Wall clock time and date at job start Wed Apr 1 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.53006 * 109.46821 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46987 * 64.99970 * 4 3 2 6 6 C 1.42905 * 113.99591 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46988 * 180.02562 * 6 5 4 8 8 S 1.81396 * 109.47134 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54412 * 73.33823 * 8 7 6 10 10 O 1.42103 * 110.54283 * 296.58617 * 8 7 6 11 11 N 1.65601 * 104.44871 * 184.96171 * 8 7 6 12 12 C 1.39774 * 120.00321 * 297.58257 * 11 8 7 13 13 C 1.38949 * 120.00830 * 134.83335 * 12 11 8 14 14 C 1.38013 * 119.99381 * 180.02562 * 13 12 11 15 15 C 1.38899 * 120.00414 * 0.02562 * 14 13 12 16 16 O 1.35803 * 119.98774 * 179.97438 * 15 14 13 17 17 C 1.34806 * 117.00271 * 5.47342 * 16 15 14 18 18 H 1.07999 * 120.00046 * 354.91430 * 17 16 15 19 19 C 1.38619 * 120.00097 * 174.91074 * 17 16 15 20 20 N 1.31581 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46836 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47138 * 120.00294 * 21 19 17 24 24 H 1.48503 * 109.46849 * 239.99877 * 21 19 17 25 25 C 1.38890 * 120.01604 * 0.25329 * 15 14 13 26 26 C 1.38013 * 120.00504 * 359.44952 * 25 15 14 27 27 H 1.08996 * 109.46955 * 299.99769 * 1 2 3 28 28 H 1.09005 * 109.47084 * 59.99706 * 1 2 3 29 29 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46657 * 60.00464 * 3 2 1 31 31 H 1.08999 * 109.47074 * 300.00128 * 3 2 1 32 32 H 1.09002 * 109.46952 * 305.00219 * 4 3 2 33 33 H 1.09000 * 109.46938 * 184.99869 * 4 3 2 34 34 H 1.08997 * 109.47023 * 59.99952 * 6 5 4 35 35 H 1.09008 * 109.46918 * 299.99875 * 6 5 4 36 36 H 1.08999 * 109.47166 * 59.99560 * 7 6 5 37 37 H 1.09003 * 109.47223 * 299.99927 * 7 6 5 38 38 H 0.97003 * 119.99861 * 117.58029 * 11 8 7 39 39 H 1.08000 * 120.00067 * 0.02562 * 13 12 11 40 40 H 1.07995 * 119.99564 * 180.02562 * 14 13 12 41 41 H 0.97001 * 120.00584 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.00172 * 179.70127 * 25 15 14 43 43 H 1.08004 * 120.00658 * 180.27174 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 6 5.3812 0.4201 -1.3250 7 6 5.7247 -0.2331 -2.6653 8 16 7.5226 -0.4349 -2.7965 9 8 7.9697 -1.4846 -1.9494 10 8 8.1678 0.8312 -2.7970 11 7 7.7624 -1.0161 -4.3285 12 6 7.2250 -2.2520 -4.6993 13 6 6.5739 -2.3888 -5.9191 14 6 6.0429 -3.6091 -6.2847 15 6 6.1590 -4.7003 -5.4331 16 8 5.6359 -5.9008 -5.7929 17 6 5.1183 -5.9956 -7.0340 18 1 5.0574 -5.1192 -7.6621 19 6 4.6642 -7.2181 -7.5041 20 7 4.7390 -8.2861 -6.7391 21 14 3.9476 -7.3497 -9.2242 22 1 3.9766 -6.0157 -9.8758 23 1 4.7514 -8.3091 -10.0232 24 1 2.5445 -7.8289 -9.1405 25 6 6.8047 -4.5624 -4.2112 26 6 7.3413 -3.3439 -3.8478 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 5.7358 -0.2120 -0.5109 35 1 5.8622 1.3963 -1.2632 36 1 5.3700 0.3993 -3.4792 37 1 5.2436 -1.2092 -2.7277 38 1 8.2759 -0.4988 -4.9686 39 1 6.4833 -1.5403 -6.5810 40 1 5.5371 -3.7156 -7.2329 41 1 4.4216 -9.1416 -7.0681 42 1 6.8906 -5.4098 -3.5472 43 1 7.8473 -3.2378 -2.8995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335697862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:41 Heat of formation + Delta-G solvation = -183.372122 kcal Electronic energy + Delta-G solvation = -27456.816646 eV Core-core repulsion = 23208.814744 eV Total energy + Delta-G solvation = -4248.001902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87758 -39.54194 -38.91529 -38.29185 -38.18497 -37.17675 -35.36620 -34.08418 -33.30018 -31.87068 -30.65204 -29.13217 -27.22516 -27.17156 -24.59750 -23.79971 -23.56596 -22.99934 -20.58943 -19.92512 -19.05167 -18.82506 -18.42066 -17.94334 -17.88159 -17.20991 -16.96083 -16.41085 -16.36984 -16.21514 -16.19855 -16.05292 -15.54085 -15.25641 -14.84360 -14.61898 -14.53872 -14.45269 -13.93398 -13.66987 -13.40492 -13.32335 -13.31239 -13.08771 -12.93799 -12.81257 -12.75381 -12.69609 -12.36271 -12.24120 -12.15157 -12.06387 -11.92150 -11.44764 -11.05444 -10.74143 -10.68221 -10.64389 -9.88028 -8.76506 -8.45093 -6.12359 -0.95315 0.51280 0.59234 1.38579 1.46153 1.53666 1.56625 2.19338 2.37780 2.76644 2.83828 2.86853 3.11621 3.15829 3.50419 3.52243 3.72464 4.02489 4.05231 4.13648 4.18994 4.19481 4.21255 4.39578 4.44542 4.46415 4.52200 4.55080 4.56127 4.68001 4.73765 4.78300 4.85269 5.03512 5.13011 5.25638 5.40678 5.59800 5.68048 5.94656 6.03664 6.04062 6.24819 6.26483 6.99579 7.79054 8.77996 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008802 B = 0.002774 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.248375 B =10091.242826 C =12470.137117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.047 3.953 5 O -0.395 6.395 6 C 0.065 3.935 7 C -0.624 4.624 8 S 2.637 3.363 9 O -0.975 6.975 10 O -0.970 6.970 11 N -1.035 6.035 12 C 0.059 3.941 13 C -0.065 4.065 14 C -0.223 4.223 15 C 0.114 3.886 16 O -0.228 6.228 17 C -0.411 4.411 18 H 0.108 0.892 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.247 1.247 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.183 4.183 26 C -0.104 4.104 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.434 0.566 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 23.640 9.510 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.020 4.020 4 C -0.029 4.029 5 O -0.314 6.314 6 C -0.013 4.013 7 C -0.754 4.754 8 S 2.732 3.268 9 O -0.965 6.965 10 O -0.961 6.961 11 N -0.789 5.789 12 C -0.037 4.037 13 C -0.086 4.086 14 C -0.243 4.243 15 C 0.062 3.938 16 O -0.134 6.134 17 C -0.487 4.487 18 H 0.126 0.874 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.170 1.170 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.203 4.203 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.273 0.727 39 H 0.177 0.823 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.438 23.144 10.270 25.437 hybrid contribution -0.841 -0.368 -1.041 1.388 sum -3.279 22.776 9.229 24.792 Atomic orbital electron populations 1.22893 0.79639 1.03491 1.00990 1.87938 1.21394 1.28978 1.95630 1.22771 0.91888 0.84962 1.02341 1.22917 0.94186 0.99119 0.86676 1.87987 1.21053 1.82846 1.39561 1.22201 0.83982 1.00950 0.94198 1.30634 1.25587 1.12130 1.07001 1.04260 0.77103 0.72871 0.72614 1.93540 1.79375 1.56819 1.66741 1.93580 1.73397 1.43408 1.85687 1.52704 1.65844 1.26310 1.34004 1.16943 1.04142 0.85017 0.97600 1.21073 0.94574 0.96993 0.95972 1.21209 1.07949 0.93117 1.02036 1.19964 0.92636 0.86608 0.94555 1.83968 1.67233 1.28835 1.33381 1.21913 1.40119 0.97267 0.89397 0.87449 1.26597 0.97521 0.93518 1.04497 1.70205 1.46108 1.00551 1.38974 0.84522 0.77629 0.79646 0.74385 1.17028 1.19644 1.19623 1.20297 1.04781 0.98976 0.96238 1.21598 0.98945 0.90427 1.01468 0.92240 0.93463 0.89559 0.88874 0.92193 0.91954 0.88455 0.91235 0.89410 0.82087 0.84416 0.72706 0.82342 0.85069 0.91884 0.86378 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.14 10.67 -144.34 -1.54 -10.68 16 3 C 0.06 0.84 6.32 71.98 0.45 1.30 16 4 C 0.05 0.73 6.32 71.98 0.45 1.18 16 5 O -0.39 -8.72 10.31 -144.34 -1.49 -10.21 16 6 C 0.06 1.20 5.95 71.98 0.43 1.63 16 7 C -0.62 -11.98 6.33 71.98 0.46 -11.52 16 8 S 2.64 57.65 5.36 -56.49 -0.30 57.35 16 9 O -0.97 -27.91 15.07 -127.65 -1.92 -29.83 16 10 O -0.97 -23.63 18.08 -127.65 -2.31 -25.94 16 11 N -1.03 -22.44 5.68 -51.26 -0.29 -22.73 16 12 C 0.06 1.72 6.07 38.22 0.23 1.95 16 13 C -0.06 -1.95 9.96 22.39 0.22 -1.73 16 14 C -0.22 -8.85 9.16 22.37 0.20 -8.65 16 15 C 0.11 5.42 6.65 22.58 0.15 5.57 16 16 O -0.23 -13.30 9.76 -23.08 -0.23 -13.53 16 17 C -0.41 -23.03 9.48 67.91 0.64 -22.39 16 18 H 0.11 5.40 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.32 5.49 84.82 0.47 -0.85 16 20 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 21 Si 1.02 41.65 29.55 68.60 2.03 43.67 16 22 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 C -0.18 -7.74 9.98 22.37 0.22 -7.51 16 26 C -0.10 -3.61 9.22 22.39 0.21 -3.41 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.43 7.02 8.92 -96.74 -0.86 6.16 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.13 5.19 5.63 -2.91 -0.02 5.17 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.16 5.26 5.54 -2.91 -0.02 5.25 16 Total: -1.00 -80.22 380.68 -0.19 -80.41 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.18 Total: 29.71 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 5.39 Total: -42.80 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: 0.00 Total: -78.16 kcal Atomic # 8 Polarization: -82.70 SS G_CDS: -7.48 Total: -90.18 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 57.65 SS G_CDS: -0.30 Total: 57.35 kcal Total: -80.22 -0.19 -80.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335697862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.964 kcal (2) G-P(sol) polarization free energy of solvation -80.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds