Wall clock time and date at job start Wed Apr 1 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99900 * 2 1 4 4 C 1.50700 * 109.47063 * 269.99553 * 3 2 1 5 5 H 1.08003 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00136 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00143 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99994 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.46782 * 89.99678 * 8 6 4 10 10 H 1.48499 * 109.47509 * 209.99662 * 8 6 4 11 11 H 1.48505 * 109.47206 * 330.00211 * 8 6 4 12 12 C 1.34772 * 119.99726 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99792 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00268 * 359.97438 * 12 2 1 15 15 N 1.46493 * 109.47159 * 179.97438 * 14 12 2 16 16 C 1.39845 * 119.99915 * 179.97438 * 15 14 12 17 17 C 1.38829 * 120.07970 * 359.72638 * 16 15 14 18 18 C 1.38160 * 119.94806 * 180.25473 * 17 16 15 19 19 C 1.38272 * 120.11079 * 0.04523 * 18 17 16 20 20 S 1.76199 * 119.91621 * 179.97438 * 19 18 17 21 21 N 1.65594 * 107.21796 * 269.97589 * 20 19 18 22 22 O 1.42107 * 106.40312 * 23.51710 * 20 19 18 23 23 O 1.42100 * 106.40297 * 156.43403 * 20 19 18 24 24 C 1.38285 * 120.16146 * 359.95082 * 19 18 17 25 25 C 1.38271 * 120.05284 * 0.03049 * 24 19 18 26 26 F 1.35095 * 120.05991 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47495 * 270.00521 * 1 2 3 28 28 H 1.09002 * 109.46972 * 30.00545 * 1 2 3 29 29 H 1.09003 * 109.47000 * 149.99705 * 1 2 3 30 30 H 1.08995 * 109.47380 * 29.99761 * 3 2 1 31 31 H 1.09003 * 109.47159 * 149.99777 * 3 2 1 32 32 H 0.97004 * 120.00099 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46875 * 59.99885 * 14 12 2 34 34 H 1.09005 * 109.47243 * 300.00149 * 14 12 2 35 35 H 0.96994 * 120.00318 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.02809 * 0.25021 * 17 16 15 37 37 H 1.07998 * 119.93966 * 180.02562 * 18 17 16 38 38 H 0.97002 * 120.00135 * 150.00077 * 21 20 19 39 39 H 0.97004 * 120.00228 * 329.99849 * 21 20 19 40 40 H 1.08004 * 119.97253 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7329 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7478 5.3560 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3373 -3.5858 0.0014 16 6 1.8711 -4.9042 0.0029 17 6 0.5066 -5.1598 0.0104 18 6 0.0490 -6.4634 0.0172 19 6 0.9479 -7.5141 0.0175 20 16 0.3588 -9.1746 0.0268 21 7 0.2025 -9.6303 1.6111 22 8 -0.9558 -9.1370 -0.5115 23 8 1.3998 -9.9728 -0.5195 24 6 2.3081 -7.2647 0.0100 25 6 2.7734 -5.9627 0.0028 26 9 4.1022 -5.7190 -0.0040 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.8220 4.0835 -3.0900 33 1 0.7583 -2.5306 -0.8881 34 1 0.7590 -2.5294 0.8920 35 1 3.2909 -3.4086 0.0010 36 1 -0.1968 -4.3402 0.0110 37 1 -1.0125 -6.6620 0.0225 38 1 -0.4726 -10.2791 1.8649 39 1 0.7859 -9.2486 2.2855 40 1 3.0075 -8.0877 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433628782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:19 Heat of formation + Delta-G solvation = -116.429517 kcal Electronic energy + Delta-G solvation = -27176.693002 eV Core-core repulsion = 22840.426395 eV Total energy + Delta-G solvation = -4336.266607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.00786 -39.99513 -39.14534 -37.40987 -36.10838 -35.93041 -35.12773 -33.53262 -32.70419 -31.03863 -30.72333 -28.89682 -27.07066 -25.93779 -23.45647 -23.00327 -22.01259 -19.91328 -19.24279 -18.77259 -18.01078 -17.67889 -17.13292 -17.12499 -16.77167 -16.33922 -16.00414 -15.96380 -15.68315 -15.47891 -15.23365 -14.62070 -14.35782 -14.08192 -13.81584 -13.57883 -13.07913 -12.93354 -12.80642 -12.52602 -12.46583 -12.40928 -12.36382 -12.28123 -12.21765 -11.91918 -11.64828 -11.22306 -11.10367 -10.86449 -10.78437 -10.65237 -10.28583 -9.71027 -9.43629 -9.30951 -8.70816 -8.05814 -7.98666 -6.20246 -4.20779 0.12829 0.56136 0.82273 2.72740 2.80856 2.92525 3.08723 3.20101 3.25836 3.28072 3.45350 3.60731 3.86576 4.14210 4.28486 4.44914 4.58885 4.64394 4.90095 4.98669 5.07580 5.12195 5.15692 5.25360 5.37569 5.53681 5.61186 5.62394 5.69690 5.72014 5.95973 6.21733 6.46971 6.65700 6.68658 6.76613 7.03824 7.26503 7.45577 7.91156 8.30290 8.56708 8.81692 9.38493 10.92837 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.002066 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.076140 B =13549.362466 C =13983.492317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.589 5.589 3 C 0.216 3.784 4 C -0.535 4.535 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.501 3.499 13 O -0.534 6.534 14 C 0.097 3.903 15 N -0.710 5.710 16 C 0.254 3.746 17 C -0.203 4.203 18 C 0.028 3.972 19 C -0.722 4.722 20 S 2.710 3.290 21 N -1.251 6.251 22 O -0.966 6.966 23 O -0.965 6.965 24 C -0.007 4.007 25 C 0.002 3.998 26 F -0.135 7.135 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.421 0.579 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.419 0.581 39 H 0.417 0.583 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 -22.283 12.067 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.321 5.321 3 C 0.095 3.905 4 C -0.573 4.573 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.286 3.714 13 O -0.412 6.412 14 C -0.031 4.031 15 N -0.337 5.337 16 C 0.142 3.858 17 C -0.227 4.227 18 C 0.007 3.993 19 C -0.812 4.812 20 S 2.799 3.201 21 N -0.924 5.924 22 O -0.956 6.956 23 O -0.955 6.955 24 C -0.028 4.028 25 C -0.023 4.023 26 F -0.113 7.113 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.262 0.738 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.249 0.751 39 H 0.244 0.756 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.056 -22.313 11.009 26.836 hybrid contribution 1.110 1.542 1.175 2.233 sum -8.947 -20.771 12.184 25.689 Atomic orbital electron populations 1.21774 0.80415 1.03512 1.00924 1.47797 1.06596 1.06884 1.70822 1.19744 0.92501 0.79542 0.98684 1.21265 1.37598 1.07408 0.91021 0.90748 1.24865 0.95110 0.97335 0.95664 1.69888 1.41051 1.23527 1.18691 0.86835 0.80127 0.79862 0.82737 1.19861 1.20918 1.19079 1.20058 0.88159 0.85072 0.78115 1.90700 1.13637 1.86610 1.50233 1.21356 0.92361 0.85623 1.03721 1.44786 1.10871 1.01090 1.76983 1.18191 0.93254 0.84123 0.90198 1.20699 0.92462 0.98057 1.11450 1.20686 0.99404 0.90882 0.88311 1.30086 1.01024 1.23055 1.27084 1.01209 0.73513 0.73174 0.72177 1.53186 1.50634 1.59603 1.28961 1.93591 1.38352 1.86885 1.76762 1.93608 1.58824 1.66780 1.76250 1.20608 0.94505 0.95566 0.92091 1.17087 0.77498 0.92773 1.14956 1.91511 1.30049 1.94933 1.94847 0.93071 0.89959 0.92003 0.94818 0.94410 0.92389 0.88514 0.88752 0.73849 0.83951 0.83515 0.75101 0.75605 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.24 59.85 0.61 1.60 16 2 N -0.59 -10.82 2.86 -182.95 -0.52 -11.35 16 3 C 0.22 4.93 4.23 -5.19 -0.02 4.91 16 4 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 5 H 0.07 2.26 8.06 -52.48 -0.42 1.83 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 12 C 0.50 9.00 7.74 -10.99 -0.09 8.91 16 13 O -0.53 -11.98 15.25 5.55 0.08 -11.90 16 14 C 0.10 1.17 3.95 -5.20 -0.02 1.15 16 15 N -0.71 -9.23 5.71 -59.73 -0.34 -9.57 16 16 C 0.25 2.89 6.66 -83.67 -0.56 2.33 16 17 C -0.20 -1.82 9.31 -39.39 -0.37 -2.18 16 18 C 0.03 0.23 9.51 -39.60 -0.38 -0.15 16 19 C -0.72 -6.16 5.98 -39.55 -0.24 -6.40 16 20 S 2.71 21.23 6.28 -107.50 -0.67 20.56 16 21 N -1.25 -4.73 9.52 60.35 0.57 -4.16 16 22 O -0.97 -10.24 17.27 -57.17 -0.99 -11.23 16 23 O -0.97 -10.90 17.28 -57.17 -0.99 -11.89 16 24 C -0.01 -0.06 9.49 -39.55 -0.38 -0.44 16 25 C 0.00 0.02 7.31 -39.26 -0.29 -0.27 16 26 F -0.13 -1.78 16.64 2.25 0.04 -1.75 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.12 8.07 -51.93 -0.42 0.71 16 29 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.10 1.01 7.22 -51.93 -0.37 0.63 16 34 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 35 H 0.42 6.33 6.93 -40.82 -0.28 6.04 16 36 H 0.14 0.96 6.74 -52.49 -0.35 0.60 16 37 H 0.15 0.89 7.61 -52.49 -0.40 0.49 16 38 H 0.42 0.91 8.96 -34.47 -0.31 0.60 16 39 H 0.42 0.75 8.96 -34.47 -0.31 0.44 16 40 H 0.15 1.25 7.61 -52.48 -0.40 0.85 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -38.51 357.76 -7.81 -46.31 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.33 Total: 3.16 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.15 Total: -3.63 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.48 Total: -51.21 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.89 Total: -35.02 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 21.23 SS G_CDS: -0.67 Total: 20.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.51 -7.81 -46.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433628782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.118 kcal (2) G-P(sol) polarization free energy of solvation -38.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds