Wall clock time and date at job start Wed Apr 1 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35949 * 117.00416 * 2 1 4 4 N 1.30347 * 121.63695 * 0.26778 * 3 2 1 5 5 S 1.69584 * 107.17133 * 180.22753 * 4 3 2 6 6 C 1.72030 * 95.78119 * 359.72801 * 5 4 3 7 7 C 1.35061 * 105.59902 * 0.02562 * 6 5 4 8 8 C 1.50703 * 122.63593 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47107 * 260.02065 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47043 * 180.02562 * 11 10 9 13 13 C 1.46504 * 119.99976 * 270.00348 * 12 11 10 14 14 C 1.34777 * 120.00217 * 89.99639 * 12 11 10 15 15 O 1.21277 * 119.99826 * 0.02562 * 14 12 11 16 16 C 1.50698 * 120.00137 * 179.97438 * 14 12 11 17 17 S 1.80998 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.76204 * 100.00038 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99880 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99834 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99722 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47213 * 60.00343 * 22 20 18 24 24 H 1.48498 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47457 * 299.99955 * 22 20 18 26 26 H 1.09002 * 109.47115 * 299.99908 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99723 * 1 2 3 28 28 H 1.08995 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08002 * 127.20048 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47152 * 140.02152 * 8 7 6 31 31 H 1.09001 * 109.46980 * 20.02253 * 8 7 6 32 32 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 33 33 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 34 34 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 35 35 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 36 36 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 37 37 H 1.08998 * 109.47582 * 89.99375 * 13 12 11 38 38 H 1.08999 * 109.46704 * 210.00035 * 13 12 11 39 39 H 1.09000 * 109.46782 * 329.99608 * 13 12 11 40 40 H 1.09000 * 109.47207 * 300.00319 * 16 14 12 41 41 H 1.09001 * 109.47099 * 60.00514 * 16 14 12 42 42 H 0.97000 * 119.99558 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 7 1.3680 2.3243 0.0052 5 16 2.4910 3.5950 -0.0032 6 6 3.8882 2.5915 -0.0057 7 6 3.4243 1.3230 -0.0005 8 6 4.3371 0.1239 -0.0001 9 7 4.4381 -0.4151 -1.3629 10 6 5.3225 -1.5875 -1.4012 11 6 5.4029 -2.1190 -2.8336 12 7 6.2844 -3.2885 -2.8717 13 6 7.7188 -3.1171 -3.1155 14 6 5.7757 -4.5222 -2.6823 15 8 4.5883 -4.6641 -2.4809 16 6 6.6823 -5.7253 -2.7221 17 16 5.7089 -7.2241 -2.4359 18 6 6.9817 -8.4387 -2.5324 19 1 8.0018 -8.1382 -2.7207 20 6 6.6734 -9.7818 -2.3652 21 7 5.4302 -10.1480 -2.1352 22 14 8.0229 -11.0693 -2.4667 23 1 9.0418 -10.8022 -1.4199 24 1 7.4375 -12.4176 -2.2557 25 1 8.6622 -11.0120 -3.8058 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.9204 2.9093 -0.0104 30 1 3.9327 -0.6403 0.6637 31 1 5.3266 0.4206 0.3476 32 1 3.5260 -0.6376 -1.7325 33 1 6.3187 -1.3023 -1.0634 34 1 4.9253 -2.3636 -0.7470 35 1 4.4067 -2.4041 -3.1719 36 1 5.8003 -1.3426 -3.4875 37 1 8.2358 -2.9859 -2.1649 38 1 8.1090 -3.9994 -3.6227 39 1 7.8786 -2.2384 -3.7403 40 1 7.1633 -5.7857 -3.6984 41 1 7.4434 -5.6325 -1.9473 42 1 5.2148 -11.0866 -2.0188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493480657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:01 Heat of formation + Delta-G solvation = -20.203694 kcal Electronic energy + Delta-G solvation = -24468.417794 eV Core-core repulsion = 20702.537028 eV Total energy + Delta-G solvation = -3765.880766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65832 -39.49555 -37.52866 -36.32449 -34.99646 -32.43099 -32.22358 -30.25909 -28.45049 -28.06816 -26.57544 -25.54717 -25.00720 -23.39516 -22.33407 -20.51799 -19.20308 -18.41415 -17.68817 -17.48373 -16.70630 -16.53832 -16.24668 -15.81989 -15.44642 -15.21886 -14.81014 -14.74280 -14.30501 -13.91225 -13.84442 -13.53788 -13.26216 -13.19702 -12.85872 -12.63840 -12.51082 -12.32202 -12.24550 -12.09565 -11.76419 -11.49505 -11.44933 -11.08230 -11.04549 -11.03852 -10.98677 -10.76462 -10.02173 -9.81726 -9.38169 -9.06175 -8.77722 -8.62226 -8.47198 -8.23249 -6.50509 -6.21745 -3.92478 0.33156 1.04576 1.35580 2.04137 2.84504 2.91697 3.05104 3.23066 3.25259 3.28721 3.58305 4.18590 4.20301 4.29957 4.63465 4.78839 4.82978 4.86822 4.94755 5.04232 5.09777 5.12931 5.14325 5.17018 5.27927 5.43928 5.46586 5.48928 5.52904 5.57767 5.70022 5.84873 5.86293 5.89187 5.96148 6.13249 6.54712 6.72692 6.78146 7.11890 7.52734 7.59050 8.34702 8.55387 9.23304 10.85609 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.001816 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.876492 B =15413.125023 C =16300.081899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.292 6.292 3 C 0.318 3.682 4 N -0.532 5.532 5 S 0.281 5.719 6 C -0.169 4.169 7 C -0.164 4.164 8 C 0.132 3.868 9 N -0.683 5.683 10 C 0.044 3.956 11 C 0.121 3.879 12 N -0.624 5.624 13 C 0.081 3.919 14 C 0.532 3.468 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.191 0.809 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.346 0.654 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 28.389 3.431 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.197 6.197 3 C 0.103 3.897 4 N -0.371 5.371 5 S 0.431 5.569 6 C -0.317 4.317 7 C -0.183 4.183 8 C 0.000 4.000 9 N -0.314 5.314 10 C -0.087 4.087 11 C -0.002 4.002 12 N -0.361 5.361 13 C -0.062 4.062 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.209 0.791 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.823 29.792 3.575 30.248 hybrid contribution 2.618 -2.687 0.152 3.754 sum -1.206 27.105 3.727 27.387 Atomic orbital electron populations 1.23013 0.76461 1.03965 1.02404 1.86320 1.23155 1.22357 1.87870 1.20114 0.89883 0.85322 0.94387 1.76559 1.26270 1.01197 1.33121 1.83953 0.90355 1.13027 1.69598 1.26359 1.06494 0.96480 1.02389 1.19109 0.91165 0.96921 1.11076 1.20348 0.97321 0.91824 0.90491 1.60520 1.17443 1.32778 1.20680 1.22330 0.97417 0.90949 0.97964 1.21261 0.96075 0.86955 0.95944 1.47822 1.08696 1.06033 1.73500 1.21781 0.80525 1.02847 1.01065 1.20373 0.88811 0.83454 0.75357 1.90692 1.16185 1.85217 1.46813 1.23557 1.02808 0.98876 1.04814 1.85395 1.12068 0.92462 1.93644 1.22819 0.95331 0.93192 1.57020 0.90986 1.24995 0.96262 0.97798 0.94544 1.70011 1.17515 1.17470 1.45282 0.86224 0.80893 0.79602 0.78778 1.19940 1.20818 1.19934 0.92220 0.92070 0.87730 0.79132 0.93276 0.89695 0.83598 0.90885 0.94109 0.90021 0.90048 0.92831 0.90640 0.91273 0.89221 0.89279 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.47 101.05 1.06 1.36 16 2 O -0.29 -3.19 10.13 -19.58 -0.20 -3.39 16 3 C 0.32 3.39 7.40 -18.17 -0.13 3.26 16 4 N -0.53 -5.67 11.14 28.92 0.32 -5.35 16 5 S 0.28 2.14 23.71 -107.50 -2.55 -0.41 16 6 C -0.17 -1.17 11.15 29.60 0.33 -0.84 16 7 C -0.16 -1.50 5.35 -105.74 -0.57 -2.07 16 8 C 0.13 1.21 5.70 -4.98 -0.03 1.18 16 9 N -0.68 -6.91 6.49 -115.05 -0.75 -7.66 16 10 C 0.04 0.49 6.01 -3.82 -0.02 0.47 16 11 C 0.12 1.46 5.71 -4.05 -0.02 1.44 16 12 N -0.62 -8.67 2.87 -181.57 -0.52 -9.20 16 13 C 0.08 0.82 10.29 59.85 0.62 1.44 16 14 C 0.53 10.08 7.69 -10.99 -0.08 9.99 16 15 O -0.52 -11.71 15.44 5.56 0.09 -11.63 16 16 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.35 3.80 8.72 -39.29 -0.34 3.46 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 36 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 39 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 40 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 41 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -35.23 386.97 -8.80 -44.03 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.03 Total: 0.36 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 1.51 Total: 0.43 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.21 Total: -47.63 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.11 Total: -15.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -4.76 Total: -4.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.23 -8.80 -44.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493480657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.823 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds