Wall clock time and date at job start Wed Apr 1 2020 04:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 C 1.53875 * 113.59428 * 277.59760 * 5 3 2 7 7 C 1.53274 * 86.92021 * 220.39068 * 6 5 3 8 8 C 1.53242 * 87.62172 * 25.13679 * 7 6 5 9 9 C 1.52657 * 113.82427 * 140.28227 * 7 6 5 10 10 C 1.52765 * 109.75268 * 70.88519 * 9 7 6 11 11 H 1.08996 * 109.19698 * 307.11235 * 10 9 7 12 12 N 1.46509 * 109.23057 * 187.72612 * 10 9 7 13 13 C 1.34773 * 119.99811 * 153.77281 * 12 10 9 14 14 O 1.21686 * 120.00318 * 0.02562 * 13 12 10 15 15 C 1.46375 * 119.99634 * 180.02562 * 13 12 10 16 16 H 1.07995 * 120.00269 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99716 * 180.02562 * 15 13 12 18 18 N 1.30667 * 119.99973 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99801 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47245 * 119.99694 * 19 17 15 22 22 H 1.48498 * 109.47156 * 240.00066 * 19 17 15 23 23 C 1.52540 * 110.71680 * 67.41263 * 10 9 7 24 24 C 1.53083 * 110.21801 * 288.23960 * 23 10 9 25 25 S 1.81420 * 113.44908 * 270.49740 * 7 6 5 26 26 O 1.42099 * 108.70004 * 34.59871 * 25 7 6 27 27 O 1.42097 * 108.70473 * 165.94403 * 25 7 6 28 28 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 30 30 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 31 31 H 1.08999 * 112.84059 * 48.84945 * 5 3 2 32 32 H 1.08994 * 113.64468 * 334.90198 * 6 5 3 33 33 H 1.09001 * 113.63727 * 105.88621 * 6 5 3 34 34 H 1.09004 * 113.63957 * 220.35604 * 8 7 6 35 35 H 1.09003 * 113.71610 * 89.38816 * 8 7 6 36 36 H 1.08998 * 109.42748 * 190.97872 * 9 7 6 37 37 H 1.09007 * 109.42572 * 310.80434 * 9 7 6 38 38 H 0.96996 * 119.99879 * 333.77703 * 12 10 9 39 39 H 0.97003 * 119.99910 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.34958 * 168.01074 * 23 10 9 41 41 H 1.08996 * 109.34552 * 48.46634 * 23 10 9 42 42 H 1.08998 * 109.59024 * 305.44972 * 24 23 10 43 43 H 1.09003 * 109.58999 * 185.01467 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1917 1.1205 1.3969 7 6 5.1703 2.2280 0.9905 8 6 4.1078 2.7151 -0.0005 9 6 5.4753 3.2220 2.1083 10 6 6.3335 2.5487 3.1779 11 1 5.8492 1.6260 3.4976 12 7 6.4653 3.4476 4.3273 13 6 6.6924 2.9419 5.5557 14 8 6.7885 1.7387 5.7101 15 6 6.8235 3.8400 6.7040 16 1 6.7386 4.9078 6.5669 17 6 7.0601 3.3145 7.9805 18 7 7.1633 2.0225 8.1463 19 14 7.2267 4.4605 9.4462 20 1 7.0704 5.8668 8.9953 21 1 6.1762 4.1413 10.4462 22 1 8.5664 4.2848 10.0623 23 6 7.7206 2.2250 2.6319 24 6 7.6394 1.0665 1.6344 25 16 6.6743 1.6046 0.1901 26 8 6.3379 0.4619 -0.5846 27 8 7.3451 2.6931 -0.4300 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 4.0232 0.6369 -0.7573 32 1 3.5226 1.4047 2.2090 33 1 4.6684 0.1536 1.5580 34 1 4.5170 3.0283 -0.9611 35 1 3.4147 3.4426 0.4221 36 1 6.0128 4.0764 1.6970 37 1 4.5413 3.5632 2.5549 38 1 6.3890 4.4067 4.2041 39 1 7.3275 1.6585 9.0304 40 1 8.3771 1.9464 3.4561 41 1 8.1260 3.1044 2.1316 42 1 7.1494 0.2136 2.1040 43 1 8.6439 0.7852 1.3185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413761273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:50 Heat of formation + Delta-G solvation = -172.506642 kcal Electronic energy + Delta-G solvation = -29295.690838 eV Core-core repulsion = 25048.160098 eV Total energy + Delta-G solvation = -4247.530740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18366 -39.44632 -37.94447 -37.06939 -36.57294 -36.13665 -35.26722 -32.61581 -31.80103 -30.40427 -28.34088 -26.89515 -26.35933 -25.48295 -24.17438 -21.99392 -21.01589 -20.35029 -19.62161 -18.54445 -17.96738 -17.43670 -16.92045 -16.69866 -16.52268 -16.45435 -15.72989 -15.45603 -15.10569 -14.54192 -14.42857 -14.21879 -13.95864 -13.63410 -13.39981 -13.01334 -12.89348 -12.82275 -12.77179 -12.38132 -12.23563 -12.18802 -12.13343 -12.07833 -11.93516 -11.47615 -11.19043 -11.17674 -11.05462 -11.03199 -10.93735 -10.71767 -10.61787 -10.55086 -10.38129 -10.23681 -9.93472 -8.95079 -7.77256 -7.69969 -6.28694 -4.74216 -0.06737 1.92500 2.45079 2.54547 3.07248 3.16261 3.20140 3.37774 3.55696 3.93783 3.98868 4.04279 4.20764 4.36491 4.46269 4.56712 4.71921 4.79037 4.85459 4.87970 4.93885 5.03611 5.15629 5.22445 5.24360 5.28512 5.34141 5.45925 5.53409 5.57714 5.70209 5.75813 5.83850 5.89019 6.05353 6.12714 6.37350 6.53229 7.34895 7.49956 7.79078 7.93655 8.22110 8.93572 9.38744 10.48436 10.66391 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003256 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.580388 B = 8597.458195 C = 9982.822886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.478 3.522 4 O -0.505 6.505 5 C -0.130 4.130 6 C -0.075 4.075 7 C -0.567 4.567 8 C -0.074 4.074 9 C -0.094 4.094 10 C 0.141 3.859 11 H 0.088 0.912 12 N -0.759 5.759 13 C 0.554 3.446 14 O -0.578 6.578 15 C -0.544 4.544 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.123 4.123 24 C -0.587 4.587 25 S 2.430 3.570 26 O -0.941 6.941 27 O -0.933 6.933 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -1.951 -15.537 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.320 3.680 4 O -0.392 6.392 5 C -0.149 4.149 6 C -0.113 4.113 7 C -0.656 4.656 8 C -0.112 4.112 9 C -0.133 4.133 10 C 0.034 3.966 11 H 0.106 0.894 12 N -0.413 5.413 13 C 0.359 3.641 14 O -0.461 6.461 15 C -0.581 4.581 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.163 4.163 24 C -0.718 4.718 25 S 2.611 3.389 26 O -0.938 6.938 27 O -0.930 6.930 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.215 0.785 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.156 0.844 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.996 -2.738 -16.185 17.844 hybrid contribution -0.322 1.025 1.505 1.849 sum -7.318 -1.713 -14.680 16.492 Atomic orbital electron populations 1.23299 0.76296 1.03815 1.02584 1.86536 1.23433 1.33285 1.83808 1.23378 0.91350 0.81367 0.71869 1.90668 1.66922 1.36395 1.45249 1.22975 0.88473 1.01088 1.02404 1.22559 0.96133 0.97234 0.95384 1.31387 1.16559 1.08227 1.09476 1.22596 0.95148 0.95379 0.98044 1.21523 1.02686 0.96322 0.92754 1.20548 0.92790 0.96197 0.87097 0.89424 1.46157 1.80472 1.08047 1.06653 1.18246 0.76375 0.88617 0.80864 1.90601 1.55223 1.15975 1.84300 1.20917 1.52412 0.93581 0.91204 0.91309 1.25704 0.92719 0.95050 0.99769 1.70015 1.34405 1.11989 1.23079 0.86318 0.78293 0.81059 0.81108 1.18754 1.20160 1.20155 1.21822 1.00953 0.94795 0.98687 1.30103 1.14644 1.09765 1.17298 1.07849 0.77444 0.75784 0.77794 1.93555 1.83416 1.50240 1.66563 1.93572 1.71919 1.54528 1.73028 0.87989 0.91904 0.91763 0.83596 0.87211 0.88506 0.89399 0.86310 0.89662 0.89004 0.78495 0.92101 0.88334 0.90510 0.84426 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.84 10.56 -39.24 -0.41 -4.25 16 3 C 0.48 5.60 7.48 36.00 0.27 5.87 16 4 O -0.50 -6.98 15.64 -18.76 -0.29 -7.28 16 5 C -0.13 -1.36 3.84 -90.86 -0.35 -1.71 16 6 C -0.07 -0.78 6.06 -26.13 -0.16 -0.94 16 7 C -0.57 -6.15 0.91 -90.53 -0.08 -6.23 16 8 C -0.07 -0.75 6.58 -26.15 -0.17 -0.92 16 9 C -0.09 -1.13 4.43 -27.03 -0.12 -1.25 16 10 C 0.14 2.23 2.20 -68.28 -0.15 2.08 16 11 H 0.09 1.53 6.97 -51.93 -0.36 1.16 16 12 N -0.76 -14.89 5.04 -55.56 -0.28 -15.17 16 13 C 0.55 14.43 7.64 -12.99 -0.10 14.33 16 14 O -0.58 -17.15 14.66 5.20 0.08 -17.07 16 15 C -0.54 -14.49 9.54 -35.63 -0.34 -14.83 16 16 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 17 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 18 N -0.77 -21.96 11.83 55.55 0.66 -21.30 16 19 Si 0.91 19.39 29.56 -169.99 -5.02 14.36 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 23 C -0.12 -1.81 5.25 -26.92 -0.14 -1.95 16 24 C -0.59 -6.90 6.37 37.20 0.24 -6.67 16 25 S 2.43 28.75 4.64 -107.50 -0.50 28.25 16 26 O -0.94 -12.41 16.14 -57.81 -0.93 -13.35 16 27 O -0.93 -13.51 18.06 -57.81 -1.04 -14.56 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.15 1.43 6.79 -51.93 -0.35 1.07 16 32 H 0.11 1.16 8.05 -51.93 -0.42 0.74 16 33 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.12 1.21 7.39 -51.93 -0.38 0.83 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.38 6.57 8.58 -40.82 -0.35 6.22 16 39 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 40 H 0.10 1.76 8.07 -51.93 -0.42 1.34 16 41 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.14 1.48 8.12 -51.93 -0.42 1.05 16 43 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -36.84 366.96 -8.40 -45.24 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.04 Total: 8.23 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.13 Total: -8.63 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.38 Total: -36.47 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -2.61 Total: -56.50 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 28.75 SS G_CDS: -0.50 Total: 28.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.84 -8.40 -45.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413761273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.262 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds