Wall clock time and date at job start Wed Apr 1 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00090 * 2 1 4 4 O 1.20822 * 119.99674 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99973 * 180.27245 * 3 2 1 6 6 C 1.50705 * 109.47191 * 179.72869 * 5 3 2 7 7 O 1.33660 * 125.80155 * 269.69347 * 6 5 3 8 8 C 1.34216 * 110.90878 * 179.85025 * 7 6 5 9 9 C 1.34170 * 109.12499 * 0.41439 * 8 7 6 10 10 C 1.36425 * 125.80467 * 89.99794 * 6 5 3 11 11 C 1.47358 * 127.19375 * 0.02562 * 10 6 5 12 12 O 1.21613 * 120.00078 * 0.02562 * 11 10 6 13 13 N 1.34782 * 119.99816 * 179.97438 * 11 10 6 14 14 C 1.39860 * 119.99748 * 174.78547 * 13 11 10 15 15 C 1.38976 * 120.03379 * 146.03481 * 14 13 11 16 16 C 1.38162 * 120.06204 * 179.71992 * 15 14 13 17 17 C 1.38174 * 120.13868 * 0.55749 * 16 15 14 18 18 C 1.38912 * 120.07465 * 359.71776 * 17 16 15 19 19 O 1.35747 * 120.03530 * 179.97438 * 18 17 16 20 20 C 1.34835 * 116.99430 * 5.93366 * 19 18 17 21 21 H 1.07995 * 120.00152 * 5.39591 * 20 19 18 22 22 C 1.38659 * 119.99690 * 185.40155 * 20 19 18 23 23 N 1.31560 * 119.99562 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46704 * 59.99580 * 24 22 20 26 26 H 1.48493 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46862 * 299.99565 * 24 22 20 28 28 C 1.38727 * 120.03853 * 326.30913 * 14 13 11 29 29 H 1.08997 * 109.47444 * 299.99736 * 1 2 3 30 30 H 1.08996 * 109.47083 * 60.00094 * 1 2 3 31 31 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47487 * 299.72689 * 5 3 2 33 33 H 1.09003 * 109.47046 * 59.72935 * 5 3 2 34 34 H 1.07998 * 125.43493 * 180.13356 * 8 7 6 35 35 H 1.08008 * 127.01927 * 179.73207 * 9 8 7 36 36 H 0.96997 * 119.99670 * 354.78317 * 13 11 10 37 37 H 1.08003 * 119.97046 * 359.97438 * 15 14 13 38 38 H 1.07997 * 119.93150 * 180.25441 * 16 15 14 39 39 H 1.07995 * 119.96250 * 179.74170 * 17 16 15 40 40 H 0.97006 * 119.99307 * 180.02562 * 23 22 20 41 41 H 1.07996 * 120.06740 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0062 6 6 3.9936 2.7200 -0.0116 7 8 4.2165 3.4653 -1.0985 8 6 4.5808 4.7115 -0.7582 9 6 4.6140 4.8100 0.5795 10 6 4.2243 3.4882 1.0919 11 6 4.1082 3.0785 2.5026 12 8 3.7742 1.9426 2.7804 13 7 4.3731 3.9624 3.4850 14 6 4.1584 3.6083 4.8209 15 6 4.9960 4.1010 5.8144 16 6 4.7809 3.7562 7.1349 17 6 3.7401 2.9117 7.4707 18 6 2.9029 2.4113 6.4817 19 8 1.8809 1.5812 6.8124 20 6 1.6569 1.3798 8.1267 21 1 2.2199 1.9357 8.8619 22 6 0.7038 0.4589 8.5344 23 7 0.0178 -0.2179 7.6387 24 14 0.3940 0.1792 10.3551 25 1 -0.0442 1.4513 10.9837 26 1 -0.6657 -0.8471 10.5250 27 1 1.6451 -0.2883 11.0040 28 6 3.1126 2.7602 5.1551 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9596 0.7830 0.8835 33 1 3.9524 0.7784 -0.8965 34 1 4.8146 5.5066 -1.4506 35 1 4.8742 5.6821 1.1611 36 1 4.7128 4.8441 3.2655 37 1 5.8133 4.7574 5.5545 38 1 5.4306 4.1436 7.9057 39 1 3.5771 2.6407 8.5034 40 1 -0.6492 -0.8619 7.9239 41 1 2.4628 2.3728 4.3844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411271999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:38 Heat of formation + Delta-G solvation = -93.809385 kcal Electronic energy + Delta-G solvation = -29367.615147 eV Core-core repulsion = 24988.053025 eV Total energy + Delta-G solvation = -4379.562122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.86806 -40.39937 -39.98392 -38.52640 -36.62550 -36.45510 -34.17669 -33.28619 -32.49735 -32.21280 -29.56635 -28.83669 -28.31279 -26.90203 -25.30250 -23.97587 -22.23193 -21.84743 -21.44328 -20.61286 -19.74492 -18.26494 -18.03278 -17.87877 -17.11344 -16.80132 -16.57409 -16.08123 -15.76604 -15.59442 -15.06386 -14.88147 -14.75687 -14.20139 -14.03332 -13.89480 -13.58470 -13.50580 -13.47274 -13.13014 -12.92348 -12.72648 -12.48829 -12.09300 -11.98107 -11.72450 -11.51049 -11.18784 -10.95925 -10.82581 -10.77646 -10.63972 -10.46882 -10.02796 -9.92978 -9.71384 -9.24033 -8.92377 -8.78950 -7.66920 -7.16637 -6.39978 -3.99217 1.02229 1.77978 2.13891 2.17415 2.35580 2.38671 2.82453 3.15503 3.16696 3.19785 3.27165 3.43564 4.00364 4.10520 4.53089 4.57009 4.64226 4.69483 4.85653 5.09126 5.15253 5.16924 5.19572 5.22465 5.32690 5.51644 5.54487 5.63777 5.67429 5.84405 5.99809 6.12286 6.23664 6.31113 6.38766 6.66339 6.75025 6.90744 7.04868 7.09542 7.35637 7.48916 7.64635 7.69734 7.80128 8.04499 8.33327 9.04729 9.76224 10.77836 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.003196 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.477702 B = 8757.907999 C =11036.702949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.472 3.528 4 O -0.499 6.499 5 C -0.042 4.042 6 C 0.081 3.919 7 O -0.169 6.169 8 C -0.026 4.026 9 C -0.190 4.190 10 C -0.214 4.214 11 C 0.583 3.417 12 O -0.512 6.512 13 N -0.659 5.659 14 C 0.178 3.822 15 C -0.235 4.235 16 C -0.058 4.058 17 C -0.244 4.244 18 C 0.168 3.832 19 O -0.173 6.173 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.186 4.186 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.211 0.789 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.145 7.355 -16.866 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.315 3.685 4 O -0.386 6.386 5 C -0.079 4.079 6 C 0.028 3.972 7 O -0.065 6.065 8 C -0.092 4.092 9 C -0.209 4.209 10 C -0.218 4.218 11 C 0.371 3.629 12 O -0.388 6.388 13 N -0.304 5.304 14 C 0.085 3.915 15 C -0.256 4.256 16 C -0.077 4.077 17 C -0.264 4.264 18 C 0.113 3.887 19 O -0.076 6.076 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.207 4.207 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.174 0.826 33 H 0.145 0.855 34 H 0.227 0.773 35 H 0.178 0.822 36 H 0.241 0.759 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.253 6.419 -17.147 20.083 hybrid contribution -0.061 0.708 0.995 1.223 sum 8.192 7.127 -16.153 19.463 Atomic orbital electron populations 1.23324 0.75580 1.03992 1.02787 1.86453 1.23961 1.32575 1.84020 1.23064 0.91091 0.81827 0.72556 1.90706 1.66941 1.36285 1.44698 1.19886 0.89791 0.89155 1.09079 1.21590 0.99228 0.92821 0.83537 1.83731 1.66808 1.21512 1.34421 1.23869 1.03923 0.84958 0.96451 1.22861 1.06177 0.97278 0.94569 1.21118 1.12167 0.95010 0.93541 1.17245 0.77143 0.84855 0.83613 1.90845 1.45718 1.18861 1.83400 1.43115 1.65531 1.17109 1.04597 1.17134 0.94460 0.98155 0.81737 1.20259 1.02481 1.10088 0.92755 1.20504 0.96299 0.96035 0.94853 1.21182 0.99622 1.05349 1.00231 1.19105 0.87585 0.89703 0.92283 1.84009 1.41553 1.54661 1.27406 1.21292 1.22169 1.23693 0.79685 0.89075 1.25300 0.95736 0.95256 1.00228 1.70051 1.22195 1.23531 1.33720 0.85782 0.78518 0.78542 0.80578 1.19516 1.20309 1.19491 1.20014 1.00573 1.05319 0.94836 0.91273 0.92025 0.87784 0.82598 0.85547 0.77258 0.82229 0.75891 0.87344 0.86995 0.85424 0.91999 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.35 -4.85 10.56 -39.25 -0.41 -5.26 16 3 C 0.47 6.96 7.95 36.00 0.29 7.25 16 4 O -0.50 -8.82 15.78 -18.75 -0.30 -9.11 16 5 C -0.04 -0.50 5.82 -29.03 -0.17 -0.67 16 6 C 0.08 1.04 5.87 -34.96 -0.21 0.84 16 7 O -0.17 -1.87 10.52 7.63 0.08 -1.79 16 8 C -0.03 -0.22 12.03 29.30 0.35 0.13 16 9 C -0.19 -1.85 10.60 -37.46 -0.40 -2.24 16 10 C -0.21 -2.92 6.31 -103.28 -0.65 -3.57 16 11 C 0.58 9.85 7.55 -12.55 -0.09 9.76 16 12 O -0.51 -10.48 12.55 5.27 0.07 -10.42 16 13 N -0.66 -10.29 5.33 -10.87 -0.06 -10.35 16 14 C 0.18 3.44 6.27 -83.74 -0.52 2.91 16 15 C -0.23 -4.09 9.96 -39.34 -0.39 -4.48 16 16 C -0.06 -1.07 10.03 -39.63 -0.40 -1.47 16 17 C -0.24 -5.44 9.13 -39.36 -0.36 -5.80 16 18 C 0.17 4.30 6.64 -39.14 -0.26 4.04 16 19 O -0.17 -5.18 9.76 0.04 0.00 -5.18 16 20 C -0.39 -11.24 9.44 30.89 0.29 -10.95 16 21 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 24 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 C -0.19 -4.40 8.59 -39.20 -0.34 -4.73 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 1.96 6.48 -51.93 -0.34 1.63 16 33 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.16 1.07 7.75 -52.48 -0.41 0.66 16 36 H 0.41 4.65 8.01 -40.82 -0.33 4.32 16 37 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 3.26 6.44 -52.49 -0.34 2.92 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -37.72 366.01 -5.34 -43.05 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.08 Total: 9.32 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.89 Total: -6.50 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.70 Total: -35.45 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.56 Total: -31.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.72 -5.34 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411271999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.756 kcal (2) G-P(sol) polarization free energy of solvation -37.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds