Wall clock time and date at job start Wed Apr 1 2020 03:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47109 * 2 1 4 4 C 1.53008 * 109.47105 * 240.00620 * 2 1 3 5 5 C 1.50700 * 109.46957 * 174.99776 * 4 2 1 6 6 H 1.08002 * 120.00302 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99592 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99580 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00407 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46989 * 89.99937 * 9 7 5 11 11 H 1.48494 * 109.47416 * 209.99998 * 9 7 5 12 12 H 1.48501 * 109.46922 * 329.99821 * 9 7 5 13 13 S 1.81000 * 109.47647 * 120.00180 * 2 1 3 14 14 C 1.76194 * 99.99948 * 295.00349 * 13 2 1 15 15 N 1.31288 * 126.48493 * 359.68320 * 14 13 2 16 16 N 1.28528 * 109.85759 * 179.88587 * 15 14 13 17 17 C 1.30292 * 110.07956 * 0.38902 * 16 15 14 18 18 C 1.50702 * 126.34421 * 179.76039 * 17 16 15 19 19 H 1.08996 * 110.01593 * 179.30010 * 18 17 16 20 20 C 1.53874 * 110.02873 * 300.68706 * 18 17 16 21 21 C 1.54161 * 108.70404 * 166.46956 * 20 18 17 22 22 S 1.82922 * 105.08629 * 332.08737 * 21 20 18 23 23 O 1.42107 * 109.35149 * 115.52227 * 22 21 20 24 24 O 1.42092 * 109.35475 * 248.72567 * 22 21 20 25 25 C 1.55055 * 110.02167 * 57.92531 * 18 17 16 26 26 N 1.36544 * 126.48762 * 179.97438 * 14 13 2 27 27 C 1.46499 * 127.13902 * 359.96185 * 26 14 13 28 28 H 1.09001 * 109.46652 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46778 * 299.99527 * 1 2 3 30 30 H 1.08992 * 109.47514 * 59.99814 * 1 2 3 31 31 H 1.08994 * 109.46765 * 294.99658 * 4 2 1 32 32 H 1.09000 * 109.47044 * 54.99558 * 4 2 1 33 33 H 0.97008 * 119.99601 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.64021 * 286.31561 * 20 18 17 35 35 H 1.08990 * 109.64704 * 46.74630 * 20 18 17 36 36 H 1.09008 * 110.32195 * 90.98982 * 21 20 18 37 37 H 1.08996 * 110.32021 * 213.08601 * 21 20 18 38 38 H 1.08992 * 110.79092 * 316.54166 * 25 18 17 39 39 H 1.09002 * 110.78922 * 80.00960 * 25 18 17 40 40 H 1.08998 * 109.47230 * 89.97347 * 27 26 14 41 41 H 1.08997 * 109.47529 * 209.97773 * 27 26 14 42 42 H 1.09002 * 109.46950 * 329.97486 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0853 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 5.5411 -1.0999 -2.4136 9 14 3.3015 -2.1083 -3.6956 10 1 2.9408 -1.1632 -4.7828 11 1 4.1599 -3.1890 -4.2437 12 1 2.0654 -2.7000 -3.1237 13 16 2.1335 -0.8533 1.4778 14 6 1.5441 0.2421 2.7257 15 7 0.8682 1.3514 2.5350 16 7 0.5987 1.8984 3.6664 17 6 1.0890 1.1818 4.6378 18 6 0.9913 1.4872 6.1103 19 1 1.4837 0.7044 6.6871 20 6 1.6401 2.8500 6.4100 21 6 1.2321 3.2901 7.8300 22 16 -0.3919 2.5016 8.1247 23 8 -0.2749 1.5652 9.1872 24 8 -1.4002 3.5019 8.1679 25 6 -0.4966 1.6009 6.5314 26 7 1.7084 0.1008 4.0738 27 6 2.4042 -0.9836 4.7711 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 6.0255 -1.5067 -3.1492 34 1 2.7248 2.7601 6.3516 35 1 1.2940 3.5877 5.6861 36 1 1.9616 2.9384 8.5596 37 1 1.1420 4.3753 7.8787 38 1 -1.0631 2.1757 5.7989 39 1 -0.9352 0.6131 6.6728 40 1 3.4554 -0.7222 4.8922 41 1 1.9520 -1.1342 5.7514 42 1 2.3227 -1.9013 4.1886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412919175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:06 Heat of formation + Delta-G solvation = -23.504510 kcal Electronic energy + Delta-G solvation = -25549.899624 eV Core-core repulsion = 21783.875724 eV Total energy + Delta-G solvation = -3766.023900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.97741 -38.16921 -37.89294 -37.05253 -36.59462 -35.91818 -34.17938 -32.20715 -30.53258 -29.71439 -28.55272 -26.55006 -24.97774 -23.98154 -23.68026 -22.15941 -21.21191 -19.83032 -18.91973 -18.75413 -17.96175 -17.68326 -17.44746 -17.00634 -16.68955 -16.47743 -16.28319 -15.73127 -15.31614 -14.99862 -14.87698 -14.43914 -14.26800 -14.08560 -13.96780 -13.56504 -13.47513 -13.36677 -13.24728 -13.15959 -13.13401 -13.00420 -12.68716 -12.61114 -12.39068 -12.09552 -11.85005 -11.80460 -11.69626 -11.56033 -11.45932 -11.37143 -11.23572 -11.04179 -10.77272 -10.72727 -8.57925 -8.25431 -6.30298 -0.95633 0.16036 0.54082 1.22866 1.38814 1.40125 1.48561 1.50650 1.63661 1.72636 2.37496 2.60821 2.95739 3.05129 3.09592 3.38952 3.50291 3.70367 3.76958 3.79959 3.99000 4.00132 4.12607 4.16131 4.28998 4.40083 4.49426 4.59615 4.66242 4.68185 4.85529 4.86387 4.88921 4.93757 4.96031 5.07182 5.10029 5.26149 5.33876 5.59920 5.71027 6.27712 6.76529 7.32988 7.54844 8.89903 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.030668 B = 0.002279 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.779531 B =12285.532998 C =12539.060579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 H 0.073 0.927 4 C 0.004 3.996 5 C -0.525 4.525 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.242 1.242 13 S 0.015 5.985 14 C 0.153 3.847 15 N -0.325 5.325 16 N -0.312 5.312 17 C 0.193 3.807 18 C 0.002 3.998 19 H 0.149 0.851 20 C -0.110 4.110 21 C -0.561 4.561 22 S 2.407 3.593 23 O -0.965 6.965 24 O -0.978 6.978 25 C -0.579 4.579 26 N -0.462 5.462 27 C 0.054 3.946 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 2.219 22.836 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 H 0.092 0.908 4 C -0.035 4.035 5 C -0.563 4.563 6 H 0.061 0.939 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.166 1.166 13 S 0.244 5.756 14 C -0.223 4.223 15 N -0.169 5.169 16 N -0.152 5.152 17 C -0.079 4.079 18 C -0.020 4.020 19 H 0.167 0.833 20 C -0.149 4.149 21 C -0.694 4.694 22 S 2.593 3.407 23 O -0.962 6.962 24 O -0.975 6.975 25 C -0.709 4.709 26 N -0.155 5.155 27 C -0.087 4.087 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.635 2.290 22.918 24.966 hybrid contribution 0.636 -0.167 -1.300 1.457 sum -8.999 2.123 21.618 23.512 Atomic orbital electron populations 1.22063 0.91636 1.02855 1.03245 1.23207 0.99227 1.01246 0.93909 0.90815 1.19482 0.95027 0.96442 0.92562 1.21346 0.91461 1.34533 1.08988 0.93934 1.25890 0.95486 0.96858 1.00411 1.70060 1.08498 1.46726 1.33421 0.85802 0.79622 0.78788 0.79392 1.19344 1.21232 1.16553 1.85831 1.68772 1.26732 0.94293 1.27269 1.04509 1.01719 0.88785 1.74631 1.17289 1.06303 1.18710 1.73748 1.21341 1.25329 0.94786 1.24838 0.98187 0.86835 0.97999 1.20471 0.94305 1.01814 0.85416 0.83296 1.21989 1.04411 0.94281 0.94231 1.30342 1.19583 1.14601 1.04829 1.08419 0.78988 0.76175 0.77068 1.93593 1.87370 1.63174 1.52041 1.93579 1.57773 1.59124 1.87043 1.30791 1.02072 1.16391 1.21620 1.46531 1.42853 1.21678 1.04454 1.22643 0.98855 0.87647 0.99560 0.91316 0.91731 0.90753 0.94834 0.93761 0.92554 0.86807 0.89490 0.81259 0.82216 0.84142 0.82501 0.88063 0.84877 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.01 71.98 0.65 -3.87 16 2 C -0.05 -1.81 2.29 30.60 0.07 -1.74 16 3 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 4 C 0.00 0.17 3.51 29.85 0.10 0.27 16 5 C -0.52 -28.70 9.09 25.60 0.23 -28.46 16 6 H 0.04 2.59 7.84 -2.91 -0.02 2.57 16 7 C 0.01 0.61 5.47 84.65 0.46 1.08 16 8 N -0.95 -57.64 13.96 21.45 0.30 -57.34 16 9 Si 0.94 42.24 27.47 68.60 1.88 44.13 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 13 S 0.01 0.52 20.56 -56.49 -1.16 -0.64 16 14 C 0.15 4.96 7.75 179.55 1.39 6.35 16 15 N -0.32 -11.64 9.76 -56.85 -0.55 -12.19 16 16 N -0.31 -9.60 12.05 -49.52 -0.60 -10.19 16 17 C 0.19 4.24 6.63 137.63 0.91 5.15 16 18 C 0.00 0.02 2.98 -10.54 -0.03 -0.01 16 19 H 0.15 0.45 6.98 -2.39 -0.02 0.43 16 20 C -0.11 -0.92 5.74 31.28 0.18 -0.74 16 21 C -0.56 -2.43 7.26 72.38 0.53 -1.91 16 22 S 2.41 26.95 6.11 -56.49 -0.34 26.60 16 23 O -0.96 -16.35 18.15 -127.49 -2.31 -18.66 16 24 O -0.98 -19.99 18.15 -127.49 -2.31 -22.30 16 25 C -0.58 -6.17 6.66 72.69 0.48 -5.69 16 26 N -0.46 -10.80 3.21 -536.44 -1.72 -12.52 16 27 C 0.05 0.70 10.79 127.77 1.38 2.08 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.17 5.92 -2.39 -0.01 2.15 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.03 1.44 7.20 -2.39 -0.02 1.43 16 32 H 0.04 1.89 7.57 -2.39 -0.02 1.87 16 33 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 34 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 36 H 0.17 -0.12 8.14 -2.38 -0.02 -0.14 16 37 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.14 1.92 8.04 -2.39 -0.02 1.91 16 39 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.13 0.60 7.23 -2.39 -0.02 0.59 16 42 H 0.09 1.35 7.86 -2.39 -0.02 1.34 16 Total: -1.00 -85.34 367.49 0.51 -84.83 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.98 Total: 5.79 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 6.36 Total: -27.49 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.58 Total: -92.24 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -4.63 Total: -40.97 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: 27.47 SS G_CDS: -1.51 Total: 25.96 kcal Total: -85.34 0.51 -84.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412919175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.323 kcal (2) G-P(sol) polarization free energy of solvation -85.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds