Wall clock time and date at job start Wed Apr 1 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.08993 * 109.47301 * 305.53448 * 3 2 1 5 5 C 1.50704 * 109.47042 * 185.53731 * 3 2 1 6 6 H 1.08007 * 119.99811 * 244.98237 * 5 3 2 7 7 C 1.37876 * 120.00291 * 64.97875 * 5 3 2 8 8 N 1.31508 * 120.00258 * 195.69536 * 7 5 3 9 9 Si 1.86800 * 119.99733 * 15.69323 * 7 5 3 10 10 H 1.48499 * 109.46797 * 89.67397 * 9 7 5 11 11 H 1.48500 * 109.47222 * 209.67019 * 9 7 5 12 12 H 1.48501 * 109.47465 * 329.67777 * 9 7 5 13 13 N 1.46498 * 109.46896 * 65.53823 * 3 2 1 14 14 S 1.65599 * 119.99915 * 216.08124 * 13 3 2 15 15 O 1.42096 * 104.27868 * 180.13104 * 14 13 3 16 16 O 1.42104 * 104.27699 * 307.98530 * 14 13 3 17 17 C 1.81403 * 104.45067 * 64.05435 * 14 13 3 18 18 C 1.52996 * 109.47167 * 185.18736 * 17 14 13 19 19 H 1.09001 * 109.87222 * 59.29914 * 18 17 14 20 20 C 1.54098 * 109.87822 * 180.30859 * 18 17 14 21 21 C 1.54814 * 104.19046 * 121.45181 * 20 18 17 22 22 C 1.54994 * 102.09003 * 20.88318 * 21 20 18 23 23 H 1.08999 * 110.62394 * 81.47369 * 22 21 20 24 24 C 1.53001 * 110.61803 * 204.31831 * 22 21 20 25 25 F 1.39895 * 109.46947 * 59.99965 * 24 22 21 26 26 F 1.39905 * 109.47136 * 179.97438 * 24 22 21 27 27 F 1.39895 * 109.46986 * 299.99741 * 24 22 21 28 28 O 1.43747 * 109.87790 * 298.29285 * 18 17 14 29 29 H 1.08996 * 109.46836 * 294.94221 * 1 2 3 30 30 H 1.09004 * 109.47261 * 174.94708 * 1 2 3 31 31 H 1.08999 * 109.47258 * 54.94887 * 1 2 3 32 32 H 1.08999 * 109.47099 * 120.00594 * 2 1 3 33 33 H 1.09007 * 109.46798 * 240.00329 * 2 1 3 34 34 H 0.96998 * 120.00491 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00253 * 36.08107 * 13 3 2 36 36 H 1.09000 * 109.47047 * 305.18885 * 17 14 13 37 37 H 1.08997 * 109.46759 * 65.18930 * 17 14 13 38 38 H 1.09000 * 110.48612 * 240.13221 * 20 18 17 39 39 H 1.09007 * 110.48995 * 2.77537 * 20 18 17 40 40 H 1.09004 * 110.90546 * 139.07667 * 21 20 18 41 41 H 1.08990 * 110.90976 * 262.68359 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 3.5408 1.4447 -0.1371 6 1 4.1562 1.8136 0.6702 7 6 4.1282 0.9757 -1.2930 8 7 5.4109 0.6860 -1.3080 9 14 3.1019 0.7519 -2.8377 10 1 3.1159 2.0092 -3.6277 11 1 3.6696 -0.3515 -3.6535 12 1 1.7046 0.4201 -2.4600 13 7 1.6635 2.0935 1.2572 14 16 1.2410 3.6946 1.2664 15 8 0.9488 3.9722 2.6290 16 8 2.3151 4.3443 0.6005 17 6 -0.2686 3.7702 0.2634 18 6 -0.6915 5.2300 0.0874 19 1 0.1057 5.7903 -0.4011 20 6 -1.9781 5.3046 -0.7573 21 6 -2.9933 6.0284 0.1605 22 6 -2.0626 6.7529 1.1661 23 1 -1.6842 7.6814 0.7386 24 6 -2.7978 7.0268 2.4796 25 9 -3.2161 5.8156 3.0411 26 9 -1.9370 7.6797 3.3685 27 9 -3.9122 7.8349 2.2305 28 8 -0.9836 5.8121 1.3688 29 1 -0.3633 0.4334 0.9318 30 1 -0.3634 -1.0237 -0.0905 31 1 -0.3634 0.5902 -0.8413 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 5.8242 0.3564 -2.1212 35 1 1.6617 1.5867 2.0843 36 1 -0.0781 3.3267 -0.7139 37 1 -1.0650 3.2190 0.7635 38 1 -1.8053 5.8823 -1.6654 39 1 -2.3321 4.3032 -1.0027 40 1 -3.5873 6.7456 -0.4060 41 1 -3.6353 5.3113 0.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365699079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:06 Heat of formation + Delta-G solvation = -270.073422 kcal Electronic energy + Delta-G solvation = -30142.034497 eV Core-core repulsion = 25348.416203 eV Total energy + Delta-G solvation = -4793.618293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.34347 -47.89883 -47.77985 -40.13085 -36.60795 -36.17292 -35.28739 -33.02646 -32.66264 -32.21479 -31.05045 -28.46106 -27.21691 -24.66323 -22.81580 -22.37668 -21.76051 -20.54004 -19.04442 -18.78245 -18.56723 -18.13743 -17.33295 -17.12463 -16.56650 -16.33612 -15.83528 -15.38524 -14.78039 -14.66969 -14.60115 -14.43197 -14.27729 -14.16065 -14.01972 -13.94987 -13.93802 -13.51069 -13.00444 -12.85673 -12.77227 -12.37721 -12.29824 -12.27357 -12.04189 -11.68966 -11.59088 -11.46044 -11.35003 -11.32176 -10.96657 -10.92201 -10.70911 -10.40979 -10.27594 -10.13883 -9.89296 -9.46280 -8.62544 -8.26841 -6.15358 -4.10167 0.76293 2.16030 2.93515 3.18488 3.24037 3.30070 3.37404 3.39620 3.61281 3.95979 4.12865 4.17881 4.23254 4.32692 4.40087 4.56746 4.62311 4.65339 4.87825 5.07248 5.13119 5.22250 5.35810 5.39135 5.43301 5.66479 5.71372 5.74413 5.88298 6.07834 6.10338 6.38726 6.42728 6.61028 6.96077 7.17307 7.55370 7.82753 8.45774 8.99270 9.47158 10.98216 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.003328 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.581848 B = 8411.505766 C = 8646.859586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.256 3.744 4 H 0.028 0.972 5 C -0.527 4.527 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.851 3.149 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.252 1.252 13 N -1.098 6.098 14 S 2.612 3.388 15 O -0.962 6.962 16 O -0.937 6.937 17 C -0.649 4.649 18 C 0.087 3.913 19 H 0.100 0.900 20 C -0.139 4.139 21 C -0.149 4.149 22 C 0.029 3.971 23 H 0.121 0.879 24 C 0.464 3.536 25 F -0.172 7.172 26 F -0.173 7.173 27 F -0.177 7.177 28 O -0.348 6.348 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.265 0.735 35 H 0.409 0.591 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 9.344 0.453 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.045 0.955 5 C -0.566 4.566 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.522 5.522 9 Si 0.677 3.323 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.176 1.176 13 N -0.858 5.858 14 S 2.701 3.299 15 O -0.952 6.952 16 O -0.927 6.927 17 C -0.775 4.775 18 C 0.028 3.972 19 H 0.117 0.883 20 C -0.178 4.178 21 C -0.187 4.187 22 C -0.030 4.030 23 H 0.138 0.862 24 C 0.409 3.591 25 F -0.153 7.153 26 F -0.154 7.154 27 F -0.159 7.159 28 O -0.267 6.267 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.848 10.017 0.817 22.247 hybrid contribution -1.070 -0.702 -1.005 1.627 sum -20.918 9.315 -0.188 22.899 Atomic orbital electron populations 1.21915 0.98168 1.00552 1.00733 1.22240 0.93034 0.99319 1.02575 1.18806 0.96382 0.89615 0.80192 0.95487 1.21281 0.89162 1.42539 1.03615 0.89921 1.24877 0.94804 0.94316 0.98481 1.69953 1.11342 1.42850 1.28034 0.87401 0.81949 0.78398 0.84506 1.20144 1.21001 1.17645 1.55399 1.83018 1.30475 1.16891 1.04925 0.76056 0.74040 0.74906 1.93563 1.86080 1.83777 1.31761 1.93649 1.47788 1.74159 1.77059 1.30988 1.25619 1.01978 1.18870 1.22512 0.99185 0.91429 0.84040 0.88272 1.22980 0.93040 1.03125 0.98647 1.23222 0.98121 1.00469 0.96899 1.24347 0.89617 0.97552 0.91476 0.86168 1.20109 0.77663 0.74587 0.86706 1.93216 1.90570 1.44685 1.86825 1.93240 1.69673 1.81498 1.70989 1.93195 1.54351 1.73991 1.94320 1.89122 1.51678 1.56353 1.29559 0.93169 0.93668 0.93673 0.91663 0.91343 0.92517 0.75700 0.83458 0.84295 0.89076 0.88730 0.88185 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.75 37.16 0.36 -1.91 16 2 C -0.13 -2.47 4.83 -26.73 -0.13 -2.60 16 3 C 0.26 5.41 1.61 -69.08 -0.11 5.30 16 4 H 0.03 0.55 5.66 -51.93 -0.29 0.26 16 5 C -0.53 -14.23 9.27 -34.44 -0.32 -14.55 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.08 2.17 5.32 -17.82 -0.09 2.08 16 8 N -0.88 -26.25 13.96 55.43 0.77 -25.47 16 9 Si 0.85 19.49 25.81 -169.99 -4.39 15.10 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.25 -5.08 5.52 56.52 0.31 -4.77 16 13 N -1.10 -20.52 4.90 -5.88 -0.03 -20.55 16 14 S 2.61 47.66 5.13 -107.50 -0.55 47.11 16 15 O -0.96 -19.48 17.75 -58.70 -1.04 -20.53 16 16 O -0.94 -21.04 17.84 -57.54 -1.03 -22.07 16 17 C -0.65 -8.24 5.48 37.16 0.20 -8.03 16 18 C 0.09 0.99 3.45 -26.16 -0.09 0.90 16 19 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 20 C -0.14 -1.04 6.64 -25.20 -0.17 -1.21 16 21 C -0.15 -1.04 6.34 -24.72 -0.16 -1.19 16 22 C 0.03 0.28 3.31 -25.68 -0.08 0.19 16 23 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 24 C 0.46 4.97 2.93 37.16 0.11 5.08 16 25 F -0.17 -2.10 16.58 2.25 0.04 -2.06 16 26 F -0.17 -2.17 17.32 2.25 0.04 -2.13 16 27 F -0.18 -1.64 17.08 2.25 0.04 -1.60 16 28 O -0.35 -4.62 10.19 -35.24 -0.36 -4.98 16 29 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.36 5.00 -51.92 -0.26 1.10 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.41 6.91 8.81 -34.47 -0.30 6.60 16 36 H 0.15 1.63 7.26 -51.92 -0.38 1.25 16 37 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.63 7.70 -51.92 -0.40 0.23 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -35.11 356.64 -7.08 -42.19 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.47 Total: 5.55 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.48 Total: -15.94 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.74 Total: -46.02 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.43 Total: -47.57 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.39 Total: 15.10 kcal Atomic # 16 Polarization: 47.66 SS G_CDS: -0.55 Total: 47.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.11 -7.08 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365699079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.887 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds