Wall clock time and date at job start Wed Apr 1 2020 04:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99900 * 2 1 4 4 C 1.50700 * 109.47063 * 269.99553 * 3 2 1 5 5 H 1.08003 * 119.99818 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00136 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00143 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99994 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.46782 * 89.99678 * 8 6 4 10 10 H 1.48499 * 109.47509 * 209.99662 * 8 6 4 11 11 H 1.48505 * 109.47206 * 330.00211 * 8 6 4 12 12 C 1.34772 * 119.99726 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99792 * 180.02562 * 12 2 1 14 14 C 1.50701 * 120.00268 * 359.97438 * 12 2 1 15 15 N 1.46493 * 109.47159 * 179.97438 * 14 12 2 16 16 C 1.39845 * 119.99915 * 179.97438 * 15 14 12 17 17 C 1.38829 * 120.07970 * 359.72638 * 16 15 14 18 18 C 1.38160 * 119.94806 * 180.25473 * 17 16 15 19 19 C 1.38272 * 120.11079 * 0.04523 * 18 17 16 20 20 S 1.76199 * 119.91621 * 179.97438 * 19 18 17 21 21 N 1.65594 * 107.21796 * 269.97589 * 20 19 18 22 22 O 1.42107 * 106.40312 * 23.51710 * 20 19 18 23 23 O 1.42100 * 106.40297 * 156.43403 * 20 19 18 24 24 C 1.38285 * 120.16146 * 359.95082 * 19 18 17 25 25 C 1.38271 * 120.05284 * 0.03049 * 24 19 18 26 26 F 1.35095 * 120.05991 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47495 * 270.00521 * 1 2 3 28 28 H 1.09002 * 109.46972 * 30.00545 * 1 2 3 29 29 H 1.09003 * 109.47000 * 149.99705 * 1 2 3 30 30 H 1.08995 * 109.47380 * 29.99761 * 3 2 1 31 31 H 1.09003 * 109.47159 * 149.99777 * 3 2 1 32 32 H 0.97004 * 120.00099 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46875 * 59.99885 * 14 12 2 34 34 H 1.09005 * 109.47243 * 300.00149 * 14 12 2 35 35 H 0.96994 * 120.00318 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.02809 * 0.25021 * 17 16 15 37 37 H 1.07998 * 119.93966 * 180.02562 * 18 17 16 38 38 H 0.97002 * 120.00135 * 150.00077 * 21 20 19 39 39 H 0.97004 * 120.00228 * 329.99849 * 21 20 19 40 40 H 1.08004 * 119.97253 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7329 3.9292 -0.2530 9 1 5.1065 3.5081 0.1229 10 1 3.7478 5.3560 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3373 -3.5858 0.0014 16 6 1.8711 -4.9042 0.0029 17 6 0.5066 -5.1598 0.0104 18 6 0.0490 -6.4634 0.0172 19 6 0.9479 -7.5141 0.0175 20 16 0.3588 -9.1746 0.0268 21 7 0.2025 -9.6303 1.6111 22 8 -0.9558 -9.1370 -0.5115 23 8 1.3998 -9.9728 -0.5195 24 6 2.3081 -7.2647 0.0100 25 6 2.7734 -5.9627 0.0028 26 9 4.1022 -5.7190 -0.0040 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.8220 4.0835 -3.0900 33 1 0.7583 -2.5306 -0.8881 34 1 0.7590 -2.5294 0.8920 35 1 3.2909 -3.4086 0.0010 36 1 -0.1968 -4.3402 0.0110 37 1 -1.0125 -6.6620 0.0225 38 1 -0.4726 -10.2791 1.8649 39 1 0.7859 -9.2486 2.2855 40 1 3.0075 -8.0877 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433628782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:18 Heat of formation + Delta-G solvation = -149.941143 kcal Electronic energy + Delta-G solvation = -27178.146175 eV Core-core repulsion = 22840.426395 eV Total energy + Delta-G solvation = -4337.719780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.92857 -41.12127 -40.16164 -38.16706 -37.06086 -36.84212 -36.44753 -34.74902 -33.94721 -31.81839 -31.74853 -30.42078 -28.10739 -27.23567 -24.66270 -23.94398 -23.24158 -20.61965 -20.35038 -19.57976 -19.19648 -18.95546 -18.25579 -18.03167 -17.48502 -17.30750 -17.12657 -17.02369 -16.75123 -16.64120 -16.15464 -15.93155 -15.48875 -15.10214 -14.79471 -14.55843 -14.53739 -14.12825 -13.90632 -13.72776 -13.69459 -13.46378 -13.23709 -13.15439 -13.12460 -13.06024 -12.82607 -12.63844 -12.47010 -12.07191 -11.92411 -11.78709 -11.66495 -11.22659 -10.92414 -10.86486 -10.03984 -9.50691 -8.89418 -8.37445 -6.43277 -0.51611 -0.17751 0.08343 1.30739 1.34925 1.42870 1.57197 1.77428 2.15086 2.27826 2.38413 2.43446 2.84027 2.97268 3.09138 3.43764 3.45095 3.75950 3.96967 4.11102 4.20297 4.22779 4.40369 4.44640 4.53444 4.65843 4.78014 4.86350 4.90772 4.98739 4.99535 5.02070 5.36470 5.41071 5.45397 5.53605 5.88644 6.17431 6.22804 6.44521 6.55983 6.59168 7.12739 7.25670 8.79310 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.002066 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.076140 B =13549.362466 C =13983.492317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.222 3.778 4 C -0.537 4.537 5 H 0.029 0.971 6 C 0.009 3.991 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.234 1.234 12 C 0.489 3.511 13 O -0.592 6.592 14 C 0.111 3.889 15 N -0.727 5.727 16 C 0.239 3.761 17 C -0.196 4.196 18 C 0.030 3.970 19 C -0.715 4.715 20 S 2.738 3.262 21 N -1.233 6.233 22 O -0.990 6.990 23 O -1.001 7.001 24 C -0.009 4.009 25 C -0.027 4.027 26 F -0.152 7.152 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.268 0.732 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.407 0.593 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.430 0.570 39 H 0.429 0.571 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 -23.210 14.567 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.329 5.329 3 C 0.100 3.900 4 C -0.576 4.576 5 H 0.047 0.953 6 C -0.189 4.189 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.277 3.723 13 O -0.474 6.474 14 C -0.015 4.015 15 N -0.354 5.354 16 C 0.130 3.870 17 C -0.219 4.219 18 C 0.010 3.990 19 C -0.806 4.806 20 S 2.826 3.174 21 N -0.912 5.912 22 O -0.980 6.980 23 O -0.991 6.991 24 C -0.030 4.030 25 C -0.051 4.051 26 F -0.132 7.132 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.244 0.756 36 H 0.190 0.810 37 H 0.192 0.808 38 H 0.263 0.737 39 H 0.259 0.741 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.971 -23.284 13.534 29.893 hybrid contribution 1.918 1.680 0.350 2.574 sum -11.053 -21.604 13.884 27.958 Atomic orbital electron populations 1.22147 0.76753 1.04679 1.03718 1.47885 1.08895 1.05546 1.70591 1.19386 0.92901 0.82446 0.95301 1.21545 1.36895 1.06719 0.92433 0.95284 1.25885 0.95347 0.99089 0.98612 1.70050 1.42625 1.24471 1.21364 0.85705 0.79500 0.77735 0.79920 1.20491 1.20153 1.15670 1.21109 0.87886 0.86815 0.76465 1.90668 1.16458 1.87641 1.52596 1.21424 0.91535 0.81828 1.06706 1.44818 1.10251 1.01915 1.78400 1.18402 0.94258 0.83192 0.91173 1.21059 0.91597 0.99327 1.09955 1.21078 1.00658 0.90356 0.86927 1.30207 1.00552 1.23653 1.26175 1.00219 0.72206 0.72373 0.72605 1.52757 1.51173 1.59623 1.27623 1.93558 1.39319 1.87081 1.78037 1.93574 1.59981 1.67722 1.77778 1.20756 0.95380 0.95106 0.91716 1.17456 0.77019 0.93913 1.16743 1.91459 1.31405 1.95119 1.95169 0.89298 0.91397 0.88404 0.92593 0.96309 0.92267 0.86213 0.84432 0.75564 0.80990 0.80799 0.73720 0.74111 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 10.24 127.77 1.31 2.81 16 2 N -0.60 -21.20 2.86 -851.12 -2.43 -23.64 16 3 C 0.22 10.09 4.23 85.63 0.36 10.45 16 4 C -0.54 -30.46 9.94 25.60 0.25 -30.21 16 5 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 6 C 0.01 0.51 5.47 84.65 0.46 0.97 16 7 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 8 Si 0.95 43.19 27.47 68.60 1.88 45.08 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.23 -9.34 6.54 99.48 0.65 -8.69 16 12 C 0.49 17.26 7.74 87.66 0.68 17.94 16 13 O -0.59 -27.45 15.25 -3.04 -0.05 -27.50 16 14 C 0.11 2.39 3.95 85.63 0.34 2.73 16 15 N -0.73 -18.27 5.71 -342.90 -1.96 -20.23 16 16 C 0.24 5.10 6.66 38.21 0.25 5.35 16 17 C -0.20 -2.82 9.31 22.39 0.21 -2.61 16 18 C 0.03 0.38 9.51 22.26 0.21 0.60 16 19 C -0.72 -10.65 5.98 22.29 0.13 -10.52 16 20 S 2.74 37.44 6.28 -56.49 -0.35 37.08 16 21 N -1.23 -6.06 9.52 37.02 0.35 -5.71 16 22 O -0.99 -18.69 17.27 -128.00 -2.21 -20.90 16 23 O -1.00 -21.53 17.28 -128.00 -2.21 -23.74 16 24 C -0.01 -0.16 9.49 22.29 0.21 0.05 16 25 C -0.03 -0.63 7.31 22.48 0.16 -0.46 16 26 F -0.15 -4.24 16.64 44.97 0.75 -3.50 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.71 8.07 -2.39 -0.02 1.69 16 29 H 0.10 1.43 6.44 -2.39 -0.02 1.41 16 30 H 0.06 2.29 7.13 -2.39 -0.02 2.28 16 31 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.12 2.03 7.22 -2.38 -0.02 2.01 16 34 H 0.14 1.77 7.91 -2.38 -0.02 1.75 16 35 H 0.41 12.68 6.93 -92.71 -0.64 12.04 16 36 H 0.17 1.37 6.74 -2.91 -0.02 1.35 16 37 H 0.17 1.31 7.61 -2.91 -0.02 1.28 16 38 H 0.43 0.66 8.96 -96.75 -0.87 -0.21 16 39 H 0.43 0.34 8.96 -96.74 -0.87 -0.53 16 40 H 0.16 2.58 7.61 -2.91 -0.02 2.55 16 Total: -1.00 -89.79 357.76 -2.63 -92.42 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -1.29 Total: 12.15 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.59 Total: -2.89 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -3.74 Total: -108.21 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -4.47 Total: -72.14 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.75 Total: -3.50 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -0.35 Total: 37.08 kcal Total: -89.79 -2.63 -92.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433628782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.517 kcal (2) G-P(sol) polarization free energy of solvation -89.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds