Wall clock time and date at job start Wed Apr 1 2020 04:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48496 * 109.47057 * 270.00583 * 3 2 1 5 5 H 1.48497 * 109.46793 * 30.00167 * 3 2 1 6 6 H 1.48495 * 109.47072 * 150.00357 * 3 2 1 7 7 C 1.37883 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99884 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47323 * 300.00168 * 9 7 2 11 11 N 1.46501 * 109.47245 * 179.97438 * 9 7 2 12 12 C 1.34781 * 119.99906 * 155.00022 * 11 9 7 13 13 O 1.21585 * 120.00071 * 359.97438 * 12 11 9 14 14 N 1.34769 * 119.99518 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99686 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47068 * 324.99893 * 15 14 12 17 17 C 1.50699 * 109.47262 * 84.99746 * 15 14 12 18 18 N 1.34774 * 119.99942 * 180.02562 * 17 15 14 19 19 O 1.21285 * 120.00039 * 0.02562 * 17 15 14 20 20 C 1.50703 * 109.47064 * 204.99925 * 15 14 12 21 21 C 1.38237 * 119.99761 * 319.72219 * 20 15 14 22 22 C 1.38235 * 119.99594 * 179.78734 * 21 20 15 23 23 C 1.38241 * 120.00114 * 0.44582 * 22 21 20 24 24 C 1.38235 * 119.99880 * 359.81160 * 23 22 21 25 25 C 1.38232 * 120.00102 * 359.97426 * 24 23 22 26 26 C 1.53002 * 109.47323 * 59.99867 * 9 7 2 27 27 F 1.39896 * 109.47278 * 179.97438 * 26 9 7 28 28 F 1.39898 * 109.47241 * 300.00215 * 26 9 7 29 29 F 1.39907 * 109.46845 * 59.99857 * 26 9 7 30 30 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99721 * 334.99712 * 11 9 7 32 32 H 0.97000 * 120.00680 * 359.97438 * 14 12 11 33 33 H 0.96998 * 120.00125 * 359.97438 * 18 17 15 34 34 H 0.97001 * 119.99682 * 180.02562 * 18 17 15 35 35 H 1.07999 * 120.00184 * 0.02562 * 21 20 15 36 36 H 1.08006 * 119.99701 * 180.27695 * 22 21 20 37 37 H 1.08004 * 119.99768 * 179.83333 * 23 22 21 38 38 H 1.07996 * 120.00048 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.00285 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 2.2030 -3.6127 -0.0018 12 6 1.8372 -4.8126 0.4913 13 8 0.7173 -4.9707 0.9375 14 7 2.7132 -5.8368 0.4906 15 6 2.3154 -7.1412 1.0260 16 1 1.6424 -6.9971 1.8712 17 6 1.6120 -7.9314 -0.0472 18 7 1.1535 -9.1704 0.2194 19 8 1.4585 -7.4524 -1.1508 20 6 3.5402 -7.8919 1.4814 21 6 4.6988 -7.8457 0.7288 22 6 5.8236 -8.5308 1.1488 23 6 5.7870 -9.2696 2.3167 24 6 4.6267 -9.3200 3.0665 25 6 3.5033 -8.6314 2.6488 26 6 0.3709 -2.5800 -1.2494 27 9 -0.3281 -3.7918 -1.2497 28 9 -0.5382 -1.5167 -1.2489 29 9 1.1748 -2.5056 -2.3921 30 1 -0.4850 0.8401 0.0004 31 1 3.0966 -3.4865 -0.3575 32 1 3.6068 -5.7106 0.1349 33 1 1.2766 -9.5537 1.1019 34 1 0.7010 -9.6792 -0.4715 35 1 4.7264 -7.2713 -0.1854 36 1 6.7301 -8.4911 0.5631 37 1 6.6650 -9.8070 2.6434 38 1 4.5983 -9.8968 3.9791 39 1 2.5970 -8.6705 3.2348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364167386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:04 Heat of formation + Delta-G solvation = -198.949976 kcal Electronic energy + Delta-G solvation = -31141.181754 eV Core-core repulsion = 26247.496405 eV Total energy + Delta-G solvation = -4893.685349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.40298 -48.03963 -47.71955 -41.76630 -40.30282 -39.63180 -36.68594 -35.83264 -34.80912 -34.43546 -32.32866 -31.78568 -30.13090 -27.79411 -26.55994 -23.94698 -23.43650 -23.14506 -22.01483 -21.24414 -20.15624 -19.02313 -18.83391 -18.70299 -18.57959 -18.26633 -17.77495 -17.28389 -16.90807 -16.52932 -16.31844 -15.89657 -15.64624 -15.38610 -15.26998 -15.06166 -14.93402 -14.57812 -14.51949 -14.44365 -14.28468 -14.23421 -14.02458 -13.87602 -13.66556 -13.37037 -13.04009 -12.74583 -12.65083 -12.20429 -12.13189 -11.92054 -11.58495 -11.54779 -11.37743 -10.71464 -10.68548 -10.40046 -9.92479 -9.83379 -9.68396 -8.19846 -6.51098 0.28806 0.48844 1.45626 1.49181 1.50730 1.57977 1.62656 2.09255 2.38067 2.49664 2.64388 2.90139 2.95739 3.29538 3.45148 3.79326 3.86318 3.89404 4.00116 4.12960 4.18792 4.27027 4.33672 4.61527 4.69074 4.86604 4.98314 5.13439 5.24538 5.42083 5.49824 5.54315 5.58342 5.63035 5.65727 5.85039 6.00828 6.07335 6.37014 6.53923 7.07453 7.19302 7.28157 7.57925 8.73223 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.003290 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.672555 B = 8508.320471 C = 9515.302928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.987 3.013 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.272 3.728 10 H 0.050 0.950 11 N -0.718 5.718 12 C 0.704 3.296 13 O -0.623 6.623 14 N -0.712 5.712 15 C 0.192 3.808 16 H 0.119 0.881 17 C 0.504 3.496 18 N -0.829 5.829 19 O -0.579 6.579 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.106 4.106 26 C 0.410 3.590 27 F -0.221 7.221 28 F -0.150 7.150 29 F -0.206 7.206 30 H 0.269 0.731 31 H 0.409 0.591 32 H 0.410 0.590 33 H 0.417 0.583 34 H 0.408 0.592 35 H 0.116 0.884 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 -19.830 6.830 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.810 3.190 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.164 3.836 10 H 0.067 0.933 11 N -0.372 5.372 12 C 0.404 3.596 13 O -0.503 6.503 14 N -0.369 5.369 15 C 0.082 3.918 16 H 0.137 0.863 17 C 0.287 3.713 18 N -0.394 5.394 19 O -0.458 6.458 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.124 4.124 26 C 0.353 3.647 27 F -0.203 7.203 28 F -0.131 7.131 29 F -0.188 7.188 30 H 0.079 0.921 31 H 0.245 0.755 32 H 0.247 0.753 33 H 0.248 0.752 34 H 0.240 0.760 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.572 -19.383 6.587 23.516 hybrid contribution 0.127 0.676 -0.929 1.156 sum 11.699 -18.707 5.658 22.778 Atomic orbital electron populations 1.70545 1.07559 1.28180 1.44612 1.26032 0.95917 1.03741 0.93414 0.85115 0.78622 0.76919 0.78378 1.20115 1.20670 1.17867 1.21221 0.94574 0.88134 1.55818 0.88866 1.19220 0.88326 0.86490 0.89516 0.93250 1.44944 1.17472 1.09124 1.65612 1.16117 0.84106 0.80928 0.78447 1.90863 1.21331 1.83681 1.54470 1.44580 1.16158 1.08427 1.67722 1.19486 0.95937 0.81553 0.94817 0.86301 1.21329 0.78200 0.82750 0.89044 1.43530 1.60849 1.16157 1.18822 1.90769 1.58613 1.70423 1.25967 1.19417 0.93053 1.00342 0.97639 1.21085 0.93300 0.99964 0.99591 1.21392 0.98154 0.96796 0.97441 1.21614 0.99157 0.98035 0.94327 1.21488 0.92236 0.98870 1.00581 1.21259 1.00539 0.96238 0.94404 1.23466 0.80967 0.72298 0.87942 1.93076 1.81646 1.48526 1.97014 1.93369 1.68998 1.54432 1.96324 1.92976 1.74235 1.96152 1.55387 0.92142 0.75495 0.75276 0.75199 0.75992 0.86564 0.84111 0.83405 0.82894 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.73 9.50 21.45 0.20 -49.52 16 2 C 0.01 0.75 5.20 84.66 0.44 1.19 16 3 Si 0.99 41.23 29.54 68.60 2.03 43.26 16 4 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.56 -29.19 8.46 25.60 0.22 -28.97 16 8 H 0.09 4.44 7.74 -2.91 -0.02 4.42 16 9 C 0.27 14.44 2.21 44.25 0.10 14.54 16 10 H 0.05 2.98 7.58 -2.39 -0.02 2.96 16 11 N -0.72 -31.58 4.99 -461.41 -2.30 -33.89 16 12 C 0.70 30.50 7.93 179.06 1.42 31.92 16 13 O -0.62 -32.04 14.58 -3.99 -0.06 -32.10 16 14 N -0.71 -22.91 4.56 -465.03 -2.12 -25.04 16 15 C 0.19 5.12 2.58 43.50 0.11 5.23 16 16 H 0.12 3.26 7.44 -2.39 -0.02 3.24 16 17 C 0.50 14.98 7.44 87.66 0.65 15.63 16 18 N -0.83 -15.45 8.77 -173.53 -1.52 -16.97 16 19 O -0.58 -23.82 17.16 -3.05 -0.05 -23.88 16 20 C -0.10 -1.93 4.74 -19.86 -0.09 -2.03 16 21 C -0.12 -2.16 9.05 22.27 0.20 -1.96 16 22 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 23 C -0.11 -1.18 10.05 22.27 0.22 -0.96 16 24 C -0.11 -1.14 10.05 22.27 0.22 -0.92 16 25 C -0.11 -1.39 9.51 22.27 0.21 -1.18 16 26 C 0.41 22.91 2.81 71.98 0.20 23.11 16 27 F -0.22 -12.72 15.67 44.97 0.70 -12.01 16 28 F -0.15 -8.91 12.91 44.97 0.58 -8.33 16 29 F -0.21 -10.99 16.94 44.97 0.76 -10.22 16 30 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.41 15.22 8.55 -92.71 -0.79 14.43 16 32 H 0.41 10.88 6.90 -92.71 -0.64 10.24 16 33 H 0.42 4.66 8.56 -92.71 -0.79 3.87 16 34 H 0.41 6.80 8.93 -92.71 -0.83 5.98 16 35 H 0.12 2.18 6.93 -2.91 -0.02 2.16 16 36 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 38 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.15 1.32 8.04 -2.91 -0.02 1.30 16 Total: -1.00 -80.74 349.16 0.48 -80.27 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -1.88 Total: 34.20 kcal Atomic # 6 Polarization: 50.10 SS G_CDS: 4.13 Total: 54.23 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.74 Total: -125.41 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.11 Total: -55.98 kcal Atomic # 9 Polarization: -32.61 SS G_CDS: 2.05 Total: -30.56 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -80.74 0.48 -80.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.683 kcal (2) G-P(sol) polarization free energy of solvation -80.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds