Wall clock time and date at job start Wed Apr 1 2020 04:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99954 * 2 1 4 4 O 1.20822 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99706 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46957 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47395 * 180.02562 * 6 5 3 8 8 C 1.36919 * 120.00021 * 269.99787 * 7 6 5 9 9 H 1.08006 * 119.99887 * 139.13988 * 8 7 6 10 10 C 1.38999 * 120.00402 * 319.14217 * 8 7 6 11 11 N 1.31394 * 120.00346 * 165.36471 * 10 8 7 12 12 Si 1.86807 * 119.99483 * 345.36517 * 10 8 7 13 13 H 1.48502 * 109.47078 * 95.04528 * 12 10 8 14 14 H 1.48497 * 109.46848 * 215.04286 * 12 10 8 15 15 H 1.48497 * 109.47188 * 335.04308 * 12 10 8 16 16 C 1.34781 * 120.00057 * 89.99668 * 7 6 5 17 17 O 1.21665 * 119.99923 * 4.44194 * 16 7 6 18 18 C 1.47089 * 119.99819 * 184.44453 * 16 7 6 19 19 C 1.35992 * 120.50172 * 313.86202 * 18 16 7 20 20 O 1.33716 * 122.48870 * 179.97438 * 19 18 16 21 21 C 1.34498 * 122.86718 * 359.97438 * 20 19 18 22 22 O 1.21616 * 120.25819 * 180.02562 * 21 20 19 23 23 C 1.46868 * 119.48506 * 0.28031 * 21 20 19 24 24 C 1.39365 * 122.09383 * 179.72113 * 23 21 20 25 25 C 1.37834 * 119.49387 * 180.02562 * 24 23 21 26 26 C 1.38796 * 120.69381 * 0.02562 * 25 24 23 27 27 C 1.37944 * 120.69105 * 359.39443 * 26 25 24 28 28 C 1.39045 * 119.51415 * 0.87715 * 27 26 25 29 29 H 1.09005 * 109.47167 * 60.00159 * 1 2 3 30 30 H 1.09005 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47189 * 300.00140 * 1 2 3 32 32 H 1.08989 * 109.47301 * 60.00254 * 5 3 2 33 33 H 1.09003 * 109.47485 * 299.99915 * 5 3 2 34 34 H 1.09003 * 109.47274 * 59.99978 * 6 5 3 35 35 H 1.09003 * 109.46748 * 300.00114 * 6 5 3 36 36 H 0.96998 * 120.00121 * 179.97438 * 11 10 8 37 37 H 1.08001 * 118.75346 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.25295 * 0.02562 * 24 23 21 39 39 H 1.08001 * 119.65128 * 180.02562 * 25 24 23 40 40 H 1.08001 * 119.65549 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.24045 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1468 2.8542 1.1868 9 1 7.0603 2.2893 1.3005 10 6 5.6653 3.6171 2.2442 11 7 6.1415 3.4360 3.4554 12 14 4.3411 4.9000 1.9433 13 1 3.0077 4.3108 2.2267 14 1 4.5678 6.0643 2.8367 15 1 4.3952 5.3445 0.5275 16 6 6.1360 2.8544 -1.1662 17 8 5.5269 2.9045 -2.2182 18 6 7.6067 2.8327 -1.1681 19 6 8.3100 3.6348 -0.3248 20 8 9.6467 3.6469 -0.2928 21 6 10.4029 2.8696 -1.0883 22 8 11.6161 2.9186 -1.0191 23 6 9.7523 1.9652 -2.0453 24 6 10.4826 1.1406 -2.8990 25 6 9.8166 0.3126 -3.7769 26 6 8.4294 0.2932 -3.8185 27 6 7.6884 1.0931 -2.9734 28 6 8.3411 1.9399 -2.0844 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9563 0.7806 -0.8891 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6107 3.2363 -0.8889 36 1 5.8058 3.9687 4.1932 37 1 7.7683 4.2862 0.3451 38 1 11.5622 1.1503 -2.8729 39 1 10.3800 -0.3278 -4.4393 40 1 7.9247 -0.3618 -4.5132 41 1 6.6093 1.0719 -3.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535417718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:13 Heat of formation + Delta-G solvation = -133.651368 kcal Electronic energy + Delta-G solvation = -30308.883363 eV Core-core repulsion = 25927.593563 eV Total energy + Delta-G solvation = -4381.289800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47756 -40.34083 -39.21821 -38.48256 -37.56253 -36.45529 -35.36520 -33.16516 -32.46932 -31.25262 -31.11095 -29.43607 -27.68204 -25.48983 -24.95617 -24.40695 -23.90105 -22.05009 -20.66923 -19.90319 -18.71753 -18.45697 -17.87802 -17.41622 -16.71640 -16.52665 -16.44167 -16.34267 -15.97114 -15.40268 -15.07611 -14.86924 -14.37145 -14.24338 -14.00867 -13.74978 -13.54893 -13.24178 -12.97267 -12.91709 -12.82256 -12.65011 -12.56884 -12.25218 -12.10311 -11.86904 -11.76760 -11.31500 -11.21284 -11.01057 -10.74819 -10.41851 -10.32695 -10.10240 -10.01766 -9.81103 -9.47643 -9.06532 -8.99056 -8.15844 -7.83241 -6.71692 -4.45499 0.69562 0.96822 2.01354 2.39150 2.65994 2.74401 2.78632 2.96064 3.11231 3.16025 3.48256 3.88283 3.93496 4.05725 4.22544 4.68335 4.74376 4.88048 4.94712 5.02606 5.08944 5.15358 5.26066 5.34657 5.35256 5.40297 5.50118 5.53877 5.74378 5.86485 5.89807 5.98413 6.11345 6.16232 6.31382 6.37795 6.44788 6.51403 6.54383 6.87410 7.03082 7.39861 7.63563 7.75578 7.89530 7.94807 8.61061 8.97991 9.29062 10.35697 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004201 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.396518 B = 6663.304516 C = 8573.368973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.510 6.510 5 C -0.123 4.123 6 C 0.115 3.885 7 N -0.456 5.456 8 C -0.371 4.371 9 H 0.111 0.889 10 C 0.074 3.926 11 N -0.847 5.847 12 Si 0.871 3.129 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.257 1.257 16 C 0.544 3.456 17 O -0.579 6.579 18 C -0.216 4.216 19 C 0.155 3.845 20 O -0.266 6.266 21 C 0.521 3.479 22 O -0.464 6.464 23 C -0.192 4.192 24 C -0.044 4.044 25 C -0.146 4.146 26 C -0.079 4.079 27 C -0.113 4.113 28 C 0.041 3.959 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.281 0.719 37 H 0.218 0.782 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -6.616 -8.016 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.008 4.008 7 N -0.176 5.176 8 C -0.497 4.497 9 H 0.128 0.872 10 C -0.137 4.137 11 N -0.480 5.480 12 Si 0.698 3.302 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.181 1.181 16 C 0.334 3.666 17 O -0.463 6.463 18 C -0.221 4.221 19 C 0.091 3.909 20 O -0.175 6.175 21 C 0.368 3.632 22 O -0.351 6.351 23 C -0.194 4.194 24 C -0.063 4.063 25 C -0.164 4.164 26 C -0.097 4.097 27 C -0.131 4.131 28 C 0.040 3.960 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.648 -6.093 -8.123 10.287 hybrid contribution -1.118 0.468 0.209 1.230 sum -2.766 -5.624 -7.913 10.095 Atomic orbital electron populations 1.23218 0.76940 1.03326 1.02443 1.86532 1.23041 1.33896 1.84373 1.23952 0.92255 0.81088 0.71689 1.90653 1.67365 1.36329 1.45425 1.21784 0.86329 1.01521 1.06562 1.21442 0.82679 0.93421 1.03273 1.43559 1.03866 1.64362 1.05765 1.19187 1.11319 1.30936 0.88277 0.87156 1.25381 0.97123 0.96424 0.94722 1.69673 1.41476 1.37689 0.99184 0.86996 0.81781 0.81621 0.79822 1.19320 1.21083 1.18098 1.17493 0.85431 0.79785 0.83905 1.90685 1.69343 1.54737 1.31558 1.20355 0.95093 1.04278 1.02343 1.24517 0.77022 0.96038 0.93293 1.83348 1.19872 1.57812 1.56465 1.20476 0.86231 0.78090 0.78415 1.90871 1.11261 1.65645 1.67319 1.20055 0.93431 1.03412 1.02474 1.20975 1.00184 0.92628 0.92474 1.21120 0.94510 1.00526 1.00211 1.21394 0.93953 0.97113 0.97237 1.21333 1.01485 0.95352 0.94916 1.18762 0.90813 0.93177 0.93283 0.92050 0.88354 0.92027 0.87494 0.86520 0.90659 0.89645 0.90880 0.76570 0.84534 0.85320 0.85344 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -5.23 10.57 -39.26 -0.41 -5.65 16 3 C 0.47 7.90 7.96 36.01 0.29 8.19 16 4 O -0.51 -9.89 15.73 -18.75 -0.29 -10.19 16 5 C -0.12 -2.10 6.14 -27.88 -0.17 -2.27 16 6 C 0.11 2.32 3.40 -4.04 -0.01 2.31 16 7 N -0.46 -9.56 2.15 -116.15 -0.25 -9.81 16 8 C -0.37 -8.28 7.07 -15.00 -0.11 -8.39 16 9 H 0.11 2.61 6.94 -52.48 -0.36 2.25 16 10 C 0.07 1.72 5.40 -17.46 -0.09 1.63 16 11 N -0.85 -21.00 13.96 55.50 0.77 -20.23 16 12 Si 0.87 18.87 24.72 -169.99 -4.20 14.67 16 13 H -0.27 -5.87 6.78 56.52 0.38 -5.49 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.26 -5.62 7.02 56.52 0.40 -5.22 16 16 C 0.54 11.20 6.80 -12.67 -0.09 11.11 16 17 O -0.58 -12.69 14.94 5.22 0.08 -12.61 16 18 C -0.22 -4.08 5.27 -103.34 -0.55 -4.62 16 19 C 0.16 2.80 9.21 29.93 0.28 3.08 16 20 O -0.27 -4.82 9.75 -17.90 -0.17 -4.99 16 21 C 0.52 9.36 8.18 34.22 0.28 9.64 16 22 O -0.46 -8.95 17.39 -19.36 -0.34 -9.29 16 23 C -0.19 -3.15 5.89 -104.86 -0.62 -3.77 16 24 C -0.04 -0.60 9.66 -39.31 -0.38 -0.98 16 25 C -0.15 -1.68 10.01 -39.52 -0.40 -2.07 16 26 C -0.08 -0.96 10.02 -39.48 -0.40 -1.36 16 27 C -0.11 -1.75 9.31 -39.39 -0.37 -2.12 16 28 C 0.04 0.70 5.90 -104.70 -0.62 0.08 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.11 1.69 8.14 -51.94 -0.42 1.26 16 33 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.08 1.62 3.07 -51.93 -0.16 1.46 16 35 H 0.09 1.77 7.32 -51.93 -0.38 1.39 16 36 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.22 3.88 6.56 -52.49 -0.34 3.54 16 38 H 0.14 1.66 7.80 -52.49 -0.41 1.25 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 2.35 6.38 -52.49 -0.33 2.01 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -28.73 354.09 -5.48 -34.20 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.11 Total: 6.65 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -1.88 Total: 11.89 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.52 Total: -30.03 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.14 Total: -42.72 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.20 Total: 14.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.73 -5.48 -34.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535417718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.447 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds