Wall clock time and date at job start Wed Apr 1 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30866 * 126.20517 * 2 1 4 4 C 1.34563 * 107.29270 * 180.23110 * 3 2 1 5 5 C 1.47833 * 126.02438 * 179.73019 * 4 3 2 6 6 O 1.21568 * 120.00202 * 180.02562 * 5 4 3 7 7 N 1.34772 * 120.00128 * 0.02725 * 5 4 3 8 8 C 1.46500 * 120.00310 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46576 * 35.00257 * 8 7 5 10 10 C 1.50694 * 109.47101 * 155.00086 * 8 7 5 11 11 H 1.08003 * 120.00257 * 114.77298 * 10 8 7 12 12 C 1.37886 * 120.00443 * 294.76683 * 10 8 7 13 13 N 1.31506 * 120.00367 * 184.89319 * 12 10 8 14 14 Si 1.86799 * 119.99447 * 4.89446 * 12 10 8 15 15 H 1.48503 * 109.47215 * 84.90777 * 14 12 10 16 16 H 1.48504 * 109.46968 * 204.90431 * 14 12 10 17 17 H 1.48500 * 109.47545 * 324.90727 * 14 12 10 18 18 C 1.52999 * 109.47601 * 275.00332 * 8 7 5 19 19 F 1.39902 * 109.46693 * 65.01095 * 18 8 7 20 20 F 1.39900 * 109.47394 * 185.01237 * 18 8 7 21 21 F 1.39903 * 109.46963 * 305.01693 * 18 8 7 22 22 N 1.31558 * 107.95504 * 359.75689 * 4 3 2 23 23 N 1.28857 * 108.70890 * 359.97438 * 22 4 3 24 24 C 1.40100 * 125.77129 * 179.97438 * 23 22 4 25 25 N 1.33623 * 125.60098 * 0.03501 * 24 23 22 26 26 C 1.30801 * 109.79294 * 179.97438 * 25 24 23 27 27 N 1.34427 * 108.19598 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.77033 * 179.97438 * 27 26 25 29 29 N 1.31150 * 125.59134 * 179.72213 * 24 23 22 30 30 H 1.08991 * 109.47311 * 270.17703 * 1 2 3 31 31 H 1.09000 * 109.47251 * 30.18756 * 1 2 3 32 32 H 1.09009 * 109.46773 * 150.18200 * 1 2 3 33 33 H 0.97000 * 119.99925 * 0.02562 * 7 5 4 34 34 H 0.97002 * 119.99860 * 179.97438 * 13 12 10 35 35 H 1.08001 * 125.89953 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6198 -0.0052 5 6 4.7630 1.4691 -0.0127 6 8 5.8654 0.9566 -0.0174 7 7 4.6441 2.8116 -0.0144 8 6 5.8432 3.6532 -0.0213 9 1 6.6214 3.1719 -0.6136 10 6 5.5118 4.9947 -0.6224 11 1 5.5611 5.8860 -0.0144 12 6 5.1457 5.0846 -1.9487 13 7 4.9500 6.2630 -2.4986 14 14 4.9276 3.5321 -2.9645 15 1 3.5553 3.0001 -2.7671 16 1 5.1344 3.8473 -4.4009 17 1 5.9197 2.5148 -2.5331 18 6 6.3396 3.8457 1.4131 19 9 6.7548 2.6145 1.9319 20 9 7.4149 4.7405 1.4183 21 9 5.3028 4.3577 2.2006 22 7 3.5310 -0.6956 -0.0029 23 7 2.3038 -1.0884 0.0039 24 6 1.8705 -2.4207 0.0078 25 7 2.6630 -3.4965 0.0056 26 6 1.9349 -4.5831 0.0110 27 7 0.6403 -4.2209 0.0163 28 1 -0.1282 -4.8127 0.0207 29 7 0.6202 -2.8167 0.0200 30 1 -0.3633 0.0032 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8917 -0.5111 33 1 3.7645 3.2205 -0.0103 34 1 4.6929 6.3261 -3.4318 35 1 2.3091 -5.5962 0.0112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363576053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:02 Heat of formation + Delta-G solvation = -8.704994 kcal Electronic energy + Delta-G solvation = -30417.260622 eV Core-core repulsion = 25460.577322 eV Total energy + Delta-G solvation = -4956.683300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.92563 -48.43555 -48.39609 -45.07460 -43.41378 -40.79004 -36.88485 -36.17342 -34.63089 -34.50157 -33.55215 -32.13347 -31.05684 -29.35369 -27.01173 -26.55899 -24.96783 -23.45097 -23.01067 -21.95870 -21.52047 -20.23668 -19.84666 -19.40101 -19.12038 -18.73088 -18.48500 -18.38471 -17.88783 -17.11325 -16.62870 -16.27991 -16.03792 -15.76197 -15.42645 -15.30747 -15.23058 -14.88087 -14.86498 -14.64712 -14.59634 -14.53283 -14.16003 -14.03737 -13.73126 -13.56516 -13.03068 -12.90796 -12.74973 -12.59641 -12.18289 -11.94702 -11.89694 -11.68521 -11.52353 -11.48042 -11.20012 -11.03315 -10.54441 -10.32086 -8.57585 -6.74879 -0.54700 0.17856 0.36907 0.74006 1.22310 1.28571 1.38979 1.56033 1.65065 1.75036 1.86119 2.08333 2.17336 2.59852 2.71671 2.96083 3.07714 3.15477 3.31430 3.43769 3.65917 3.76995 4.28017 4.41261 4.51721 4.52554 4.56734 4.65455 4.86874 4.88663 4.97663 5.12847 5.40623 5.82291 5.98622 6.24189 6.40110 6.49787 6.77204 6.87754 6.95964 8.54508 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.003544 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.552811 B = 7898.037282 C = 8669.260881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.254 3.746 3 N -0.486 5.486 4 C 0.145 3.855 5 C 0.600 3.400 6 O -0.538 6.538 7 N -0.690 5.690 8 C 0.209 3.791 9 H 0.086 0.914 10 C -0.536 4.536 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.892 5.892 14 Si 0.914 3.086 15 H -0.257 1.257 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.448 3.552 19 F -0.191 7.191 20 F -0.180 7.180 21 F -0.183 7.183 22 N -0.251 5.251 23 N -0.235 5.235 24 C 0.425 3.575 25 N -0.576 5.576 26 C 0.317 3.683 27 N -0.441 5.441 28 H 0.475 0.525 29 N -0.289 5.289 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.282 0.718 35 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 -23.648 3.870 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 N -0.212 5.212 4 C -0.136 4.136 5 C 0.382 3.618 6 O -0.412 6.412 7 N -0.345 5.345 8 C 0.106 3.894 9 H 0.104 0.896 10 C -0.574 4.574 11 H 0.093 0.907 12 C -0.134 4.134 13 N -0.526 5.526 14 Si 0.739 3.261 15 H -0.182 1.182 16 H -0.203 1.203 17 H -0.195 1.195 18 C 0.393 3.607 19 F -0.172 7.172 20 F -0.161 7.161 21 F -0.165 7.165 22 N -0.088 5.088 23 N -0.028 5.028 24 C 0.056 3.944 25 N -0.307 5.307 26 C 0.020 3.980 27 N -0.164 5.164 28 H 0.328 0.672 29 N -0.126 5.126 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.256 0.744 34 H 0.092 0.908 35 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -14.837 -23.396 3.741 27.956 hybrid contribution -0.511 -0.645 -0.278 0.868 sum -15.348 -24.041 3.463 28.732 Atomic orbital electron populations 1.20807 0.78266 1.06869 1.06786 1.26253 0.99518 0.79372 0.96968 1.71406 0.99745 1.28348 1.21743 1.23816 0.93534 0.88715 1.07539 1.16838 0.85382 0.82612 0.76953 1.90787 1.26309 1.74129 1.50001 1.47134 1.12024 1.03698 1.71631 1.20181 0.87767 0.93356 0.88121 0.89608 1.20715 1.50092 0.90010 0.96610 0.90670 1.25309 0.92345 0.98084 0.97696 1.69901 1.43326 1.24797 1.14597 0.86258 0.80460 0.80689 0.78695 1.18197 1.20277 1.19502 1.21140 0.75401 0.73089 0.91104 1.93163 1.90769 1.44179 1.89128 1.93117 1.57090 1.68930 1.96993 1.93100 1.58717 1.87357 1.77290 1.74570 1.01437 1.13466 1.19346 1.43286 1.03674 1.04411 1.51392 1.19484 0.88508 0.82985 1.03374 1.70281 1.36402 0.97132 1.26849 1.27270 0.79654 1.00553 0.90555 1.47996 1.10820 1.02707 1.54894 0.67182 1.78118 1.14039 0.92501 1.27914 0.86442 0.86540 0.87139 0.74359 0.90838 0.68869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 9.84 71.24 0.70 -0.43 16 2 C 0.25 7.47 7.94 138.07 1.10 8.56 16 3 N -0.49 -17.96 11.09 -180.72 -2.00 -19.96 16 4 C 0.14 6.20 7.96 137.10 1.09 7.29 16 5 C 0.60 28.38 7.03 86.78 0.61 28.99 16 6 O -0.54 -27.97 15.65 -3.93 -0.06 -28.04 16 7 N -0.69 -31.95 2.88 -448.99 -1.29 -33.24 16 8 C 0.21 10.26 1.42 44.24 0.06 10.32 16 9 H 0.09 4.41 6.52 -2.38 -0.02 4.40 16 10 C -0.54 -28.72 8.65 25.60 0.22 -28.50 16 11 H 0.08 4.34 7.95 -2.91 -0.02 4.32 16 12 C 0.07 3.94 5.47 84.66 0.46 4.40 16 13 N -0.89 -50.37 13.96 21.45 0.30 -50.07 16 14 Si 0.91 43.88 25.78 68.60 1.77 45.65 16 15 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -13.57 6.57 99.48 0.65 -12.92 16 18 C 0.45 20.79 2.79 71.98 0.20 20.99 16 19 F -0.19 -8.84 15.83 44.97 0.71 -8.12 16 20 F -0.18 -8.26 16.86 44.97 0.76 -7.50 16 21 F -0.18 -8.21 16.97 44.97 0.76 -7.45 16 22 N -0.25 -10.34 12.03 -52.43 -0.63 -10.97 16 23 N -0.23 -7.66 3.52 -188.46 -0.66 -8.33 16 24 C 0.43 10.68 8.74 260.69 2.28 12.96 16 25 N -0.58 -12.87 11.20 -200.96 -2.25 -15.13 16 26 C 0.32 2.12 13.12 180.37 2.37 4.48 16 27 N -0.44 -2.13 7.44 -60.51 -0.45 -2.58 16 28 H 0.47 -2.45 8.96 -213.10 -1.91 -4.36 16 29 N -0.29 -4.61 10.41 -58.75 -0.61 -5.22 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.51 6.33 -2.38 -0.02 1.50 16 33 H 0.42 18.39 8.29 -92.71 -0.77 17.63 16 34 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.30 -2.02 8.06 -2.91 -0.02 -2.04 16 Total: -1.00 -83.58 328.07 3.93 -79.65 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -1.50 Total: 2.24 kcal Atomic # 6 Polarization: 59.98 SS G_CDS: 9.09 Total: 69.07 kcal Atomic # 7 Polarization: -137.89 SS G_CDS: -7.60 Total: -145.49 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.04 kcal Atomic # 9 Polarization: -25.31 SS G_CDS: 2.23 Total: -23.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.77 Total: 45.65 kcal Total: -83.58 3.93 -79.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363576053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.947 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds