Wall clock time and date at job start Wed Apr 1 2020 03:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47109 * 2 1 4 4 C 1.53008 * 109.47105 * 240.00620 * 2 1 3 5 5 C 1.50700 * 109.46957 * 174.99776 * 4 2 1 6 6 H 1.08002 * 120.00302 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99592 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99580 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00407 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46989 * 89.99937 * 9 7 5 11 11 H 1.48494 * 109.47416 * 209.99998 * 9 7 5 12 12 H 1.48501 * 109.46922 * 329.99821 * 9 7 5 13 13 S 1.81000 * 109.47647 * 120.00180 * 2 1 3 14 14 C 1.76194 * 99.99948 * 295.00349 * 13 2 1 15 15 N 1.31288 * 126.48493 * 359.68320 * 14 13 2 16 16 N 1.28528 * 109.85759 * 179.88587 * 15 14 13 17 17 C 1.30292 * 110.07956 * 0.38902 * 16 15 14 18 18 C 1.50702 * 126.34421 * 179.76039 * 17 16 15 19 19 H 1.08996 * 110.01593 * 179.30010 * 18 17 16 20 20 C 1.53874 * 110.02873 * 300.68706 * 18 17 16 21 21 C 1.54161 * 108.70404 * 166.46956 * 20 18 17 22 22 S 1.82922 * 105.08629 * 332.08737 * 21 20 18 23 23 O 1.42107 * 109.35149 * 115.52227 * 22 21 20 24 24 O 1.42092 * 109.35475 * 248.72567 * 22 21 20 25 25 C 1.55055 * 110.02167 * 57.92531 * 18 17 16 26 26 N 1.36544 * 126.48762 * 179.97438 * 14 13 2 27 27 C 1.46499 * 127.13902 * 359.96185 * 26 14 13 28 28 H 1.09001 * 109.46652 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46778 * 299.99527 * 1 2 3 30 30 H 1.08992 * 109.47514 * 59.99814 * 1 2 3 31 31 H 1.08994 * 109.46765 * 294.99658 * 4 2 1 32 32 H 1.09000 * 109.47044 * 54.99558 * 4 2 1 33 33 H 0.97008 * 119.99601 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.64021 * 286.31561 * 20 18 17 35 35 H 1.08990 * 109.64704 * 46.74630 * 20 18 17 36 36 H 1.09008 * 110.32195 * 90.98982 * 21 20 18 37 37 H 1.08996 * 110.32021 * 213.08601 * 21 20 18 38 38 H 1.08992 * 110.79092 * 316.54166 * 25 18 17 39 39 H 1.09002 * 110.78922 * 80.00960 * 25 18 17 40 40 H 1.08998 * 109.47230 * 89.97347 * 27 26 14 41 41 H 1.08997 * 109.47529 * 209.97773 * 27 26 14 42 42 H 1.09002 * 109.46950 * 329.97486 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0853 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 5.5411 -1.0999 -2.4136 9 14 3.3015 -2.1083 -3.6956 10 1 2.9408 -1.1632 -4.7828 11 1 4.1599 -3.1890 -4.2437 12 1 2.0654 -2.7000 -3.1237 13 16 2.1335 -0.8533 1.4778 14 6 1.5441 0.2421 2.7257 15 7 0.8682 1.3514 2.5350 16 7 0.5987 1.8984 3.6664 17 6 1.0890 1.1818 4.6378 18 6 0.9913 1.4872 6.1103 19 1 1.4837 0.7044 6.6871 20 6 1.6401 2.8500 6.4100 21 6 1.2321 3.2901 7.8300 22 16 -0.3919 2.5016 8.1247 23 8 -0.2749 1.5652 9.1872 24 8 -1.4002 3.5019 8.1679 25 6 -0.4966 1.6009 6.5314 26 7 1.7084 0.1008 4.0738 27 6 2.4042 -0.9836 4.7711 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 6.0255 -1.5067 -3.1492 34 1 2.7248 2.7601 6.3516 35 1 1.2940 3.5877 5.6861 36 1 1.9616 2.9384 8.5596 37 1 1.1420 4.3753 7.8787 38 1 -1.0631 2.1757 5.7989 39 1 -0.9352 0.6131 6.6728 40 1 3.4554 -0.7222 4.8922 41 1 1.9520 -1.1342 5.7514 42 1 2.3227 -1.9013 4.1886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412919175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:07 Heat of formation + Delta-G solvation = 3.102797 kcal Electronic energy + Delta-G solvation = -25548.745844 eV Core-core repulsion = 21783.875724 eV Total energy + Delta-G solvation = -3764.870121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.90015 -37.53051 -37.29705 -36.40206 -35.17460 -34.66448 -32.22752 -31.41702 -29.65692 -28.04260 -27.75569 -25.93560 -23.21416 -23.11419 -22.67171 -20.71385 -20.25838 -19.28284 -17.79534 -17.30676 -16.95495 -16.82374 -16.44571 -16.14928 -15.91425 -15.08613 -15.03742 -14.77122 -14.48619 -14.33427 -13.68151 -13.38057 -13.12932 -12.90068 -12.83606 -12.64961 -12.61256 -12.52851 -12.42230 -12.37305 -11.93143 -11.70413 -11.59734 -11.33869 -11.23154 -11.15343 -10.85560 -10.72300 -10.47296 -10.29661 -10.05886 -9.78012 -9.70359 -9.60613 -9.33614 -8.64236 -7.22777 -6.13825 -4.13555 -0.43789 1.42547 1.56366 2.05221 2.51430 2.72179 2.76110 3.13655 3.23723 3.31956 3.33455 3.51437 3.67636 3.95126 4.05699 4.22347 4.30852 4.35064 4.35535 4.42501 4.77910 4.86889 5.09878 5.15292 5.15816 5.19955 5.21927 5.38809 5.47939 5.52537 5.65526 5.71793 5.93353 5.95971 6.36636 6.36931 6.60793 6.62341 6.92514 7.07786 7.59535 8.39756 8.66709 8.91659 9.46554 10.98679 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.030668 B = 0.002279 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.779531 B =12285.532998 C =12539.060579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 H 0.098 0.902 4 C 0.000 4.000 5 C -0.526 4.526 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.265 1.265 13 S 0.026 5.974 14 C 0.171 3.829 15 N -0.295 5.295 16 N -0.275 5.275 17 C 0.168 3.832 18 C 0.008 3.992 19 H 0.109 0.891 20 C -0.107 4.107 21 C -0.589 4.589 22 S 2.392 3.608 23 O -0.936 6.936 24 O -0.933 6.933 25 C -0.581 4.581 26 N -0.467 5.467 27 C 0.069 3.931 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 3.047 21.208 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 H 0.116 0.884 4 C -0.039 4.039 5 C -0.564 4.564 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.256 5.744 14 C -0.202 4.202 15 N -0.139 5.139 16 N -0.115 5.115 17 C -0.103 4.103 18 C -0.014 4.014 19 H 0.127 0.873 20 C -0.146 4.146 21 C -0.719 4.719 22 S 2.575 3.425 23 O -0.933 6.933 24 O -0.930 6.930 25 C -0.711 4.711 26 N -0.161 5.161 27 C -0.074 4.074 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.882 3.127 21.257 23.249 hybrid contribution 0.335 -0.521 -0.975 1.156 sum -8.546 2.606 20.281 22.162 Atomic orbital electron populations 1.22168 0.93978 1.01931 1.02894 1.23425 0.97414 1.02899 0.94019 0.88408 1.19577 0.98072 0.95625 0.90638 1.21127 0.89113 1.35874 1.10290 0.90079 1.24980 0.94717 0.95652 0.97672 1.69906 1.06535 1.44825 1.32159 0.86867 0.80338 0.80120 0.82576 1.20110 1.21229 1.18913 1.86071 1.67608 1.26497 0.94197 1.27688 1.03227 1.01812 0.87495 1.74730 1.16614 1.05573 1.17021 1.73812 1.19234 1.23924 0.94506 1.23996 1.01264 0.88451 0.96549 1.20041 0.93377 0.99660 0.88342 0.87311 1.21960 1.03599 0.95430 0.93636 1.30499 1.22095 1.13920 1.05380 1.09011 0.78527 0.77154 0.77846 1.93634 1.86669 1.62271 1.50702 1.93637 1.54876 1.57965 1.86477 1.30828 1.02366 1.15578 1.22279 1.46246 1.43379 1.20809 1.05688 1.22179 0.97931 0.89167 0.98141 0.92629 0.91390 0.91811 0.95605 0.94573 0.92590 0.88406 0.88019 0.84248 0.83776 0.82992 0.84066 0.89453 0.89066 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.01 37.16 0.33 -2.17 16 2 C -0.05 -0.93 2.29 -26.73 -0.06 -1.00 16 3 H 0.10 2.03 8.14 -51.92 -0.42 1.60 16 4 C 0.00 0.00 3.51 -27.88 -0.10 -0.10 16 5 C -0.53 -14.04 9.09 -34.44 -0.31 -14.35 16 6 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 9 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 13 S 0.03 0.47 20.56 -107.50 -2.21 -1.74 16 14 C 0.17 2.79 7.75 -88.33 -0.68 2.11 16 15 N -0.29 -5.23 9.76 30.68 0.30 -4.93 16 16 N -0.27 -4.26 12.05 32.99 0.40 -3.87 16 17 C 0.17 2.00 6.63 -154.00 -1.02 0.98 16 18 C 0.01 0.06 2.98 -90.23 -0.27 -0.21 16 19 H 0.11 0.45 6.98 -51.93 -0.36 0.09 16 20 C -0.11 -0.62 5.74 -25.67 -0.15 -0.77 16 21 C -0.59 -2.35 7.26 37.76 0.27 -2.08 16 22 S 2.39 15.63 6.11 -107.50 -0.66 14.98 16 23 O -0.94 -8.90 18.15 -57.71 -1.05 -9.95 16 24 O -0.93 -9.77 18.15 -57.71 -1.05 -10.81 16 25 C -0.58 -3.69 6.66 38.24 0.25 -3.44 16 26 N -0.47 -5.86 3.21 -120.91 -0.39 -6.25 16 27 C 0.07 0.55 10.79 59.85 0.65 1.19 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.15 5.92 -51.93 -0.31 0.84 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 32 H 0.04 0.80 7.57 -51.93 -0.39 0.40 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.15 1.09 8.04 -51.93 -0.42 0.68 16 39 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.42 7.23 -51.93 -0.38 0.05 16 42 H 0.10 0.80 7.86 -51.93 -0.41 0.39 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -37.62 367.49 -10.21 -47.83 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.02 Total: -3.08 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.18 Total: -17.92 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.08 Total: -40.81 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -2.09 Total: -20.76 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 16.10 SS G_CDS: -2.87 Total: 13.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.62 -10.21 -47.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412919175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.934 kcal (2) G-P(sol) polarization free energy of solvation -37.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds