Wall clock time and date at job start Wed Apr 1 2020 04:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00343 * 2 1 4 4 H 1.48496 * 109.47236 * 270.00186 * 3 2 1 5 5 H 1.48501 * 109.46779 * 30.00414 * 3 2 1 6 6 H 1.48501 * 109.46954 * 149.99950 * 3 2 1 7 7 C 1.37877 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00181 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97638 * 124.97814 * 10 9 7 12 12 C 1.35239 * 107.85956 * 179.74845 * 11 10 9 13 13 C 1.40410 * 107.86797 * 0.39098 * 12 11 10 14 14 N 1.40158 * 125.97127 * 179.86633 * 13 12 11 15 15 C 1.34777 * 120.00060 * 359.43692 * 14 13 12 16 16 O 1.21293 * 120.00229 * 0.28031 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27594 * 15 14 13 18 18 H 1.09003 * 109.70601 * 55.59155 * 17 15 14 19 19 C 1.53479 * 109.70947 * 295.00661 * 17 15 14 20 20 O 1.43174 * 108.24079 * 180.53894 * 19 17 15 21 21 C 1.36206 * 116.72004 * 46.13597 * 20 19 17 22 22 C 1.38681 * 119.33967 * 162.94530 * 21 20 19 23 23 C 1.38170 * 120.14918 * 179.83130 * 22 21 20 24 24 C 1.38710 * 120.04880 * 359.97438 * 23 22 21 25 25 O 1.35979 * 119.99698 * 180.08792 * 24 23 22 26 26 C 1.38605 * 119.99484 * 0.06623 * 24 23 22 27 27 C 1.38690 * 120.02837 * 359.97438 * 26 24 23 28 28 O 1.36119 * 119.33339 * 179.81876 * 27 26 24 29 29 N 1.31217 * 108.05400 * 359.60296 * 13 12 11 30 30 H 0.97008 * 119.99800 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46599 * 59.99408 * 9 7 2 32 32 H 1.08995 * 109.46786 * 300.00029 * 9 7 2 33 33 H 1.08003 * 126.06975 * 359.97438 * 11 10 9 34 34 H 1.07998 * 126.06387 * 180.23462 * 12 11 10 35 35 H 0.97001 * 120.00153 * 179.72004 * 14 13 12 36 36 H 1.09006 * 109.70512 * 300.21715 * 19 17 15 37 37 H 1.08988 * 109.71305 * 60.80544 * 19 17 15 38 38 H 1.08009 * 119.92562 * 359.83956 * 22 21 20 39 39 H 1.07991 * 119.97874 * 179.97438 * 23 22 21 40 40 H 0.96699 * 113.99446 * 269.97306 * 25 24 23 41 41 H 1.07999 * 119.98545 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 2.2414 -4.6227 0.8931 12 6 3.2566 -5.4459 0.5457 13 6 3.8688 -4.9148 -0.6009 14 7 4.9646 -5.4658 -1.2792 15 6 5.5321 -6.6031 -0.8310 16 8 5.0914 -7.1526 0.1564 17 6 6.7143 -7.1922 -1.5566 18 1 7.5076 -6.4484 -1.6313 19 6 6.2890 -7.6383 -2.9623 20 8 7.4298 -8.2031 -3.6175 21 6 8.1743 -9.0875 -2.8971 22 6 9.0580 -9.9280 -3.5574 23 6 9.8239 -10.8290 -2.8429 24 6 9.7112 -10.8948 -1.4619 25 8 10.4668 -11.7807 -0.7596 26 6 8.8286 -10.0572 -0.7980 27 6 8.0585 -9.1528 -1.5138 28 8 7.1937 -8.3396 -0.8478 29 7 3.2321 -3.8156 -0.9297 30 1 -0.4850 0.8401 -0.0004 31 1 0.6245 -2.5562 -0.8919 32 1 0.6239 -2.5575 0.8880 33 1 1.5769 -4.7525 1.7346 34 1 3.5466 -6.3499 1.0605 35 1 5.3171 -5.0263 -2.0688 36 1 5.5001 -8.3868 -2.8874 37 1 5.9279 -6.7790 -3.5271 38 1 9.1477 -9.8780 -4.6326 39 1 10.5108 -11.4825 -3.3598 40 1 10.0485 -12.6439 -0.6370 41 1 8.7407 -10.1089 0.2771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361912109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:35 Heat of formation + Delta-G solvation = -50.582000 kcal Electronic energy + Delta-G solvation = -28546.244147 eV Core-core repulsion = 24200.849256 eV Total energy + Delta-G solvation = -4345.394891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74525 -42.17243 -40.72603 -39.70784 -38.41625 -36.94317 -36.38285 -35.35960 -33.25327 -32.15885 -31.41144 -30.98900 -29.37422 -28.52340 -26.54671 -25.07342 -24.02628 -23.56986 -22.40647 -21.81690 -21.08364 -20.11437 -19.35085 -18.89207 -18.69768 -18.30965 -18.08385 -17.26047 -17.03249 -16.87332 -16.49514 -16.26597 -15.89921 -15.86266 -15.76016 -15.46454 -15.21794 -14.96503 -14.67648 -14.41055 -14.24818 -14.04000 -13.88477 -13.70333 -13.35617 -12.96185 -12.75565 -12.57053 -12.31122 -12.14140 -12.04466 -11.94406 -11.72076 -11.59142 -11.43849 -11.01737 -10.72796 -9.83543 -9.75122 -9.21449 -9.10539 -8.33965 -6.47636 0.08736 0.15189 0.73138 0.88062 1.28916 1.38506 1.39575 1.50390 1.79923 1.93269 2.08023 2.31629 2.41129 2.49293 2.93325 2.98461 3.19705 3.32896 3.44841 3.58156 3.91012 3.99146 4.09194 4.20599 4.21286 4.31493 4.36190 4.63221 4.70491 4.84684 4.89886 4.92777 4.99910 5.04545 5.05687 5.32068 5.43017 5.55783 5.67734 5.78342 5.80657 6.08507 6.19666 6.23876 6.62975 6.76912 6.83828 6.98617 7.22362 8.73817 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.001872 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.921327 B =14954.512512 C =15314.409042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.295 4.295 13 C 0.265 3.735 14 N -0.611 5.611 15 C 0.536 3.464 16 O -0.523 6.523 17 C 0.048 3.952 18 H 0.141 0.859 19 C 0.035 3.965 20 O -0.299 6.299 21 C 0.024 3.976 22 C -0.092 4.092 23 C -0.133 4.133 24 C 0.114 3.886 25 O -0.502 6.502 26 C -0.155 4.155 27 C 0.052 3.948 28 O -0.303 6.303 29 N -0.336 5.336 30 H 0.272 0.728 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.202 0.798 34 H 0.165 0.835 35 H 0.430 0.570 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.413 0.587 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.118 -22.420 -7.513 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.153 3.847 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.326 4.326 13 C 0.011 3.989 14 N -0.262 5.262 15 C 0.321 3.679 16 O -0.395 6.395 17 C -0.012 4.012 18 H 0.159 0.841 19 C -0.041 4.041 20 O -0.213 6.213 21 C -0.021 4.021 22 C -0.110 4.110 23 C -0.151 4.151 24 C 0.069 3.931 25 O -0.316 6.316 26 C -0.174 4.174 27 C 0.007 3.993 28 O -0.217 6.217 29 N -0.167 5.167 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.219 0.781 34 H 0.183 0.817 35 H 0.269 0.731 36 H 0.103 0.897 37 H 0.181 0.819 38 H 0.182 0.818 39 H 0.184 0.816 40 H 0.273 0.727 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.850 -21.174 -7.598 28.717 hybrid contribution -0.333 0.361 0.602 0.777 sum 17.517 -20.813 -6.996 28.089 Atomic orbital electron populations 1.69993 1.07182 1.28759 1.49894 1.25726 0.95838 1.02697 0.93929 0.85353 0.78339 0.78197 0.78564 1.19728 1.19852 1.19785 1.21395 0.93411 0.90909 1.52842 0.92839 1.19378 0.85646 0.81406 0.98304 1.48873 1.23718 1.20259 1.19413 1.23168 1.00413 0.88677 0.96683 1.21699 1.02323 1.06518 1.02071 1.19266 0.91525 0.93446 0.94650 1.42167 1.28712 1.24645 1.30696 1.20025 0.83589 0.79746 0.84581 1.90696 1.62255 1.60358 1.26235 1.22845 0.96420 0.89324 0.92652 0.84135 1.23769 0.87225 1.02175 0.90919 1.86381 1.39087 1.56335 1.39496 1.19183 0.98200 0.96037 0.88643 1.20640 0.95267 0.93279 1.01806 1.21506 1.00673 1.00397 0.92519 1.18057 0.91748 0.93278 0.89978 1.84814 1.44286 1.27320 1.75151 1.20782 0.96624 0.98682 1.01306 1.18892 0.94918 0.95514 0.89954 1.86334 1.59439 1.35480 1.40439 1.77264 1.04462 1.17673 1.17276 0.91849 0.95764 0.92294 0.78144 0.81742 0.73083 0.89676 0.81934 0.81848 0.81594 0.72704 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 2 C 0.02 1.01 5.46 84.65 0.46 1.47 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -30.18 9.24 25.60 0.24 -29.94 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 9 C 0.27 13.68 6.26 85.64 0.54 14.22 16 10 N -0.34 -15.41 3.67 -351.85 -1.29 -16.70 16 11 C 0.06 2.25 11.43 83.52 0.96 3.21 16 12 C -0.30 -11.09 9.61 22.11 0.21 -10.88 16 13 C 0.27 9.89 8.11 133.33 1.08 10.97 16 14 N -0.61 -16.23 5.42 -307.51 -1.67 -17.90 16 15 C 0.54 14.05 7.17 87.66 0.63 14.67 16 16 O -0.52 -18.02 13.65 15.78 0.22 -17.80 16 17 C 0.05 0.93 3.43 30.01 0.10 1.03 16 18 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 19 C 0.03 0.52 6.52 72.14 0.47 0.99 16 20 O -0.30 -5.11 10.42 -83.69 -0.87 -5.98 16 21 C 0.02 0.44 6.49 22.55 0.15 0.59 16 22 C -0.09 -1.22 9.95 22.36 0.22 -1.00 16 23 C -0.13 -1.56 9.98 22.37 0.22 -1.34 16 24 C 0.11 1.72 6.70 22.47 0.15 1.87 16 25 O -0.50 -6.09 13.50 -93.31 -1.26 -7.35 16 26 C -0.15 -2.98 9.90 22.47 0.22 -2.76 16 27 C 0.05 1.12 6.49 22.55 0.15 1.26 16 28 O -0.30 -7.54 9.61 -69.13 -0.66 -8.20 16 29 N -0.34 -14.76 12.42 -54.45 -0.68 -15.44 16 30 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 33 H 0.20 6.02 8.06 -2.91 -0.02 5.99 16 34 H 0.17 6.06 5.92 -2.91 -0.02 6.04 16 35 H 0.43 8.20 8.67 -92.71 -0.80 7.40 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.16 1.35 7.99 -2.39 -0.02 1.33 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.17 1.02 8.06 -2.92 -0.02 1.00 16 40 H 0.41 0.92 9.06 -74.06 -0.67 0.25 16 41 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -75.66 362.08 1.54 -74.13 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.36 Total: 16.96 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.80 Total: 4.36 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -3.35 Total: -101.01 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -2.58 Total: -39.34 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -75.66 1.54 -74.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361912109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.543 kcal (2) G-P(sol) polarization free energy of solvation -75.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds