Wall clock time and date at job start Wed Apr 1 2020 04:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00090 * 2 1 4 4 O 1.20822 * 119.99674 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99973 * 180.27245 * 3 2 1 6 6 C 1.50705 * 109.47191 * 179.72869 * 5 3 2 7 7 O 1.33660 * 125.80155 * 269.69347 * 6 5 3 8 8 C 1.34216 * 110.90878 * 179.85025 * 7 6 5 9 9 C 1.34170 * 109.12499 * 0.41439 * 8 7 6 10 10 C 1.36425 * 125.80467 * 89.99794 * 6 5 3 11 11 C 1.47358 * 127.19375 * 0.02562 * 10 6 5 12 12 O 1.21613 * 120.00078 * 0.02562 * 11 10 6 13 13 N 1.34782 * 119.99816 * 179.97438 * 11 10 6 14 14 C 1.39860 * 119.99748 * 174.78547 * 13 11 10 15 15 C 1.38976 * 120.03379 * 146.03481 * 14 13 11 16 16 C 1.38162 * 120.06204 * 179.71992 * 15 14 13 17 17 C 1.38174 * 120.13868 * 0.55749 * 16 15 14 18 18 C 1.38912 * 120.07465 * 359.71776 * 17 16 15 19 19 O 1.35747 * 120.03530 * 179.97438 * 18 17 16 20 20 C 1.34835 * 116.99430 * 5.93366 * 19 18 17 21 21 H 1.07995 * 120.00152 * 5.39591 * 20 19 18 22 22 C 1.38659 * 119.99690 * 185.40155 * 20 19 18 23 23 N 1.31560 * 119.99562 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00034 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46704 * 59.99580 * 24 22 20 26 26 H 1.48493 * 109.47207 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46862 * 299.99565 * 24 22 20 28 28 C 1.38727 * 120.03853 * 326.30913 * 14 13 11 29 29 H 1.08997 * 109.47444 * 299.99736 * 1 2 3 30 30 H 1.08996 * 109.47083 * 60.00094 * 1 2 3 31 31 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47487 * 299.72689 * 5 3 2 33 33 H 1.09003 * 109.47046 * 59.72935 * 5 3 2 34 34 H 1.07998 * 125.43493 * 180.13356 * 8 7 6 35 35 H 1.08008 * 127.01927 * 179.73207 * 9 8 7 36 36 H 0.96997 * 119.99670 * 354.78317 * 13 11 10 37 37 H 1.08003 * 119.97046 * 359.97438 * 15 14 13 38 38 H 1.07997 * 119.93150 * 180.25441 * 16 15 14 39 39 H 1.07995 * 119.96250 * 179.74170 * 17 16 15 40 40 H 0.97006 * 119.99307 * 180.02562 * 23 22 20 41 41 H 1.07996 * 120.06740 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0062 6 6 3.9936 2.7200 -0.0116 7 8 4.2165 3.4653 -1.0985 8 6 4.5808 4.7115 -0.7582 9 6 4.6140 4.8100 0.5795 10 6 4.2243 3.4882 1.0919 11 6 4.1082 3.0785 2.5026 12 8 3.7742 1.9426 2.7804 13 7 4.3731 3.9624 3.4850 14 6 4.1584 3.6083 4.8209 15 6 4.9960 4.1010 5.8144 16 6 4.7809 3.7562 7.1349 17 6 3.7401 2.9117 7.4707 18 6 2.9029 2.4113 6.4817 19 8 1.8809 1.5812 6.8124 20 6 1.6569 1.3798 8.1267 21 1 2.2199 1.9357 8.8619 22 6 0.7038 0.4589 8.5344 23 7 0.0178 -0.2179 7.6387 24 14 0.3940 0.1792 10.3551 25 1 -0.0442 1.4513 10.9837 26 1 -0.6657 -0.8471 10.5250 27 1 1.6451 -0.2883 11.0040 28 6 3.1126 2.7602 5.1551 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.9596 0.7830 0.8835 33 1 3.9524 0.7784 -0.8965 34 1 4.8146 5.5066 -1.4506 35 1 4.8742 5.6821 1.1611 36 1 4.7128 4.8441 3.2655 37 1 5.8133 4.7574 5.5545 38 1 5.4306 4.1436 7.9057 39 1 3.5771 2.6407 8.5034 40 1 -0.6492 -0.8619 7.9239 41 1 2.4628 2.3728 4.3844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411271999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:37 Heat of formation + Delta-G solvation = -120.959570 kcal Electronic energy + Delta-G solvation = -29368.792467 eV Core-core repulsion = 24988.053025 eV Total energy + Delta-G solvation = -4380.739442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.72696 -41.55730 -41.47105 -40.27186 -38.24222 -37.73180 -35.67308 -34.31565 -34.23225 -33.39863 -31.23903 -30.23485 -29.50780 -27.89941 -27.33750 -25.25904 -23.60270 -23.10287 -22.78877 -21.88598 -20.92477 -19.91751 -19.30799 -18.99225 -18.83344 -17.88873 -17.69903 -17.19530 -17.11176 -16.79030 -16.76895 -16.35905 -16.06794 -15.76168 -15.57849 -15.48234 -14.98920 -14.69711 -14.56979 -14.40288 -14.22876 -13.96070 -13.81196 -13.59225 -13.23358 -13.09119 -12.95522 -12.86318 -12.64432 -12.39168 -12.16459 -11.94211 -11.84872 -11.52595 -11.36781 -10.96903 -10.91524 -10.75799 -9.76845 -9.36177 -8.89209 -8.46952 -6.16945 -0.06917 0.49693 0.68791 0.98350 1.10838 1.34110 1.44428 1.46858 1.51858 1.81971 2.01318 2.19074 2.23319 2.82395 3.16248 3.28658 3.38523 3.64809 3.67835 3.79141 4.03340 4.11418 4.18326 4.21404 4.27083 4.35484 4.39932 4.51008 4.59072 4.62240 4.69957 4.71903 4.83931 5.02294 5.10045 5.21074 5.31062 5.38439 5.41574 5.61309 5.72085 5.90382 6.01713 6.16887 6.39062 6.49709 6.96262 7.05338 7.78609 8.76703 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.003196 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.477702 B = 8757.907999 C =11036.702949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.537 6.537 5 C -0.041 4.041 6 C 0.070 3.930 7 O -0.171 6.171 8 C -0.010 4.010 9 C -0.195 4.195 10 C -0.240 4.240 11 C 0.577 3.423 12 O -0.559 6.559 13 N -0.645 5.645 14 C 0.185 3.815 15 C -0.202 4.202 16 C -0.046 4.046 17 C -0.253 4.253 18 C 0.128 3.872 19 O -0.236 6.236 20 C -0.416 4.416 21 H 0.107 0.893 22 C -0.027 4.027 23 N -0.924 5.924 24 Si 1.024 2.976 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.254 1.254 28 C -0.214 4.214 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.261 0.739 35 H 0.193 0.807 36 H 0.430 0.570 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.272 0.728 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.523 10.430 -17.157 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.426 6.426 5 C -0.078 4.078 6 C 0.016 3.984 7 O -0.066 6.066 8 C -0.075 4.075 9 C -0.214 4.214 10 C -0.245 4.245 11 C 0.368 3.632 12 O -0.438 6.438 13 N -0.291 5.291 14 C 0.091 3.909 15 C -0.223 4.223 16 C -0.064 4.064 17 C -0.273 4.273 18 C 0.077 3.923 19 O -0.142 6.142 20 C -0.491 4.491 21 H 0.124 0.876 22 C -0.224 4.224 23 N -0.562 5.562 24 Si 0.842 3.158 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.235 4.235 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.276 0.724 35 H 0.210 0.790 36 H 0.270 0.730 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.701 9.567 -17.481 23.109 hybrid contribution -0.892 -0.029 0.830 1.219 sum 10.809 9.538 -16.651 22.024 Atomic orbital electron populations 1.23556 0.74594 1.05927 1.02250 1.86457 1.25107 1.32292 1.83625 1.23711 0.92289 0.81477 0.71315 1.90669 1.67974 1.37344 1.46652 1.19964 0.87650 0.89751 1.10428 1.21676 0.99425 0.93251 0.84038 1.83759 1.66585 1.22583 1.33664 1.24898 1.01161 0.84438 0.97047 1.23227 1.06426 0.96389 0.95352 1.21084 1.14158 0.97616 0.91617 1.17836 0.75913 0.84316 0.85176 1.90836 1.47587 1.21077 1.84333 1.42999 1.65086 1.18106 1.02957 1.17292 0.93020 0.96509 0.84065 1.20899 1.01816 1.08032 0.91510 1.21064 0.94874 0.93795 0.96702 1.21344 1.00415 1.06193 0.99316 1.19628 0.88298 0.90436 0.93909 1.83971 1.44485 1.57545 1.28217 1.21879 1.22908 1.24385 0.79965 0.87583 1.26728 0.95026 0.94521 1.06084 1.70229 1.23921 1.25335 1.36707 0.84586 0.78924 0.78993 0.73275 1.17886 1.19760 1.17822 1.20003 1.02378 1.07627 0.93524 0.93775 0.90589 0.84681 0.83865 0.81314 0.72368 0.79021 0.73048 0.81670 0.81946 0.85695 0.91885 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -10.41 10.56 -51.38 -0.54 -10.95 16 3 C 0.47 14.57 7.95 71.23 0.57 15.13 16 4 O -0.54 -20.04 15.78 21.98 0.35 -19.69 16 5 C -0.04 -1.01 5.82 29.10 0.17 -0.84 16 6 C 0.07 1.75 5.87 25.26 0.15 1.90 16 7 O -0.17 -3.39 10.52 4.39 0.05 -3.34 16 8 C -0.01 -0.13 12.03 66.89 0.80 0.67 16 9 C -0.20 -3.15 10.60 23.65 0.25 -2.90 16 10 C -0.24 -6.37 6.31 -19.00 -0.12 -6.49 16 11 C 0.58 19.82 7.55 86.64 0.65 20.47 16 12 O -0.56 -24.53 12.55 -4.07 -0.05 -24.58 16 13 N -0.65 -19.21 5.33 -306.55 -1.63 -20.84 16 14 C 0.19 6.97 6.27 38.15 0.24 7.21 16 15 C -0.20 -6.14 9.96 22.43 0.22 -5.92 16 16 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 17 C -0.25 -11.28 9.13 22.42 0.20 -11.07 16 18 C 0.13 6.97 6.64 22.56 0.15 7.12 16 19 O -0.24 -15.34 9.76 -22.76 -0.22 -15.56 16 20 C -0.42 -25.30 9.44 67.92 0.64 -24.66 16 21 H 0.11 5.80 5.29 -2.91 -0.02 5.78 16 22 C -0.03 -1.57 5.49 84.83 0.47 -1.11 16 23 N -0.92 -59.57 13.67 21.62 0.30 -59.27 16 24 Si 1.02 44.12 29.55 68.60 2.03 46.15 16 25 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 28 C -0.21 -10.71 8.59 22.51 0.19 -10.52 16 29 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.14 3.91 6.48 -2.39 -0.02 3.89 16 33 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.26 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.19 1.65 7.75 -2.91 -0.02 1.62 16 36 H 0.43 8.32 8.01 -92.71 -0.74 7.58 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.13 5.54 5.71 -2.91 -0.02 5.53 16 40 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 41 H 0.09 5.15 6.44 -2.91 -0.02 5.13 16 Total: -1.00 -94.72 366.01 6.65 -88.08 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.37 Total: 30.38 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 6.01 Total: -10.37 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.34 Total: -80.11 kcal Atomic # 8 Polarization: -73.70 SS G_CDS: -0.42 Total: -74.12 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -94.72 6.65 -88.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411271999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.883 kcal (2) G-P(sol) polarization free energy of solvation -94.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds