Wall clock time and date at job start Wed Apr 1 2020 03:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47475 * 2 1 4 4 C 1.50704 * 109.47170 * 239.99755 * 2 1 3 5 5 H 1.07999 * 120.00159 * 275.17592 * 4 2 1 6 6 C 1.37878 * 120.00000 * 95.45078 * 4 2 1 7 7 N 1.31503 * 120.00291 * 183.58985 * 6 4 2 8 8 Si 1.86802 * 119.99716 * 3.59059 * 6 4 2 9 9 H 1.48503 * 109.47337 * 85.15637 * 8 6 4 10 10 H 1.48500 * 109.47160 * 205.15214 * 8 6 4 11 11 H 1.48495 * 109.47327 * 325.15315 * 8 6 4 12 12 N 1.46502 * 109.47402 * 119.99868 * 2 1 3 13 13 S 1.65596 * 119.99960 * 265.00263 * 12 2 1 14 14 O 1.42099 * 104.27727 * 181.07051 * 13 12 2 15 15 O 1.42103 * 104.27603 * 308.92427 * 13 12 2 16 16 C 1.81393 * 104.45177 * 64.99713 * 13 12 2 17 17 C 1.52999 * 109.47407 * 180.02562 * 16 13 12 18 18 H 1.09007 * 109.48118 * 304.97489 * 17 16 13 19 19 C 1.53088 * 109.48324 * 184.94310 * 17 16 13 20 20 C 1.53179 * 109.16322 * 297.62479 * 19 17 16 21 21 C 1.53184 * 109.03612 * 303.01870 * 20 19 17 22 22 C 1.53094 * 109.15964 * 56.97705 * 21 20 19 23 23 H 1.09002 * 109.47663 * 62.37858 * 22 21 20 24 24 C 1.53001 * 109.48758 * 182.40381 * 22 21 20 25 25 F 1.39895 * 109.46968 * 179.97438 * 24 22 21 26 26 F 1.39906 * 109.46952 * 299.94947 * 24 22 21 27 27 F 1.39892 * 109.47221 * 59.94666 * 24 22 21 28 28 O 1.42901 * 109.42029 * 302.39279 * 22 21 20 29 29 H 1.09001 * 109.47587 * 64.24365 * 1 2 3 30 30 H 1.09002 * 109.47101 * 184.24482 * 1 2 3 31 31 H 1.08999 * 109.47130 * 304.24341 * 1 2 3 32 32 H 0.97005 * 120.00472 * 180.02562 * 7 6 4 33 33 H 0.97002 * 119.99907 * 85.00119 * 12 2 1 34 34 H 1.09007 * 109.47341 * 300.00124 * 16 13 12 35 35 H 1.09003 * 109.47528 * 60.00119 * 16 13 12 36 36 H 1.09003 * 109.52282 * 57.52990 * 19 17 16 37 37 H 1.09007 * 109.52450 * 177.71895 * 19 17 16 38 38 H 1.09001 * 109.54428 * 183.15469 * 20 19 17 39 39 H 1.08998 * 109.61783 * 62.92732 * 20 19 17 40 40 H 1.09002 * 109.51675 * 297.07886 * 21 20 19 41 41 H 1.08993 * 109.52138 * 176.88535 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1327 -1.7858 -1.2300 6 6 2.3690 0.0128 -2.3550 7 7 2.7399 -0.6112 -3.4515 8 14 2.2984 1.8792 -2.3208 9 1 3.5718 2.4129 -1.7741 10 1 2.0982 2.3923 -3.6998 11 1 1.1691 2.3162 -1.4613 12 7 2.0183 -0.6906 1.1962 13 16 2.4121 0.1772 2.5504 14 8 2.8606 -0.8028 3.4765 15 8 3.2874 1.1907 2.0750 16 6 0.8408 0.8989 3.0984 17 6 1.0753 1.7351 4.3581 18 1 1.5591 1.1207 5.1174 19 6 -0.2669 2.2429 4.8911 20 6 -0.9124 3.1537 3.8422 21 6 0.0520 4.2971 3.5118 22 6 1.3820 3.7098 3.0322 23 1 1.2188 3.1400 2.1174 24 6 2.3712 4.8442 2.7571 25 9 3.5865 4.3072 2.3194 26 9 1.8513 5.6869 1.7687 27 9 2.5799 5.5758 3.9311 28 8 1.9129 2.8489 4.0416 29 1 -0.3634 0.4466 -0.9255 30 1 -0.3633 -1.0249 0.0761 31 1 -0.3633 0.5783 0.8495 32 1 2.9772 -0.1023 -4.2425 33 1 2.1110 -1.6562 1.1949 34 1 0.4386 1.5353 2.3100 35 1 0.1315 0.1010 3.3185 36 1 -0.9232 1.3960 5.0915 37 1 -0.1046 2.8048 5.8110 38 1 -1.8419 3.5634 4.2374 39 1 -1.1215 2.5806 2.9389 40 1 0.2208 4.9003 4.4039 41 1 -0.3762 4.9191 2.7259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434551784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:23 Heat of formation + Delta-G solvation = -303.211467 kcal Electronic energy + Delta-G solvation = -31468.034690 eV Core-core repulsion = 26672.979424 eV Total energy + Delta-G solvation = -4795.055267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.19681 -48.73410 -48.65056 -41.14495 -38.16546 -37.35133 -36.90736 -34.95306 -34.27121 -34.13718 -30.76127 -30.39343 -27.52407 -27.15059 -24.63986 -23.89389 -22.58404 -21.11618 -20.37202 -19.61639 -19.55227 -19.32801 -19.19123 -18.09966 -17.90624 -17.19117 -17.06166 -16.69489 -16.39629 -15.94807 -15.51500 -15.50809 -15.33523 -15.11980 -15.03841 -14.82321 -14.80208 -14.62841 -14.56455 -14.48906 -13.93006 -13.75228 -13.60893 -13.38603 -13.23603 -13.12148 -13.03130 -12.91607 -12.78047 -12.61174 -12.24833 -12.16993 -11.87960 -11.82166 -11.73108 -11.40414 -11.20626 -10.86483 -10.75628 -10.11398 -8.35562 -6.40029 -0.69306 1.26956 1.35801 1.38700 1.39634 1.86801 2.18787 2.28635 2.64789 2.81306 2.88020 3.03905 3.23149 3.27836 3.37351 3.55285 3.66433 3.81577 3.85493 4.04853 4.13026 4.23669 4.31649 4.52156 4.63756 4.70439 4.76066 4.77853 4.91572 4.94636 5.06096 5.12329 5.33339 5.38945 5.52091 5.59921 5.64785 6.27362 6.31414 6.67576 7.25321 8.80404 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.005617 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.104592 B = 4983.668954 C = 6029.069805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.233 3.767 3 H 0.039 0.961 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.937 5.937 8 Si 0.908 3.092 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.222 1.222 12 N -1.104 6.104 13 S 2.591 3.409 14 O -0.997 6.997 15 O -0.988 6.988 16 C -0.660 4.660 17 C 0.094 3.906 18 H 0.137 0.863 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.152 4.152 22 C 0.035 3.965 23 H 0.100 0.900 24 C 0.455 3.545 25 F -0.186 7.186 26 F -0.174 7.174 27 F -0.176 7.176 28 O -0.375 6.375 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.268 0.732 33 H 0.414 0.586 34 H 0.151 0.849 35 H 0.195 0.805 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 10.470 18.451 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.576 5.576 8 Si 0.732 3.268 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.144 1.144 12 N -0.863 5.863 13 S 2.689 3.311 14 O -0.987 6.987 15 O -0.978 6.978 16 C -0.791 4.791 17 C 0.035 3.965 18 H 0.155 0.845 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.189 4.189 22 C -0.025 4.025 23 H 0.118 0.882 24 C 0.400 3.600 25 F -0.167 7.167 26 F -0.156 7.156 27 F -0.157 7.157 28 O -0.295 6.295 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.248 0.752 34 H 0.169 0.831 35 H 0.213 0.787 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.247 10.821 18.713 24.845 hybrid contribution 0.367 0.257 -1.172 1.254 sum -11.880 11.078 17.541 23.907 Atomic orbital electron populations 1.22443 0.95219 1.02737 1.01563 1.18904 0.92969 0.92236 0.83197 0.94367 1.21307 1.43486 0.94664 0.96368 0.93371 1.25741 0.94061 1.02685 0.95145 1.69994 1.46671 1.37809 1.03164 0.86332 0.80644 0.81309 0.78551 1.20900 1.20339 1.14445 1.55576 1.84238 1.19598 1.26862 1.05192 0.78359 0.74224 0.73367 1.93513 1.81153 1.59663 1.64406 1.93585 1.63079 1.61608 1.79517 1.31433 1.23440 1.14373 1.09899 1.22434 0.95311 0.85352 0.93364 0.84520 1.22180 0.93725 1.01839 0.99529 1.21720 0.98646 0.95487 1.00210 1.22343 0.91866 1.00450 1.04264 1.23364 0.93246 0.90273 0.95586 0.88245 1.20468 0.81394 0.83743 0.74356 1.93269 1.47822 1.85901 1.89712 1.93189 1.86537 1.73062 1.62778 1.93166 1.95371 1.79308 1.47864 1.88058 1.46633 1.38301 1.56484 0.92636 0.91593 0.91046 0.92284 0.75206 0.83078 0.78747 0.86806 0.88917 0.87556 0.90218 0.88790 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.43 71.98 0.68 -4.38 16 2 C 0.23 9.65 2.45 44.24 0.11 9.76 16 3 H 0.04 1.66 4.66 -2.39 -0.01 1.65 16 4 C -0.52 -27.67 9.11 25.60 0.23 -27.44 16 5 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 6 C 0.02 1.31 5.47 84.66 0.46 1.77 16 7 N -0.94 -56.81 13.96 21.45 0.30 -56.51 16 8 Si 0.91 42.66 26.97 68.60 1.85 44.51 16 9 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.22 -8.79 6.85 99.48 0.68 -8.11 16 12 N -1.10 -40.36 5.35 -172.53 -0.92 -41.28 16 13 S 2.59 86.32 5.29 -56.49 -0.30 86.02 16 14 O -1.00 -36.85 18.08 -127.65 -2.31 -39.16 16 15 O -0.99 -42.12 16.91 -125.37 -2.12 -44.24 16 16 C -0.66 -12.57 4.11 71.98 0.30 -12.27 16 17 C 0.09 1.64 3.29 30.62 0.10 1.74 16 18 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 19 C -0.13 -1.25 5.64 30.68 0.17 -1.08 16 20 C -0.12 -1.13 5.72 30.72 0.18 -0.95 16 21 C -0.15 -2.15 5.17 30.69 0.16 -1.99 16 22 C 0.03 0.81 2.29 30.63 0.07 0.88 16 23 H 0.10 2.38 6.23 -2.39 -0.01 2.36 16 24 C 0.45 12.75 2.85 71.98 0.21 12.96 16 25 F -0.19 -6.74 17.26 44.97 0.78 -5.96 16 26 F -0.17 -4.56 16.85 44.97 0.76 -3.80 16 27 F -0.18 -4.62 16.70 44.97 0.75 -3.86 16 28 O -0.38 -9.34 9.46 -148.04 -1.40 -10.74 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.54 5.87 -2.39 -0.01 1.52 16 32 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 33 H 0.41 14.61 8.79 -96.74 -0.85 13.76 16 34 H 0.15 2.62 3.54 -2.39 -0.01 2.61 16 35 H 0.20 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.68 6.74 -2.39 -0.02 0.66 16 40 H 0.09 1.24 7.74 -2.39 -0.02 1.22 16 41 H 0.10 1.22 7.88 -2.39 -0.02 1.20 16 Total: -1.00 -77.85 348.22 0.26 -77.59 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.21 Total: 18.44 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 2.66 Total: -21.01 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -0.62 Total: -97.79 kcal Atomic # 8 Polarization: -88.31 SS G_CDS: -5.83 Total: -94.14 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 2.28 Total: -13.63 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.85 Total: 44.51 kcal Atomic # 16 Polarization: 86.32 SS G_CDS: -0.30 Total: 86.02 kcal Total: -77.85 0.26 -77.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434551784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.621 kcal (2) G-P(sol) polarization free energy of solvation -77.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -303.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds