Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46820 * 2 1 4 4 C 1.46500 * 119.99441 * 84.99867 * 3 2 1 5 5 C 1.50694 * 109.47517 * 274.99991 * 4 3 2 6 6 H 1.08002 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 S 1.65593 * 119.99998 * 265.00335 * 3 2 1 14 14 O 1.42097 * 104.28075 * 26.07137 * 13 3 2 15 15 O 1.42109 * 104.27702 * 153.93087 * 13 3 2 16 16 C 1.81401 * 104.44837 * 269.99661 * 13 3 2 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 13 3 18 18 H 1.09008 * 110.33175 * 307.25282 * 17 16 13 19 19 C 1.54476 * 110.37433 * 185.00236 * 17 16 13 20 20 C 1.54509 * 104.06406 * 217.18882 * 19 17 16 21 21 C 1.54477 * 104.06092 * 0.02562 * 20 19 17 22 22 H 1.09000 * 110.36891 * 265.14050 * 21 20 19 23 23 C 1.53004 * 110.37353 * 142.92197 * 21 20 19 24 24 F 1.39898 * 109.47219 * 59.99460 * 23 21 20 25 25 F 1.39892 * 109.47258 * 179.97438 * 23 21 20 26 26 F 1.39905 * 109.46578 * 299.99732 * 23 21 20 27 27 O 1.44425 * 104.80708 * 23.97715 * 21 20 19 28 28 H 1.08999 * 109.47712 * 60.00092 * 1 2 3 29 29 H 1.09002 * 109.46629 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47098 * 299.99555 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00445 * 2 1 3 32 32 H 1.08992 * 109.47403 * 120.00138 * 2 1 3 33 33 H 1.09005 * 109.46643 * 155.00522 * 4 3 2 34 34 H 1.08998 * 109.47481 * 35.00356 * 4 3 2 35 35 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47237 * 300.00246 * 16 13 3 37 37 H 1.09004 * 109.46724 * 60.00357 * 16 13 3 38 38 H 1.09005 * 110.51121 * 335.83815 * 19 17 16 39 39 H 1.09000 * 110.51201 * 98.54282 * 19 17 16 40 40 H 1.09003 * 110.51075 * 118.64028 * 20 19 17 41 41 H 1.08997 * 110.51060 * 241.35359 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 1.2640 5 6 0.8359 2.7287 1.6357 6 1 -0.0229 2.5941 0.9948 7 6 0.7224 3.4679 2.7941 8 7 1.7681 3.6314 3.5747 9 14 -0.9164 4.2371 3.2545 10 1 -0.7746 4.9743 4.5357 11 1 -1.3395 5.1775 2.1860 12 1 -1.9380 3.1704 3.4081 13 16 2.4120 2.1203 -1.4286 14 8 1.6207 1.4497 -2.3999 15 8 2.2332 3.5057 -1.1675 16 6 4.1696 1.7391 -1.6661 17 6 4.6580 2.3754 -2.9690 18 1 4.0115 2.0858 -3.7975 19 6 6.1181 1.9605 -3.2558 20 6 6.7560 3.2290 -3.8652 21 6 5.6060 4.2604 -3.8738 22 1 5.1050 4.2619 -4.8418 23 6 6.1406 5.6569 -3.5498 24 9 7.0914 6.0261 -4.5073 25 9 5.0851 6.5749 -3.5631 26 9 6.7343 5.6466 -2.2830 27 8 4.7017 3.8135 -2.8402 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9078 2.8919 1.1513 34 1 2.4689 1.4183 2.0481 35 1 1.6884 4.1518 4.3895 36 1 4.7440 2.1378 -0.8298 37 1 4.3034 0.6585 -1.7165 38 1 6.6253 1.6842 -2.3314 39 1 6.1480 1.1373 -3.9697 40 1 7.5786 3.5799 -3.2419 41 1 7.1013 3.0329 -4.8802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414209757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = -266.359406 kcal Electronic energy + Delta-G solvation = -30058.598236 eV Core-core repulsion = 25265.140994 eV Total energy + Delta-G solvation = -4793.457241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.23976 -47.79141 -47.66595 -40.04458 -36.50979 -36.05891 -35.17729 -32.93478 -32.59796 -32.53941 -29.80270 -28.43572 -26.72202 -24.49994 -22.75972 -22.38994 -21.92486 -21.50880 -18.81672 -18.58171 -18.22037 -17.98706 -17.15273 -16.68960 -16.54847 -16.10925 -15.73823 -15.32334 -14.69494 -14.51532 -14.44852 -14.42208 -14.19300 -14.10706 -13.83209 -13.81837 -13.79581 -13.07598 -12.95920 -12.90360 -12.57824 -12.35587 -12.17348 -12.12864 -11.82882 -11.66312 -11.44435 -11.38090 -11.20155 -11.13297 -10.94540 -10.92763 -10.53707 -10.41143 -10.37862 -10.15138 -9.85434 -9.54847 -8.37493 -8.04295 -6.00256 -4.02364 0.78560 2.26634 3.04312 3.32099 3.38264 3.41909 3.47542 3.49098 3.69335 4.04144 4.22031 4.28731 4.30007 4.48722 4.50758 4.58822 4.61519 4.75115 4.88690 5.04642 5.26040 5.29769 5.35880 5.39450 5.42201 5.52107 5.69566 5.85466 5.97657 6.13204 6.16928 6.42031 6.72759 7.02967 7.22192 7.42654 7.63600 7.97693 8.27283 8.99110 9.61754 11.08748 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.003742 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.150592 B = 7480.806874 C = 8756.114771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.986 5.986 4 C 0.255 3.745 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.277 1.277 13 S 2.604 3.396 14 O -0.972 6.972 15 O -0.918 6.918 16 C -0.647 4.647 17 C 0.086 3.914 18 H 0.092 0.908 19 C -0.139 4.139 20 C -0.150 4.150 21 C 0.026 3.974 22 H 0.118 0.882 23 C 0.463 3.537 24 F -0.178 7.178 25 F -0.171 7.171 26 F -0.171 7.171 27 O -0.337 6.337 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 -5.597 -15.772 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 N -0.825 5.825 4 C 0.134 3.866 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.213 1.213 11 H -0.200 1.200 12 H -0.202 1.202 13 S 2.693 3.307 14 O -0.962 6.962 15 O -0.908 6.908 16 C -0.772 4.772 17 C 0.028 3.972 18 H 0.109 0.891 19 C -0.177 4.177 20 C -0.188 4.188 21 C -0.033 4.033 22 H 0.136 0.864 23 C 0.409 3.591 24 F -0.160 7.160 25 F -0.152 7.152 26 F -0.152 7.152 27 O -0.256 6.256 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.687 -4.856 -15.945 20.357 hybrid contribution -0.029 0.309 0.582 0.659 sum 11.659 -4.547 -15.363 19.814 Atomic orbital electron populations 1.22245 0.96227 1.00737 1.03876 1.20980 0.95169 0.82230 1.00885 1.57590 1.77820 1.23131 1.24007 1.19097 0.97822 0.90973 0.78749 1.21453 0.96243 1.31710 1.06556 0.91888 1.24918 0.96802 0.96039 0.96292 1.69906 1.29304 1.40805 1.13757 0.86612 0.83925 0.79573 0.77683 1.21279 1.20008 1.20247 1.05322 0.76513 0.75099 0.73783 1.93525 1.64733 1.76550 1.61403 1.93664 1.83491 1.30448 1.83215 1.30979 1.31549 1.09930 1.04720 1.22687 0.98261 0.80386 0.95904 0.89064 1.22971 0.94158 0.97733 1.02860 1.23024 0.97591 0.94389 1.03805 1.24169 0.93358 0.90712 0.95106 0.86448 1.20117 0.76005 0.88248 0.74767 1.93189 1.65712 1.92762 1.64318 1.93248 1.56626 1.69257 1.96097 1.93224 1.84286 1.96810 1.40913 1.89427 1.63803 1.20276 1.52049 0.92575 0.93201 0.90296 0.92215 0.91090 0.94374 0.94717 0.92741 0.83836 0.84016 0.89090 0.89105 0.89043 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.83 37.16 0.37 -2.66 16 2 C 0.13 2.23 6.00 -4.04 -0.02 2.21 16 3 N -0.99 -19.73 2.73 -115.66 -0.32 -20.05 16 4 C 0.26 6.26 5.03 -5.20 -0.03 6.24 16 5 C -0.52 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.76 6.89 -52.49 -0.36 1.40 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 S 2.60 49.40 5.24 -107.50 -0.56 48.84 16 14 O -0.97 -19.08 16.75 -57.54 -0.96 -20.04 16 15 O -0.92 -22.09 16.79 -57.62 -0.97 -23.06 16 16 C -0.65 -8.43 5.79 37.16 0.22 -8.21 16 17 C 0.09 1.01 3.24 -25.96 -0.08 0.93 16 18 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 19 C -0.14 -1.10 6.63 -25.16 -0.17 -1.27 16 20 C -0.15 -1.14 6.34 -25.16 -0.16 -1.30 16 21 C 0.03 0.28 3.26 -25.95 -0.08 0.19 16 22 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 23 C 0.46 5.61 2.85 37.16 0.11 5.71 16 24 F -0.18 -1.85 17.07 2.25 0.04 -1.81 16 25 F -0.17 -2.45 17.32 2.25 0.04 -2.41 16 26 F -0.17 -2.36 16.56 2.25 0.04 -2.32 16 27 O -0.34 -4.95 10.66 -35.23 -0.38 -5.33 16 28 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 31 H 0.06 0.82 7.61 -51.93 -0.40 0.42 16 32 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 33 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 34 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.14 1.87 8.14 -51.92 -0.42 1.45 16 37 H 0.14 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.70 7.39 -51.93 -0.38 0.32 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -35.23 363.29 -7.75 -42.98 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.62 Total: -2.51 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.25 Total: -11.26 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.42 Total: -45.63 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.31 Total: -48.43 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 49.40 SS G_CDS: -0.56 Total: 48.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.23 -7.75 -42.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414209757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.384 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds