Wall clock time and date at job start Wed Apr 1 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34765 * 116.99932 * 2 1 4 4 O 1.21527 * 120.00355 * 359.97438 * 3 2 1 5 5 C 1.47240 * 119.99850 * 179.97438 * 3 2 1 6 6 C 1.47056 * 127.19808 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94641 * 180.02562 * 6 5 3 8 8 O 1.34220 * 109.14404 * 0.22740 * 7 6 5 9 9 C 1.33623 * 110.92587 * 359.61341 * 8 7 6 10 10 S 1.76199 * 125.80919 * 180.15748 * 9 8 7 11 11 O 1.42100 * 106.40180 * 88.46238 * 10 9 8 12 12 O 1.42102 * 106.40015 * 221.38454 * 10 9 8 13 13 N 1.65600 * 107.21932 * 334.92190 * 10 9 8 14 14 C 1.46505 * 119.99853 * 80.13946 * 13 10 9 15 15 C 1.50703 * 109.46531 * 95.00244 * 14 13 10 16 16 H 1.07994 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99675 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00031 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99937 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47279 * 89.99773 * 19 17 15 21 21 H 1.48502 * 109.46906 * 209.99972 * 19 17 15 22 22 H 1.48502 * 109.47186 * 329.99703 * 19 17 15 23 23 C 1.46500 * 119.99904 * 260.14380 * 13 10 9 24 24 C 1.53007 * 109.46826 * 111.36987 * 23 13 10 25 25 C 1.53005 * 109.46764 * 173.69152 * 24 23 13 26 26 C 1.52999 * 109.46835 * 293.68550 * 24 23 13 27 27 H 1.09001 * 109.47054 * 299.99888 * 1 2 3 28 28 H 1.08997 * 109.47443 * 60.00020 * 1 2 3 29 29 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.08001 * 127.02889 * 0.02562 * 6 5 3 31 31 H 1.08000 * 125.42815 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47214 * 215.00168 * 14 13 10 33 33 H 1.08999 * 109.47278 * 335.00316 * 14 13 10 34 34 H 0.97001 * 119.99983 * 179.97438 * 18 17 15 35 35 H 1.08993 * 109.46798 * 231.36310 * 23 13 10 36 36 H 1.08995 * 109.47378 * 351.36976 * 23 13 10 37 37 H 1.08990 * 109.47327 * 53.69264 * 24 23 13 38 38 H 1.09002 * 109.46836 * 59.99656 * 25 24 23 39 39 H 1.08993 * 109.46916 * 179.97438 * 25 24 23 40 40 H 1.08999 * 109.46961 * 299.99801 * 25 24 23 41 41 H 1.09000 * 109.46528 * 68.49106 * 26 24 23 42 42 H 1.08996 * 109.47140 * 188.48258 * 26 24 23 43 43 H 1.08993 * 109.47568 * 308.49063 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4833 0.1546 0.0017 7 6 5.7065 0.7056 0.0024 8 8 5.5870 2.0424 0.0069 9 6 4.3014 2.4067 0.0008 10 16 3.6991 4.0626 -0.0003 11 8 3.6032 4.4538 -1.3630 12 8 2.5961 4.0889 0.8954 13 7 4.8744 5.0122 0.6773 14 6 6.0235 5.4396 -0.1247 15 6 5.7547 6.8068 -0.6987 16 1 4.8212 7.3072 -0.4876 17 6 6.7006 7.4190 -1.4934 18 7 6.4659 8.6120 -1.9947 19 14 8.3150 6.5533 -1.8591 20 1 8.1705 5.7358 -3.0903 21 1 9.3845 7.5641 -2.0587 22 1 8.6735 5.6720 -0.7189 23 6 4.7651 5.4248 2.0787 24 6 5.8527 4.7305 2.9011 25 6 5.8398 5.2785 4.3296 26 6 5.5863 3.2241 2.9303 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.2445 -0.8987 0.0019 31 1 6.6387 0.1604 0.0037 32 1 6.9121 5.4783 0.5053 33 1 6.1842 4.7300 -0.9363 34 1 7.1315 9.0428 -2.5535 35 1 4.8899 6.5052 2.1501 36 1 3.7845 5.1460 2.4642 37 1 6.8262 4.9186 2.4485 38 1 4.8662 5.0903 4.7821 39 1 6.6142 4.7836 4.9155 40 1 6.0295 6.3516 4.3087 41 1 5.7435 2.8081 1.9352 42 1 6.2681 2.7482 3.6350 43 1 4.5575 3.0430 3.2414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474931774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:00 Heat of formation + Delta-G solvation = -128.609834 kcal Electronic energy + Delta-G solvation = -30369.942403 eV Core-core repulsion = 26124.315172 eV Total energy + Delta-G solvation = -4245.627231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.82959 -40.33538 -37.34080 -36.83837 -36.51001 -35.35542 -33.85331 -33.36232 -32.14905 -30.40453 -28.13926 -28.09505 -27.00499 -25.18425 -24.30345 -22.28492 -22.18298 -21.09353 -19.72961 -19.22634 -18.09569 -17.44804 -17.06321 -16.90103 -16.85871 -16.44211 -16.27779 -15.52573 -15.41980 -14.63006 -14.26911 -14.18903 -13.91681 -13.76349 -13.45067 -13.39401 -13.09035 -12.69503 -12.46987 -12.27491 -12.24651 -12.06413 -11.82468 -11.62011 -11.58828 -11.37644 -11.31931 -11.23060 -10.97537 -10.78793 -10.74121 -10.72265 -10.48294 -10.23939 -10.19639 -10.11108 -9.54077 -9.38553 -8.58605 -8.19485 -6.07175 -4.06478 0.47305 0.64349 1.67033 2.32782 2.57742 2.73213 3.27093 3.32147 3.34389 3.53900 4.01909 4.22307 4.38555 4.51321 4.88291 4.92791 4.98001 5.02694 5.03041 5.08595 5.16835 5.24578 5.27751 5.33636 5.36011 5.61616 5.76543 5.87777 5.88644 5.95379 5.98466 6.08050 6.18457 6.22422 6.37808 6.47970 6.52362 6.59967 6.71263 7.02792 7.28621 7.50007 7.56044 8.48992 8.98879 9.51145 11.06266 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004643 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.830000 B = 6028.925244 C = 6469.211662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.517 3.483 4 O -0.466 6.466 5 C -0.130 4.130 6 C -0.183 4.183 7 C -0.008 4.008 8 O -0.109 6.109 9 C -0.463 4.463 10 S 2.688 3.312 11 O -0.910 6.910 12 O -0.920 6.920 13 N -0.962 5.962 14 C 0.224 3.776 15 C -0.530 4.530 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.866 3.134 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.121 3.879 24 C -0.116 4.116 25 C -0.143 4.143 26 C -0.160 4.160 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.171 0.829 31 H 0.219 0.781 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -19.334 9.224 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.360 3.640 4 O -0.352 6.352 5 C -0.134 4.134 6 C -0.202 4.202 7 C -0.077 4.077 8 O -0.001 6.001 9 C -0.590 4.590 10 S 2.765 3.235 11 O -0.900 6.900 12 O -0.909 6.909 13 N -0.803 5.803 14 C 0.101 3.899 15 C -0.569 4.569 16 H 0.100 0.900 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.693 3.307 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.004 4.004 24 C -0.137 4.137 25 C -0.201 4.201 26 C -0.217 4.217 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.189 0.811 31 H 0.236 0.764 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.414 -18.534 8.776 20.789 hybrid contribution 1.134 -1.305 -0.279 1.752 sum -2.280 -19.839 8.497 21.702 Atomic orbital electron populations 1.23372 0.75399 1.03861 1.03281 1.86512 1.23913 1.31669 1.84539 1.20037 0.87363 0.82344 0.74300 1.91086 1.65911 1.35007 1.43181 1.20388 0.91233 0.93314 1.08452 1.23040 0.90661 0.99717 1.06794 1.24494 1.00611 0.81052 1.01513 1.84053 1.24054 1.24017 1.67966 1.37603 0.86592 1.23771 1.11049 1.03215 0.73427 0.71764 0.75091 1.93688 1.84957 1.77929 1.33441 1.93628 1.46980 1.84876 1.65461 1.57193 1.41346 1.61377 1.20355 1.19553 0.83998 0.96558 0.89788 1.21329 1.05071 0.99966 1.30503 0.90049 1.24830 0.98110 0.94721 0.95085 1.69885 1.35265 1.14350 1.33606 0.87008 0.84067 0.80012 0.79660 1.19790 1.20881 1.18749 1.21489 0.98871 1.01024 0.79044 1.21533 1.01068 0.95029 0.96031 1.21760 1.01497 1.01260 0.95556 1.22065 1.01488 0.96299 1.01877 0.91331 0.91405 0.87769 0.81118 0.76422 0.94082 0.95436 0.92495 0.89153 0.89382 0.89964 0.92730 0.92895 0.92174 0.92630 0.92644 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.50 10.48 -40.67 -0.43 -4.92 16 3 C 0.52 8.52 7.95 34.39 0.27 8.79 16 4 O -0.47 -9.12 13.38 -27.04 -0.36 -9.48 16 5 C -0.13 -2.06 6.31 -103.29 -0.65 -2.71 16 6 C -0.18 -2.08 11.05 -37.44 -0.41 -2.49 16 7 C -0.01 -0.08 12.03 29.30 0.35 0.27 16 8 O -0.11 -1.64 8.48 7.71 0.07 -1.57 16 9 C -0.46 -8.15 6.34 30.10 0.19 -7.96 16 10 S 2.69 57.19 5.07 -107.50 -0.55 56.64 16 11 O -0.91 -22.95 17.36 -57.17 -0.99 -23.94 16 12 O -0.92 -19.88 13.68 -66.69 -0.91 -20.79 16 13 N -0.96 -19.70 2.51 -115.66 -0.29 -19.99 16 14 C 0.22 5.17 4.08 -5.19 -0.02 5.15 16 15 C -0.53 -14.83 9.94 -34.44 -0.34 -15.17 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 19 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 23 C 0.12 2.08 5.23 -4.04 -0.02 2.06 16 24 C -0.12 -1.66 2.97 -90.61 -0.27 -1.93 16 25 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 26 C -0.16 -2.12 9.01 37.16 0.33 -1.79 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.22 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.04 0.88 5.87 -51.93 -0.30 0.58 16 33 H 0.03 0.64 7.30 -51.93 -0.38 0.26 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.43 6.61 -51.93 -0.34 1.09 16 37 H 0.08 1.24 6.86 -51.93 -0.36 0.88 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.77 4.47 -51.93 -0.23 0.54 16 42 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -36.25 370.06 -6.89 -43.15 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.85 Total: -0.60 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 0.74 Total: -13.66 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.48 Total: -46.38 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -2.63 Total: -60.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 57.19 SS G_CDS: -0.55 Total: 56.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.25 -6.89 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474931774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.464 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds