0.84994 0.91906 0.85697 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.33 10.67 -40.08 -0.43 -4.76 16 3 C 0.06 0.53 6.32 37.16 0.23 0.76 16 4 C 0.06 0.51 6.32 37.16 0.23 0.74 16 5 O -0.37 -4.45 10.31 -40.08 -0.41 -4.86 16 6 C 0.08 0.83 5.95 37.16 0.22 1.05 16 7 C -0.63 -7.03 6.33 37.16 0.24 -6.79 16 8 S 2.62 32.61 5.36 -107.50 -0.58 32.04 16 9 O -0.95 -14.51 15.07 -57.54 -0.87 -15.38 16 10 O -0.96 -13.47 18.08 -57.54 -1.04 -14.51 16 11 N -1.04 -13.25 5.68 32.45 0.18 -13.07 16 12 C 0.02 0.35 6.07 -83.71 -0.51 -0.16 16 13 C -0.07 -1.22 9.96 -39.40 -0.39 -1.61 16 14 C -0.22 -4.50 9.16 -39.42 -0.36 -4.86 16 15 C 0.15 3.48 6.65 -39.10 -0.26 3.22 16 16 O -0.17 -4.71 9.76 -0.05 0.00 -4.71 16 17 C -0.39 -10.54 9.48 30.87 0.29 -10.25 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 21 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.17 -3.56 9.98 -39.42 -0.39 -3.95 16 26 C -0.10 -1.80 9.22 -39.40 -0.36 -2.17 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.14 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.15 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.42 4.34 8.92 -34.47 -0.31 4.04 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.65 5.63 -52.49 -0.30 2.36 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 43 H 0.15 2.56 5.54 -52.48 -0.29 2.27 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -34.99 380.68 -7.51 -42.50 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.80 Total: 7.61 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.70 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.94 Total: -36.84 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -2.75 Total: -44.21 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 32.61 SS G_CDS: -0.58 Total: 32.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.99 -7.51 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335697862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.309 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds