Wall clock time and date at job start Wed Apr 1 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30866 * 126.20517 * 2 1 4 4 C 1.34563 * 107.29270 * 180.23110 * 3 2 1 5 5 C 1.47833 * 126.02438 * 179.73019 * 4 3 2 6 6 O 1.21568 * 120.00202 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00128 * 0.02725 * 5 4 3 8 8 C 1.46500 * 120.00310 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46576 * 35.00257 * 8 7 5 10 10 C 1.50694 * 109.47101 * 155.00086 * 8 7 5 11 11 H 1.08003 * 120.00257 * 114.77298 * 10 8 7 12 12 C 1.37886 * 120.00443 * 294.76683 * 10 8 7 13 13 N 1.31506 * 120.00367 * 184.89319 * 12 10 8 14 14 Si 1.86799 * 119.99447 * 4.89446 * 12 10 8 15 15 H 1.48503 * 109.47215 * 84.90777 * 14 12 10 16 16 H 1.48504 * 109.46968 * 204.90431 * 14 12 10 17 17 H 1.48500 * 109.47545 * 324.90727 * 14 12 10 18 18 C 1.52999 * 109.47601 * 275.00332 * 8 7 5 19 19 F 1.39902 * 109.46693 * 65.01095 * 18 8 7 20 20 F 1.39900 * 109.47394 * 185.01237 * 18 8 7 21 21 F 1.39903 * 109.46963 * 305.01693 * 18 8 7 22 22 N 1.31558 * 107.95504 * 359.75689 * 4 3 2 23 23 N 1.28857 * 108.70890 * 359.97438 * 22 4 3 24 24 C 1.40100 * 125.77129 * 179.97438 * 23 22 4 25 25 N 1.33623 * 125.60098 * 0.03501 * 24 23 22 26 26 C 1.30801 * 109.79294 * 179.97438 * 25 24 23 27 27 N 1.34427 * 108.19598 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.77033 * 179.97438 * 27 26 25 29 29 N 1.31150 * 125.59134 * 179.72213 * 24 23 22 30 30 H 1.08991 * 109.47311 * 270.17703 * 1 2 3 31 31 H 1.09000 * 109.47251 * 30.18756 * 1 2 3 32 32 H 1.09009 * 109.46773 * 150.18200 * 1 2 3 33 33 H 0.97000 * 119.99925 * 0.02562 * 7 5 4 34 34 H 0.97002 * 119.99860 * 179.97438 * 13 12 10 35 35 H 1.08001 * 125.89953 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6198 -0.0052 5 6 4.7630 1.4691 -0.0127 6 8 5.8654 0.9566 -0.0174 7 7 4.6441 2.8116 -0.0144 8 6 5.8432 3.6532 -0.0213 9 1 6.6214 3.1719 -0.6136 10 6 5.5118 4.9947 -0.6224 11 1 5.5611 5.8860 -0.0144 12 6 5.1457 5.0846 -1.9487 13 7 4.9500 6.2630 -2.4986 14 14 4.9276 3.5321 -2.9645 15 1 3.5553 3.0001 -2.7671 16 1 5.1344 3.8473 -4.4009 17 1 5.9197 2.5148 -2.5331 18 6 6.3396 3.8457 1.4131 19 9 6.7548 2.6145 1.9319 20 9 7.4149 4.7405 1.4183 21 9 5.3028 4.3577 2.2006 22 7 3.5310 -0.6956 -0.0029 23 7 2.3038 -1.0884 0.0039 24 6 1.8705 -2.4207 0.0078 25 7 2.6630 -3.4965 0.0056 26 6 1.9349 -4.5831 0.0110 27 7 0.6403 -4.2209 0.0163 28 1 -0.1282 -4.8127 0.0207 29 7 0.6202 -2.8167 0.0200 30 1 -0.3633 0.0032 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5111 33 1 3.7645 3.2205 -0.0103 34 1 4.6929 6.3261 -3.4318 35 1 2.3091 -5.5962 0.0112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363576053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:03 Heat of formation + Delta-G solvation = 15.960039 kcal Electronic energy + Delta-G solvation = -30416.191066 eV Core-core repulsion = 25460.577322 eV Total energy + Delta-G solvation = -4955.613744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.04467 -46.55611 -46.52547 -43.83864 -42.69931 -38.95628 -35.07330 -34.95090 -33.49063 -32.84109 -32.45224 -31.19655 -29.27238 -28.31353 -25.15960 -24.97278 -24.15293 -22.34872 -21.45296 -20.59964 -20.05291 -19.16078 -18.41393 -17.79729 -17.49930 -17.35666 -16.94222 -16.51539 -16.29081 -15.77874 -15.51598 -15.25680 -14.51072 -14.08167 -13.98424 -13.49110 -13.43382 -13.38086 -13.21723 -12.99333 -12.93508 -12.72622 -12.72021 -12.62339 -12.58906 -11.95563 -11.82902 -11.58510 -11.06921 -10.80948 -10.79183 -10.65759 -10.54286 -10.19161 -10.12036 -9.91442 -9.72741 -9.39949 -8.95707 -8.48195 -6.47782 -4.61914 0.46118 1.11907 1.33984 2.00466 2.20820 2.49526 3.12706 3.23303 3.29246 3.36365 3.59873 3.65370 3.83297 3.94012 4.01930 4.17197 4.47109 4.74327 4.98802 5.00716 5.10497 5.22014 5.23390 5.25912 5.34371 5.44065 5.59349 5.90917 6.10581 6.31643 6.37517 6.43545 6.90787 7.01510 7.18736 7.80784 7.93522 8.25726 8.53458 8.68036 9.06081 10.60102 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003544 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.552811 B = 7898.037282 C = 8669.260881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.244 3.756 3 N -0.463 5.463 4 C 0.171 3.829 5 C 0.597 3.403 6 O -0.508 6.508 7 N -0.694 5.694 8 C 0.203 3.797 9 H 0.096 0.904 10 C -0.535 4.535 11 H 0.099 0.901 12 C 0.101 3.899 13 N -0.859 5.859 14 Si 0.868 3.132 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.256 1.256 18 C 0.443 3.557 19 F -0.193 7.193 20 F -0.181 7.181 21 F -0.188 7.188 22 N -0.229 5.229 23 N -0.236 5.236 24 C 0.465 3.535 25 N -0.518 5.518 26 C 0.292 3.708 27 N -0.469 5.469 28 H 0.452 0.548 29 N -0.297 5.297 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.275 0.725 35 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -20.594 3.882 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 N -0.189 5.189 4 C -0.110 4.110 5 C 0.378 3.622 6 O -0.381 6.381 7 N -0.349 5.349 8 C 0.101 3.899 9 H 0.114 0.886 10 C -0.573 4.573 11 H 0.117 0.883 12 C -0.109 4.109 13 N -0.491 5.491 14 Si 0.694 3.306 15 H -0.191 1.191 16 H -0.212 1.212 17 H -0.180 1.180 18 C 0.388 3.612 19 F -0.174 7.174 20 F -0.163 7.163 21 F -0.170 7.170 22 N -0.063 5.063 23 N -0.030 5.030 24 C 0.096 3.904 25 N -0.247 5.247 26 C -0.007 4.007 27 N -0.189 5.189 28 H 0.300 0.700 29 N -0.132 5.132 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -12.222 -20.297 3.749 23.988 hybrid contribution -1.160 -1.348 -0.349 1.813 sum -13.382 -21.646 3.400 25.674 Atomic orbital electron populations 1.20508 0.82255 1.05514 1.04964 1.25329 0.97869 0.80481 0.99433 1.71471 1.00549 1.26653 1.20199 1.24436 0.93425 0.88463 1.04725 1.16714 0.84835 0.82707 0.77974 1.90823 1.24867 1.73649 1.48714 1.47521 1.12370 1.03539 1.71430 1.20463 0.87599 0.94311 0.87550 0.88613 1.20790 1.49981 0.89870 0.96631 0.88349 1.24875 0.92590 0.96409 0.97031 1.69854 1.41982 1.23458 1.13846 0.86967 0.80617 0.83601 0.79400 1.19078 1.21181 1.17993 1.21381 0.75297 0.73006 0.91554 1.93158 1.90788 1.44241 1.89237 1.93115 1.57172 1.68984 1.97016 1.93093 1.58918 1.87430 1.77529 1.74729 0.98865 1.13781 1.18928 1.43205 1.04734 1.02486 1.52571 1.19374 0.87187 0.83879 0.99984 1.70373 1.33974 0.95837 1.24523 1.26288 0.80368 1.00135 0.93936 1.48028 1.09674 1.04310 1.56920 0.70040 1.78235 1.15812 0.89820 1.29370 0.88743 0.87900 0.88675 0.75019 0.91457 0.74467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 9.84 36.01 0.35 -0.35 16 2 C 0.24 3.73 7.94 -155.24 -1.23 2.50 16 3 N -0.46 -8.61 11.09 -8.47 -0.09 -8.70 16 4 C 0.17 3.61 7.96 -156.31 -1.24 2.37 16 5 C 0.60 13.85 7.03 -12.34 -0.09 13.77 16 6 O -0.51 -12.89 15.65 5.31 0.08 -12.81 16 7 N -0.69 -15.83 2.88 -55.88 -0.16 -15.99 16 8 C 0.20 4.90 1.42 -69.09 -0.10 4.80 16 9 H 0.10 2.41 6.52 -51.93 -0.34 2.07 16 10 C -0.54 -14.06 8.65 -34.44 -0.30 -14.36 16 11 H 0.10 2.77 7.95 -52.48 -0.42 2.36 16 12 C 0.10 2.70 5.47 -17.82 -0.10 2.60 16 13 N -0.86 -24.04 13.96 55.43 0.77 -23.27 16 14 Si 0.87 21.09 25.78 -169.99 -4.38 16.71 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.26 -6.41 6.57 56.52 0.37 -6.04 16 18 C 0.44 10.17 2.79 37.16 0.10 10.28 16 19 F -0.19 -4.42 15.83 2.25 0.04 -4.39 16 20 F -0.18 -4.13 16.86 2.25 0.04 -4.09 16 21 F -0.19 -4.20 16.97 2.25 0.04 -4.16 16 22 N -0.23 -4.64 12.03 32.08 0.39 -4.25 16 23 N -0.24 -3.93 3.52 -10.92 -0.04 -3.96 16 24 C 0.47 6.22 8.74 -320.54 -2.80 3.42 16 25 N -0.52 -6.28 11.20 -14.87 -0.17 -6.44 16 26 C 0.29 1.55 13.12 -90.68 -1.19 0.36 16 27 N -0.47 -2.11 7.44 29.52 0.22 -1.89 16 28 H 0.45 -0.06 8.96 -182.34 -1.63 -1.69 16 29 N -0.30 -2.82 10.41 30.08 0.31 -2.50 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.81 6.33 -51.92 -0.33 0.48 16 33 H 0.41 8.96 8.29 -40.82 -0.34 8.62 16 34 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.24 -0.14 8.06 -52.49 -0.42 -0.57 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -36.87 328.07 -8.09 -44.96 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.49 Total: 0.48 kcal Atomic # 6 Polarization: 31.97 SS G_CDS: -6.59 Total: 25.38 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: 1.23 Total: -67.02 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 0.11 Total: -12.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.38 Total: 16.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.87 -8.09 -44.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363576053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.918 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds