Wall clock time and date at job start Wed Apr 1 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34765 * 116.99932 * 2 1 4 4 O 1.21527 * 120.00355 * 359.97438 * 3 2 1 5 5 C 1.47240 * 119.99850 * 179.97438 * 3 2 1 6 6 C 1.47056 * 127.19808 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94641 * 180.02562 * 6 5 3 8 8 O 1.34220 * 109.14404 * 0.22740 * 7 6 5 9 9 C 1.33623 * 110.92587 * 359.61341 * 8 7 6 10 10 S 1.76199 * 125.80919 * 180.15748 * 9 8 7 11 11 O 1.42100 * 106.40180 * 88.46238 * 10 9 8 12 12 O 1.42102 * 106.40015 * 221.38454 * 10 9 8 13 13 N 1.65600 * 107.21932 * 334.92190 * 10 9 8 14 14 C 1.46505 * 119.99853 * 80.13946 * 13 10 9 15 15 C 1.50703 * 109.46531 * 95.00244 * 14 13 10 16 16 H 1.07994 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99675 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00031 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99937 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47279 * 89.99773 * 19 17 15 21 21 H 1.48502 * 109.46906 * 209.99972 * 19 17 15 22 22 H 1.48502 * 109.47186 * 329.99703 * 19 17 15 23 23 C 1.46500 * 119.99904 * 260.14380 * 13 10 9 24 24 C 1.53007 * 109.46826 * 111.36987 * 23 13 10 25 25 C 1.53005 * 109.46764 * 173.69152 * 24 23 13 26 26 C 1.52999 * 109.46835 * 293.68550 * 24 23 13 27 27 H 1.09001 * 109.47054 * 299.99888 * 1 2 3 28 28 H 1.08997 * 109.47443 * 60.00020 * 1 2 3 29 29 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.08001 * 127.02889 * 0.02562 * 6 5 3 31 31 H 1.08000 * 125.42815 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47214 * 215.00168 * 14 13 10 33 33 H 1.08999 * 109.47278 * 335.00316 * 14 13 10 34 34 H 0.97001 * 119.99983 * 179.97438 * 18 17 15 35 35 H 1.08993 * 109.46798 * 231.36310 * 23 13 10 36 36 H 1.08995 * 109.47378 * 351.36976 * 23 13 10 37 37 H 1.08990 * 109.47327 * 53.69264 * 24 23 13 38 38 H 1.09002 * 109.46836 * 59.99656 * 25 24 23 39 39 H 1.08993 * 109.46916 * 179.97438 * 25 24 23 40 40 H 1.08999 * 109.46961 * 299.99801 * 25 24 23 41 41 H 1.09000 * 109.46528 * 68.49106 * 26 24 23 42 42 H 1.08996 * 109.47140 * 188.48258 * 26 24 23 43 43 H 1.08993 * 109.47568 * 308.49063 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5341 1.2778 0.0006 6 6 4.4833 0.1546 0.0017 7 6 5.7065 0.7056 0.0024 8 8 5.5870 2.0424 0.0069 9 6 4.3014 2.4067 0.0008 10 16 3.6991 4.0626 -0.0003 11 8 3.6032 4.4538 -1.3630 12 8 2.5961 4.0889 0.8954 13 7 4.8744 5.0122 0.6773 14 6 6.0235 5.4396 -0.1247 15 6 5.7547 6.8068 -0.6987 16 1 4.8212 7.3072 -0.4876 17 6 6.7006 7.4190 -1.4934 18 7 6.4659 8.6120 -1.9947 19 14 8.3150 6.5533 -1.8591 20 1 8.1705 5.7358 -3.0903 21 1 9.3845 7.5641 -2.0587 22 1 8.6735 5.6720 -0.7189 23 6 4.7651 5.4248 2.0787 24 6 5.8527 4.7305 2.9011 25 6 5.8398 5.2785 4.3296 26 6 5.5863 3.2241 2.9303 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 4.2445 -0.8987 0.0019 31 1 6.6387 0.1604 0.0037 32 1 6.9121 5.4783 0.5053 33 1 6.1842 4.7300 -0.9363 34 1 7.1315 9.0428 -2.5535 35 1 4.8899 6.5052 2.1501 36 1 3.7845 5.1460 2.4642 37 1 6.8262 4.9186 2.4485 38 1 4.8662 5.0903 4.7821 39 1 6.6142 4.7836 4.9155 40 1 6.0295 6.3516 4.3087 41 1 5.7435 2.8081 1.9352 42 1 6.2681 2.7482 3.6350 43 1 4.5575 3.0430 3.2414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474931774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:59 Heat of formation + Delta-G solvation = -155.284354 kcal Electronic energy + Delta-G solvation = -30371.099097 eV Core-core repulsion = 26124.315172 eV Total energy + Delta-G solvation = -4246.783925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.89160 -41.51128 -38.77335 -38.43898 -37.78535 -37.07395 -35.43163 -34.47397 -34.06577 -31.44418 -29.97107 -29.02803 -27.98927 -26.65958 -25.45299 -24.08881 -23.27443 -22.27681 -20.94974 -20.40517 -19.62441 -19.00421 -18.74285 -18.37856 -18.07599 -17.72869 -17.44094 -17.11421 -16.48509 -16.26152 -15.76671 -15.62433 -15.14065 -14.92594 -14.57031 -14.51464 -14.39481 -14.11492 -13.92972 -13.72343 -13.50988 -13.36152 -13.25765 -13.14872 -13.03924 -12.95575 -12.81661 -12.59621 -12.41154 -12.10723 -12.06157 -11.96567 -11.83762 -11.76902 -11.66513 -11.41485 -11.29592 -10.75587 -10.38774 -9.85962 -8.25979 -6.32096 -0.98187 -0.72792 0.76652 1.22040 1.36193 1.40720 1.42882 1.51528 1.57298 2.23181 2.37880 2.47381 3.07012 3.22624 3.36621 3.51680 3.77932 3.87949 4.02679 4.10657 4.18215 4.23675 4.26376 4.33953 4.59156 4.62299 4.64028 4.72868 4.81789 4.85864 4.98895 5.01347 5.04539 5.07265 5.08899 5.23507 5.28803 5.42424 5.48771 5.50995 5.54566 5.71445 6.31557 6.32252 6.70937 7.29958 8.91651 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004643 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.830000 B = 6028.925244 C = 6469.211662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.338 6.338 3 C 0.512 3.488 4 O -0.510 6.510 5 C -0.135 4.135 6 C -0.176 4.176 7 C 0.020 3.980 8 O -0.117 6.117 9 C -0.500 4.500 10 S 2.700 3.300 11 O -0.972 6.972 12 O -0.939 6.939 13 N -0.968 5.968 14 C 0.234 3.766 15 C -0.542 4.542 16 H 0.029 0.971 17 C 0.009 3.991 18 N -0.948 5.948 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.222 1.222 23 C 0.113 3.887 24 C -0.111 4.111 25 C -0.139 4.139 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.211 0.789 31 H 0.278 0.722 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.268 0.732 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -24.059 10.676 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.253 6.253 3 C 0.356 3.644 4 O -0.400 6.400 5 C -0.139 4.139 6 C -0.195 4.195 7 C -0.049 4.049 8 O -0.010 6.010 9 C -0.633 4.633 10 S 2.784 3.216 11 O -0.962 6.962 12 O -0.929 6.929 13 N -0.808 5.808 14 C 0.110 3.890 15 C -0.581 4.581 16 H 0.048 0.952 17 C -0.189 4.189 18 N -0.588 5.588 19 Si 0.758 3.242 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.144 1.144 23 C -0.012 4.012 24 C -0.131 4.131 25 C -0.197 4.197 26 C -0.216 4.216 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.227 0.773 31 H 0.294 0.706 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.675 -23.223 10.267 25.400 hybrid contribution 0.124 0.004 -0.705 0.716 sum -0.551 -23.218 9.563 25.116 Atomic orbital electron populations 1.23783 0.73440 1.06694 1.03001 1.86512 1.25758 1.29507 1.83558 1.20395 0.87947 0.82701 0.73321 1.91069 1.66952 1.36636 1.45338 1.20761 0.91426 0.94663 1.07097 1.23516 0.89424 1.00313 1.06223 1.25737 1.02640 0.79104 0.97413 1.84033 1.22405 1.26557 1.67973 1.36167 0.88471 1.22061 1.16627 1.02042 0.73306 0.72619 0.73629 1.93609 1.86013 1.80209 1.36377 1.93589 1.48177 1.85880 1.65241 1.57025 1.40194 1.62390 1.21225 1.19334 0.85635 0.93592 0.90476 1.21631 1.03229 1.02260 1.30972 0.95216 1.25903 1.02905 0.95427 0.94625 1.70069 1.37151 1.16606 1.34950 0.85888 0.78173 0.79354 0.80806 1.19470 1.20294 1.14388 1.21731 1.00637 1.00729 0.78081 1.21494 0.99133 0.95800 0.96710 1.21748 1.02700 1.01190 0.94074 1.22066 1.01915 0.95309 1.02337 0.91621 0.91860 0.83268 0.77251 0.70648 0.91409 0.95008 0.92332 0.90618 0.89193 0.90345 0.92153 0.90624 0.92533 0.93182 0.89880 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.57 113.37 1.20 1.60 16 2 O -0.34 -8.08 10.48 -56.76 -0.59 -8.68 16 3 C 0.51 16.73 7.95 70.19 0.56 17.29 16 4 O -0.51 -20.82 13.38 27.16 0.36 -20.45 16 5 C -0.13 -4.07 6.31 -19.00 -0.12 -4.19 16 6 C -0.18 -3.18 11.05 23.65 0.26 -2.92 16 7 C 0.02 0.31 12.03 66.89 0.80 1.12 16 8 O -0.12 -3.17 8.48 4.69 0.04 -3.13 16 9 C -0.50 -17.29 6.34 67.41 0.43 -16.87 16 10 S 2.70 120.53 5.07 -56.49 -0.29 120.25 16 11 O -0.97 -52.53 17.36 -128.00 -2.22 -54.76 16 12 O -0.94 -43.14 13.68 -118.90 -1.63 -44.77 16 13 N -0.97 -40.98 2.51 -519.84 -1.31 -42.28 16 14 C 0.23 10.88 4.08 85.63 0.35 11.23 16 15 C -0.54 -31.85 9.94 25.60 0.25 -31.59 16 16 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 17 C 0.01 0.54 5.47 84.66 0.46 1.00 16 18 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.94 42.14 27.47 68.60 1.88 44.03 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.22 -8.44 6.54 99.48 0.65 -7.79 16 23 C 0.11 4.00 5.23 86.38 0.45 4.45 16 24 C -0.11 -3.01 2.97 -10.79 -0.03 -3.04 16 25 C -0.14 -2.98 9.18 71.98 0.66 -2.32 16 26 C -0.16 -3.82 9.01 71.98 0.65 -3.17 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.15 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.28 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.07 2.80 5.87 -2.39 -0.01 2.78 16 33 H 0.03 1.46 7.30 -2.39 -0.02 1.45 16 34 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 36 H 0.09 3.10 6.61 -2.39 -0.02 3.08 16 37 H 0.08 2.18 6.86 -2.39 -0.02 2.17 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.26 4.47 -2.39 -0.01 1.25 16 42 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 43 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -88.06 370.06 3.45 -84.61 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.97 Total: 12.67 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 5.92 Total: -27.41 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -1.01 Total: -102.36 kcal Atomic # 8 Polarization: -127.75 SS G_CDS: -4.04 Total: -131.79 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Atomic # 16 Polarization: 120.53 SS G_CDS: -0.29 Total: 120.25 kcal Total: -88.06 3.45 -84.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474931774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.673 kcal (2) G-P(sol) polarization free energy of solvation -88.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds