Wall clock time and date at job start Wed Apr 1 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00572 * 2 1 4 4 O 1.20835 * 119.99735 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00487 * 180.02562 * 3 2 1 6 6 C 1.53875 * 113.59428 * 277.59760 * 5 3 2 7 7 C 1.53274 * 86.92021 * 220.39068 * 6 5 3 8 8 C 1.53242 * 87.62172 * 25.13679 * 7 6 5 9 9 C 1.52657 * 113.82427 * 140.28227 * 7 6 5 10 10 C 1.52765 * 109.75268 * 70.88519 * 9 7 6 11 11 H 1.08996 * 109.19698 * 307.11235 * 10 9 7 12 12 N 1.46509 * 109.23057 * 187.72612 * 10 9 7 13 13 C 1.34773 * 119.99811 * 153.77281 * 12 10 9 14 14 O 1.21686 * 120.00318 * 0.02562 * 13 12 10 15 15 C 1.46375 * 119.99634 * 180.02562 * 13 12 10 16 16 H 1.07995 * 120.00269 * 359.97438 * 15 13 12 17 17 C 1.40055 * 119.99716 * 180.02562 * 15 13 12 18 18 N 1.30667 * 119.99973 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99801 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47245 * 119.99694 * 19 17 15 22 22 H 1.48498 * 109.47156 * 240.00066 * 19 17 15 23 23 C 1.52540 * 110.71680 * 67.41263 * 10 9 7 24 24 C 1.53083 * 110.21801 * 288.23960 * 23 10 9 25 25 S 1.81420 * 113.44908 * 270.49740 * 7 6 5 26 26 O 1.42099 * 108.70004 * 34.59871 * 25 7 6 27 27 O 1.42097 * 108.70473 * 165.94403 * 25 7 6 28 28 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46782 * 60.00258 * 1 2 3 30 30 H 1.09004 * 109.47085 * 300.00378 * 1 2 3 31 31 H 1.08999 * 112.84059 * 48.84945 * 5 3 2 32 32 H 1.08994 * 113.64468 * 334.90198 * 6 5 3 33 33 H 1.09001 * 113.63727 * 105.88621 * 6 5 3 34 34 H 1.09004 * 113.63957 * 220.35604 * 8 7 6 35 35 H 1.09003 * 113.71610 * 89.38816 * 8 7 6 36 36 H 1.08998 * 109.42748 * 190.97872 * 9 7 6 37 37 H 1.09007 * 109.42572 * 310.80434 * 9 7 6 38 38 H 0.96996 * 119.99879 * 333.77703 * 12 10 9 39 39 H 0.97003 * 119.99910 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.34958 * 168.01074 * 23 10 9 41 41 H 1.08996 * 109.34552 * 48.46634 * 23 10 9 42 42 H 1.08998 * 109.59024 * 305.44972 * 24 23 10 43 43 H 1.09003 * 109.58999 * 185.01467 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1917 1.1205 1.3969 7 6 5.1703 2.2280 0.9905 8 6 4.1078 2.7151 -0.0005 9 6 5.4753 3.2220 2.1083 10 6 6.3335 2.5487 3.1779 11 1 5.8492 1.6260 3.4976 12 7 6.4653 3.4476 4.3273 13 6 6.6924 2.9419 5.5557 14 8 6.7885 1.7387 5.7101 15 6 6.8235 3.8400 6.7040 16 1 6.7386 4.9078 6.5669 17 6 7.0601 3.3145 7.9805 18 7 7.1633 2.0225 8.1463 19 14 7.2267 4.4605 9.4462 20 1 7.0704 5.8668 8.9953 21 1 6.1762 4.1413 10.4462 22 1 8.5664 4.2848 10.0623 23 6 7.7206 2.2250 2.6319 24 6 7.6394 1.0665 1.6344 25 16 6.6743 1.6046 0.1901 26 8 6.3379 0.4619 -0.5846 27 8 7.3451 2.6931 -0.4300 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 4.0232 0.6369 -0.7573 32 1 3.5226 1.4047 2.2090 33 1 4.6684 0.1536 1.5580 34 1 4.5170 3.0283 -0.9611 35 1 3.4147 3.4426 0.4221 36 1 6.0128 4.0764 1.6970 37 1 4.5413 3.5632 2.5549 38 1 6.3890 4.4067 4.2041 39 1 7.3275 1.6585 9.0304 40 1 8.3771 1.9464 3.4561 41 1 8.1260 3.1044 2.1316 42 1 7.1494 0.2136 2.1040 43 1 8.6439 0.7852 1.3185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413761273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:49 Heat of formation + Delta-G solvation = -200.474054 kcal Electronic energy + Delta-G solvation = -29296.903596 eV Core-core repulsion = 25048.160098 eV Total energy + Delta-G solvation = -4248.743498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07341 -40.48173 -39.41992 -38.22880 -37.53702 -37.21197 -36.68573 -34.59162 -33.37763 -31.47735 -29.27697 -28.44823 -27.19186 -26.80871 -25.20875 -23.08725 -22.29752 -21.36675 -21.16217 -19.57176 -19.25315 -18.74318 -17.83643 -17.69781 -17.52736 -17.43628 -17.24464 -16.74804 -16.57264 -15.92096 -15.51743 -15.29889 -15.06338 -14.73325 -14.54004 -14.39904 -14.16496 -13.86083 -13.74883 -13.58165 -13.51293 -13.27701 -13.18871 -13.13426 -12.93870 -12.83029 -12.79944 -12.59280 -12.49564 -12.11110 -12.00219 -11.97386 -11.83871 -11.69806 -11.56302 -11.43129 -10.97357 -10.92803 -9.81028 -9.47301 -8.27372 -6.82089 -1.04902 1.02676 1.40388 1.42024 1.57690 1.58248 1.68304 2.24386 2.43922 2.49740 2.57724 3.02154 3.05155 3.19198 3.30951 3.52325 3.62547 3.74564 3.85837 3.94473 4.02824 4.18340 4.19258 4.27503 4.28430 4.31593 4.43489 4.51303 4.62829 4.66698 4.69977 4.74539 4.84194 4.92259 5.02222 5.15208 5.25657 5.30665 5.35319 5.92245 6.26828 6.30564 6.63010 6.90576 7.58292 8.52400 8.70105 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.003256 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.580388 B = 8597.458195 C = 9982.822886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.479 3.521 4 O -0.530 6.530 5 C -0.129 4.129 6 C -0.080 4.080 7 C -0.559 4.559 8 C -0.072 4.072 9 C -0.085 4.085 10 C 0.137 3.863 11 H 0.069 0.931 12 N -0.748 5.748 13 C 0.543 3.457 14 O -0.624 6.624 15 C -0.574 4.574 16 H 0.085 0.915 17 C 0.031 3.969 18 N -0.819 5.819 19 Si 0.991 3.009 20 H -0.249 1.249 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.121 4.121 24 C -0.589 4.589 25 S 2.453 3.547 26 O -0.950 6.950 27 O -0.955 6.955 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.397 0.603 39 H 0.273 0.727 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.146 0.854 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 -0.892 -16.313 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.323 3.677 4 O -0.420 6.420 5 C -0.148 4.148 6 C -0.118 4.118 7 C -0.649 4.649 8 C -0.110 4.110 9 C -0.123 4.123 10 C 0.031 3.969 11 H 0.087 0.913 12 N -0.401 5.401 13 C 0.347 3.653 14 O -0.510 6.510 15 C -0.610 4.610 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.812 3.188 20 H -0.172 1.172 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.161 4.161 24 C -0.720 4.720 25 S 2.636 3.364 26 O -0.947 6.947 27 O -0.953 6.953 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.165 0.835 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.445 -1.658 -17.022 18.653 hybrid contribution -0.242 0.646 1.676 1.812 sum -7.686 -1.012 -15.346 17.193 Atomic orbital electron populations 1.23579 0.74764 1.05768 1.02605 1.86527 1.25035 1.32800 1.83398 1.23581 0.91775 0.81256 0.71113 1.90654 1.67558 1.37166 1.46584 1.23022 0.87831 1.01497 1.02468 1.22650 0.96012 0.97725 0.95455 1.31243 1.16242 1.08220 1.09214 1.22658 0.94573 0.95342 0.98427 1.21415 1.02306 0.96751 0.91871 1.20755 0.94150 0.95183 0.86847 0.91271 1.45779 1.78903 1.09250 1.06188 1.18459 0.76013 0.88023 0.82766 1.90558 1.57141 1.17744 1.85592 1.21468 1.52758 0.94606 0.92190 0.89650 1.26859 0.91608 0.96705 1.03211 1.70168 1.35953 1.14534 1.24217 0.85057 0.78338 0.78982 0.76460 1.17170 1.19602 1.19623 1.21687 0.99389 0.96700 0.98323 1.30136 1.16358 1.08930 1.16556 1.07146 0.77123 0.74969 0.77202 1.93541 1.83570 1.50661 1.66963 1.93544 1.72725 1.55262 1.73721 0.85159 0.91555 0.92113 0.82730 0.87490 0.87303 0.87866 0.86162 0.87845 0.88436 0.76908 0.91720 0.91996 0.88947 0.83544 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.38 10.56 -51.36 -0.54 -7.92 16 3 C 0.48 10.69 7.48 71.23 0.53 11.22 16 4 O -0.53 -14.19 15.64 21.94 0.34 -13.84 16 5 C -0.13 -2.48 3.84 -10.95 -0.04 -2.53 16 6 C -0.08 -1.57 6.06 30.98 0.19 -1.38 16 7 C -0.56 -11.15 0.91 -10.74 -0.01 -11.16 16 8 C -0.07 -1.31 6.58 30.97 0.20 -1.11 16 9 C -0.08 -1.90 4.43 30.40 0.13 -1.77 16 10 C 0.14 4.31 2.20 44.76 0.10 4.40 16 11 H 0.07 2.46 6.97 -2.39 -0.02 2.44 16 12 N -0.75 -29.43 5.04 -447.92 -2.26 -31.69 16 13 C 0.54 28.97 7.64 86.36 0.66 29.63 16 14 O -0.62 -38.45 14.66 -4.30 -0.06 -38.51 16 15 C -0.57 -30.79 9.54 24.83 0.24 -30.55 16 16 H 0.09 4.13 7.85 -2.91 -0.02 4.10 16 17 C 0.03 1.69 5.50 85.31 0.47 2.16 16 18 N -0.82 -48.22 11.83 21.84 0.26 -47.96 16 19 Si 0.99 39.69 29.56 68.60 2.03 41.72 16 20 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 23 C -0.12 -3.56 5.25 30.47 0.16 -3.40 16 24 C -0.59 -13.26 6.37 72.01 0.46 -12.80 16 25 S 2.45 53.54 4.64 -56.49 -0.26 53.28 16 26 O -0.95 -23.16 16.14 -127.39 -2.06 -25.22 16 27 O -0.96 -25.69 18.06 -127.39 -2.30 -27.99 16 28 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 30 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 31 H 0.16 2.71 6.79 -2.39 -0.02 2.70 16 32 H 0.11 2.18 8.05 -2.39 -0.02 2.16 16 33 H 0.11 1.84 8.09 -2.39 -0.02 1.82 16 34 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 35 H 0.12 2.22 7.39 -2.39 -0.02 2.20 16 36 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 37 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.40 13.32 8.58 -92.71 -0.80 12.52 16 39 H 0.27 14.60 8.29 -92.71 -0.77 13.84 16 40 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 41 H 0.09 2.38 8.04 -2.39 -0.02 2.36 16 42 H 0.15 3.04 8.12 -2.39 -0.02 3.03 16 43 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -80.96 366.96 -0.32 -81.28 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.25 Total: 32.58 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.29 Total: -15.71 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.00 Total: -79.65 kcal Atomic # 8 Polarization: -108.87 SS G_CDS: -4.62 Total: -113.49 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.26 Total: 53.28 kcal Total: -80.96 -0.32 -81.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413761273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.197 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds