Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 H 1.08993 * 109.47301 * 305.53448 * 3 2 1 5 5 C 1.50704 * 109.47042 * 185.53731 * 3 2 1 6 6 H 1.08007 * 119.99811 * 244.98237 * 5 3 2 7 7 C 1.37876 * 120.00291 * 64.97875 * 5 3 2 8 8 N 1.31508 * 120.00258 * 195.69536 * 7 5 3 9 9 Si 1.86800 * 119.99733 * 15.69323 * 7 5 3 10 10 H 1.48499 * 109.46797 * 89.67397 * 9 7 5 11 11 H 1.48500 * 109.47222 * 209.67019 * 9 7 5 12 12 H 1.48501 * 109.47465 * 329.67777 * 9 7 5 13 13 N 1.46498 * 109.46896 * 65.53823 * 3 2 1 14 14 S 1.65599 * 119.99915 * 216.08124 * 13 3 2 15 15 O 1.42096 * 104.27868 * 180.13104 * 14 13 3 16 16 O 1.42104 * 104.27699 * 307.98530 * 14 13 3 17 17 C 1.81403 * 104.45067 * 64.05435 * 14 13 3 18 18 C 1.52996 * 109.47167 * 185.18736 * 17 14 13 19 19 H 1.09001 * 109.87222 * 59.29914 * 18 17 14 20 20 C 1.54098 * 109.87822 * 180.30859 * 18 17 14 21 21 C 1.54814 * 104.19046 * 121.45181 * 20 18 17 22 22 C 1.54994 * 102.09003 * 20.88318 * 21 20 18 23 23 H 1.08999 * 110.62394 * 81.47369 * 22 21 20 24 24 C 1.53001 * 110.61803 * 204.31831 * 22 21 20 25 25 F 1.39895 * 109.46947 * 59.99965 * 24 22 21 26 26 F 1.39905 * 109.47136 * 179.97438 * 24 22 21 27 27 F 1.39895 * 109.46986 * 299.99741 * 24 22 21 28 28 O 1.43747 * 109.87790 * 298.29285 * 18 17 14 29 29 H 1.08996 * 109.46836 * 294.94221 * 1 2 3 30 30 H 1.09004 * 109.47261 * 174.94708 * 1 2 3 31 31 H 1.08999 * 109.47258 * 54.94887 * 1 2 3 32 32 H 1.08999 * 109.47099 * 120.00594 * 2 1 3 33 33 H 1.09007 * 109.46798 * 240.00329 * 2 1 3 34 34 H 0.96998 * 120.00491 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00253 * 36.08107 * 13 3 2 36 36 H 1.09000 * 109.47047 * 305.18885 * 17 14 13 37 37 H 1.08997 * 109.46759 * 65.18930 * 17 14 13 38 38 H 1.09000 * 110.48612 * 240.13221 * 20 18 17 39 39 H 1.09007 * 110.48995 * 2.77537 * 20 18 17 40 40 H 1.09004 * 110.90546 * 139.07667 * 21 20 18 41 41 H 1.08990 * 110.90976 * 262.68359 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 3.5408 1.4447 -0.1371 6 1 4.1562 1.8136 0.6702 7 6 4.1282 0.9757 -1.2930 8 7 5.4109 0.6860 -1.3080 9 14 3.1019 0.7519 -2.8377 10 1 3.1159 2.0092 -3.6277 11 1 3.6696 -0.3515 -3.6535 12 1 1.7046 0.4201 -2.4600 13 7 1.6635 2.0935 1.2572 14 16 1.2410 3.6946 1.2664 15 8 0.9488 3.9722 2.6290 16 8 2.3151 4.3443 0.6005 17 6 -0.2686 3.7702 0.2634 18 6 -0.6915 5.2300 0.0874 19 1 0.1057 5.7903 -0.4011 20 6 -1.9781 5.3046 -0.7573 21 6 -2.9933 6.0284 0.1605 22 6 -2.0626 6.7529 1.1661 23 1 -1.6842 7.6814 0.7386 24 6 -2.7978 7.0268 2.4796 25 9 -3.2161 5.8156 3.0411 26 9 -1.9370 7.6797 3.3685 27 9 -3.9122 7.8349 2.2305 28 8 -0.9836 5.8121 1.3688 29 1 -0.3633 0.4334 0.9318 30 1 -0.3634 -1.0237 -0.0905 31 1 -0.3634 0.5902 -0.8413 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 5.8242 0.3564 -2.1212 35 1 1.6617 1.5867 2.0843 36 1 -0.0781 3.3267 -0.7139 37 1 -1.0650 3.2190 0.7635 38 1 -1.8053 5.8823 -1.6654 39 1 -2.3321 4.3032 -1.0027 40 1 -3.5873 6.7456 -0.4060 41 1 -3.6353 5.3113 0.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365699079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = -298.764298 kcal Electronic energy + Delta-G solvation = -30143.278626 eV Core-core repulsion = 25348.416203 eV Total energy + Delta-G solvation = -4794.862423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.17103 -48.70158 -48.66733 -40.87771 -38.17981 -37.74161 -36.84243 -34.25512 -33.84277 -33.35482 -32.41241 -29.30592 -28.98237 -25.43283 -24.47671 -23.09896 -22.47299 -22.07394 -20.34894 -19.70189 -19.39253 -19.11768 -18.88848 -18.45104 -17.82474 -17.37068 -17.19558 -16.64884 -16.30125 -15.61910 -15.57216 -15.44817 -15.30771 -15.10157 -14.94646 -14.86586 -14.80586 -14.71679 -14.53778 -14.02725 -13.87217 -13.60250 -13.48407 -13.18908 -13.08658 -13.02642 -12.92721 -12.88338 -12.59089 -12.55124 -12.37988 -12.18053 -11.86747 -11.75437 -11.62646 -11.37233 -11.18912 -11.15545 -10.60063 -9.97548 -8.25372 -6.26107 -0.61611 1.38524 1.41398 1.43755 1.51524 1.95562 2.17884 2.40088 2.65308 2.87402 2.92184 3.07630 3.23365 3.36009 3.41238 3.60829 3.67235 3.91273 3.93744 4.12683 4.27054 4.33894 4.40660 4.50081 4.54329 4.65504 4.71614 4.83442 4.93693 5.03661 5.07754 5.20818 5.31110 5.38461 5.50186 5.61599 5.71760 6.27783 6.46175 6.77583 7.35754 8.92994 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020559 B = 0.003328 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.581848 B = 8411.505766 C = 8646.859586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.258 3.742 4 H 0.050 0.950 5 C -0.540 4.540 6 H 0.021 0.979 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.919 3.081 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.197 1.197 13 N -1.102 6.102 14 S 2.597 3.403 15 O -0.994 6.994 16 O -0.997 6.997 17 C -0.614 4.614 18 C 0.070 3.930 19 H 0.099 0.901 20 C -0.130 4.130 21 C -0.143 4.143 22 C 0.021 3.979 23 H 0.144 0.856 24 C 0.459 3.541 25 F -0.183 7.183 26 F -0.190 7.190 27 F -0.168 7.168 28 O -0.385 6.385 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.413 0.587 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.505 9.201 -2.240 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.151 3.849 4 H 0.068 0.932 5 C -0.579 4.579 6 H 0.039 0.961 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.119 1.119 13 N -0.860 5.860 14 S 2.694 3.306 15 O -0.985 6.985 16 O -0.987 6.987 17 C -0.746 4.746 18 C 0.012 3.988 19 H 0.117 0.883 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.037 4.037 23 H 0.162 0.838 24 C 0.404 3.596 25 F -0.165 7.165 26 F -0.172 7.172 27 F -0.149 7.149 28 O -0.306 6.306 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.195 0.805 37 H 0.189 0.811 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.768 9.871 -1.801 26.723 hybrid contribution 0.491 -0.555 -0.022 0.741 sum -24.277 9.315 -1.823 26.067 Atomic orbital electron populations 1.21898 0.93993 1.02549 1.02610 1.22117 0.96698 0.96566 1.01777 1.18716 0.92429 0.91984 0.81747 0.93239 1.21653 0.92534 1.41624 1.02049 0.96110 1.25947 0.96172 0.93937 1.02670 1.70146 1.14175 1.45154 1.29125 0.86324 0.82803 0.78268 0.78611 1.19856 1.21239 1.11852 1.55242 1.83969 1.30278 1.16541 1.04965 0.77518 0.73195 0.74897 1.93517 1.86863 1.83863 1.34220 1.93579 1.52324 1.75167 1.77651 1.30692 1.20902 1.04496 1.18529 1.22833 1.01685 0.89945 0.84378 0.88328 1.23033 0.90322 1.04820 0.98618 1.23311 0.97689 1.00860 0.96159 1.24707 0.89529 0.98389 0.91090 0.83841 1.20450 0.77869 0.74156 0.87083 1.93186 1.90706 1.45420 1.87174 1.93204 1.70320 1.81827 1.71829 1.93208 1.53837 1.73669 1.94195 1.89097 1.53132 1.57443 1.30882 0.91616 0.91739 0.91534 0.92610 0.92353 0.92626 0.75265 0.80543 0.81123 0.86477 0.86920 0.85072 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.75 71.98 0.70 -2.93 16 2 C -0.13 -4.59 4.83 30.59 0.15 -4.44 16 3 C 0.26 10.63 1.61 44.25 0.07 10.70 16 4 H 0.05 1.83 5.66 -2.39 -0.01 1.82 16 5 C -0.54 -30.36 9.27 25.60 0.24 -30.12 16 6 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 7 C 0.01 0.59 5.32 84.66 0.45 1.04 16 8 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 9 Si 0.92 39.23 25.81 68.60 1.77 41.00 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.20 -6.64 5.52 99.48 0.55 -6.09 16 13 N -1.10 -41.10 4.90 -172.53 -0.85 -41.95 16 14 S 2.60 94.61 5.13 -56.49 -0.29 94.32 16 15 O -0.99 -41.27 17.75 -126.54 -2.25 -43.52 16 16 O -1.00 -46.58 17.84 -127.65 -2.28 -48.86 16 17 C -0.61 -13.09 5.48 71.98 0.39 -12.70 16 18 C 0.07 1.35 3.45 30.96 0.11 1.46 16 19 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 20 C -0.13 -1.18 6.64 31.58 0.21 -0.97 16 21 C -0.14 -1.28 6.34 31.90 0.20 -1.08 16 22 C 0.02 0.35 3.31 31.28 0.10 0.45 16 23 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 24 C 0.46 9.10 2.93 71.98 0.21 9.31 16 25 F -0.18 -4.24 16.58 44.97 0.75 -3.49 16 26 F -0.19 -4.74 17.32 44.97 0.78 -3.97 16 27 F -0.17 -2.73 17.08 44.97 0.77 -1.96 16 28 O -0.39 -9.47 10.19 -148.97 -1.52 -10.99 16 29 H 0.06 1.36 7.91 -2.39 -0.02 1.35 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.13 5.00 -2.38 -0.01 2.12 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.41 14.26 8.81 -96.75 -0.85 13.40 16 36 H 0.18 2.83 7.26 -2.39 -0.02 2.81 16 37 H 0.17 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 0.68 7.70 -2.38 -0.02 0.66 16 40 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.09 0.88 7.55 -2.39 -0.02 0.86 16 Total: -1.00 -85.59 356.64 0.09 -85.50 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.06 Total: 22.03 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 2.84 Total: -29.27 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -0.55 Total: -100.79 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -6.04 Total: -103.37 kcal Atomic # 9 Polarization: -11.72 SS G_CDS: 2.29 Total: -9.42 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.77 Total: 41.00 kcal Atomic # 16 Polarization: 94.61 SS G_CDS: -0.29 Total: 94.32 kcal Total: -85.59 0.09 -85.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365699079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.263 kcal (2) G-P(sol) polarization free energy of solvation -85.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -298.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds