Wall clock time and date at job start Wed Apr 1 2020 04:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99954 * 2 1 4 4 O 1.20822 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99706 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46957 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47395 * 180.02562 * 6 5 3 8 8 C 1.36919 * 120.00021 * 269.99787 * 7 6 5 9 9 H 1.08006 * 119.99887 * 139.13988 * 8 7 6 10 10 C 1.38999 * 120.00402 * 319.14217 * 8 7 6 11 11 N 1.31394 * 120.00346 * 165.36471 * 10 8 7 12 12 Si 1.86807 * 119.99483 * 345.36517 * 10 8 7 13 13 H 1.48502 * 109.47078 * 95.04528 * 12 10 8 14 14 H 1.48497 * 109.46848 * 215.04286 * 12 10 8 15 15 H 1.48497 * 109.47188 * 335.04308 * 12 10 8 16 16 C 1.34781 * 120.00057 * 89.99668 * 7 6 5 17 17 O 1.21665 * 119.99923 * 4.44194 * 16 7 6 18 18 C 1.47089 * 119.99819 * 184.44453 * 16 7 6 19 19 C 1.35992 * 120.50172 * 313.86202 * 18 16 7 20 20 O 1.33716 * 122.48870 * 179.97438 * 19 18 16 21 21 C 1.34498 * 122.86718 * 359.97438 * 20 19 18 22 22 O 1.21616 * 120.25819 * 180.02562 * 21 20 19 23 23 C 1.46868 * 119.48506 * 0.28031 * 21 20 19 24 24 C 1.39365 * 122.09383 * 179.72113 * 23 21 20 25 25 C 1.37834 * 119.49387 * 180.02562 * 24 23 21 26 26 C 1.38796 * 120.69381 * 0.02562 * 25 24 23 27 27 C 1.37944 * 120.69105 * 359.39443 * 26 25 24 28 28 C 1.39045 * 119.51415 * 0.87715 * 27 26 25 29 29 H 1.09005 * 109.47167 * 60.00159 * 1 2 3 30 30 H 1.09005 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47189 * 300.00140 * 1 2 3 32 32 H 1.08989 * 109.47301 * 60.00254 * 5 3 2 33 33 H 1.09003 * 109.47485 * 299.99915 * 5 3 2 34 34 H 1.09003 * 109.47274 * 59.99978 * 6 5 3 35 35 H 1.09003 * 109.46748 * 300.00114 * 6 5 3 36 36 H 0.96998 * 120.00121 * 179.97438 * 11 10 8 37 37 H 1.08001 * 118.75346 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.25295 * 0.02562 * 24 23 21 39 39 H 1.08001 * 119.65128 * 180.02562 * 25 24 23 40 40 H 1.08001 * 119.65549 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.24045 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8187 0.0011 8 6 6.1468 2.8542 1.1868 9 1 7.0603 2.2893 1.3005 10 6 5.6653 3.6171 2.2442 11 7 6.1415 3.4360 3.4554 12 14 4.3411 4.9000 1.9433 13 1 3.0077 4.3108 2.2267 14 1 4.5678 6.0643 2.8367 15 1 4.3952 5.3445 0.5275 16 6 6.1360 2.8544 -1.1662 17 8 5.5269 2.9045 -2.2182 18 6 7.6067 2.8327 -1.1681 19 6 8.3100 3.6348 -0.3248 20 8 9.6467 3.6469 -0.2928 21 6 10.4029 2.8696 -1.0883 22 8 11.6161 2.9186 -1.0191 23 6 9.7523 1.9652 -2.0453 24 6 10.4826 1.1406 -2.8990 25 6 9.8166 0.3126 -3.7769 26 6 8.4294 0.2932 -3.8185 27 6 7.6884 1.0931 -2.9734 28 6 8.3411 1.9399 -2.0844 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9563 0.7806 -0.8891 33 1 3.9557 0.7809 0.8908 34 1 3.6101 3.2360 0.8911 35 1 3.6107 3.2363 -0.8889 36 1 5.8058 3.9687 4.1932 37 1 7.7683 4.2862 0.3451 38 1 11.5622 1.1503 -2.8729 39 1 10.3800 -0.3278 -4.4393 40 1 7.9247 -0.3618 -4.5132 41 1 6.6093 1.0719 -3.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535417718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:12 Heat of formation + Delta-G solvation = -148.661243 kcal Electronic energy + Delta-G solvation = -30309.534240 eV Core-core repulsion = 25927.593563 eV Total energy + Delta-G solvation = -4381.940677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.86139 -41.67376 -40.80493 -39.67537 -38.99814 -37.75109 -37.03187 -34.57631 -34.18503 -32.66124 -32.29760 -30.73077 -28.74276 -27.19257 -26.41516 -25.68351 -25.22789 -23.30893 -21.97910 -21.46513 -20.06376 -19.92161 -19.31761 -18.74760 -18.28458 -17.89529 -17.79297 -17.71617 -17.37472 -16.81344 -16.45738 -16.32209 -15.79639 -15.58006 -15.37815 -15.00284 -14.98434 -14.56163 -14.47133 -14.30758 -14.18921 -14.08503 -13.89224 -13.70599 -13.56091 -13.05927 -12.96302 -12.89375 -12.70743 -12.31777 -12.14178 -11.87267 -11.78034 -11.66485 -11.48485 -11.18293 -11.05558 -10.70760 -10.17427 -9.90892 -9.14526 -8.56110 -6.28835 -0.50656 -0.28959 0.69854 1.05665 1.19422 1.26401 1.32289 1.38815 1.44128 1.54781 1.96903 2.10923 2.43144 2.76678 2.81715 2.99714 3.49137 3.63628 3.69833 3.82942 3.89502 4.03694 4.09724 4.26330 4.28828 4.28936 4.30396 4.38592 4.53727 4.58134 4.63668 4.67770 4.78205 4.80897 5.01632 5.16847 5.26347 5.29966 5.36138 5.42698 5.82653 5.97917 5.99965 6.11469 6.23444 6.61426 6.82495 7.22574 7.56341 8.54705 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004201 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.396518 B = 6663.304516 C = 8573.368973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.540 6.540 5 C -0.117 4.117 6 C 0.113 3.887 7 N -0.462 5.462 8 C -0.351 4.351 9 H 0.096 0.904 10 C 0.050 3.950 11 N -0.881 5.881 12 Si 0.910 3.090 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.549 3.451 17 O -0.591 6.591 18 C -0.224 4.224 19 C 0.154 3.846 20 O -0.273 6.273 21 C 0.517 3.483 22 O -0.484 6.484 23 C -0.205 4.205 24 C -0.046 4.046 25 C -0.125 4.125 26 C -0.062 4.062 27 C -0.129 4.129 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.283 0.717 37 H 0.213 0.787 38 H 0.152 0.848 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -8.869 -10.161 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.155 4.155 6 C -0.010 4.010 7 N -0.182 5.182 8 C -0.478 4.478 9 H 0.113 0.887 10 C -0.157 4.157 11 N -0.516 5.516 12 Si 0.737 3.263 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.187 1.187 16 C 0.339 3.661 17 O -0.477 6.477 18 C -0.229 4.229 19 C 0.089 3.911 20 O -0.183 6.183 21 C 0.366 3.634 22 O -0.373 6.373 23 C -0.207 4.207 24 C -0.064 4.064 25 C -0.142 4.142 26 C -0.080 4.080 27 C -0.147 4.147 28 C 0.015 3.985 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.170 0.830 39 H 0.192 0.808 40 H 0.185 0.815 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.616 -8.363 -10.273 13.345 hybrid contribution -1.139 1.037 0.720 1.700 sum -2.755 -7.326 -9.554 12.351 Atomic orbital electron populations 1.23606 0.74594 1.05951 1.02560 1.86507 1.25245 1.32179 1.83639 1.23771 0.92044 0.81395 0.71023 1.90643 1.67916 1.37428 1.47003 1.21630 0.87036 0.99364 1.07468 1.21389 0.82026 0.95471 1.02095 1.43598 1.04258 1.64918 1.05475 1.18974 1.10625 1.29788 0.88406 0.88661 1.25669 0.98144 0.97314 0.94598 1.69712 1.43070 1.39020 0.99833 0.86390 0.80275 0.80463 0.79170 1.19863 1.20881 1.18740 1.17690 0.86141 0.78810 0.83433 1.90665 1.69923 1.55198 1.31884 1.20379 0.94204 1.05092 1.03192 1.24309 0.77067 0.96292 0.93385 1.83293 1.19804 1.58249 1.56918 1.20819 0.86069 0.78055 0.78455 1.90845 1.11909 1.66419 1.68082 1.20073 0.93182 1.04240 1.03198 1.21319 1.01048 0.92075 0.91973 1.21631 0.94370 0.99194 0.99038 1.21841 0.94379 0.95731 0.96038 1.21379 1.01231 0.96283 0.95817 1.18801 0.91198 0.94235 0.94246 0.91781 0.84492 0.92166 0.86073 0.86065 0.92005 0.90526 0.90652 0.77055 0.83021 0.80771 0.81487 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.80 10.57 -51.41 -0.54 -10.35 16 3 C 0.47 15.68 7.96 71.24 0.57 16.25 16 4 O -0.54 -20.83 15.73 21.98 0.35 -20.49 16 5 C -0.12 -3.92 6.14 29.85 0.18 -3.74 16 6 C 0.11 4.60 3.40 86.38 0.29 4.90 16 7 N -0.46 -19.68 2.15 -639.61 -1.38 -21.05 16 8 C -0.35 -16.02 7.07 84.08 0.59 -15.42 16 9 H 0.10 4.65 6.94 -2.91 -0.02 4.63 16 10 C 0.05 2.37 5.40 84.94 0.46 2.83 16 11 N -0.88 -44.54 13.96 21.67 0.30 -44.24 16 12 Si 0.91 39.64 24.72 68.60 1.70 41.34 16 13 H -0.27 -12.00 6.78 99.48 0.67 -11.33 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.26 -11.59 7.02 99.48 0.70 -10.89 16 16 C 0.55 22.89 6.80 86.56 0.59 23.48 16 17 O -0.59 -26.07 14.94 -4.24 -0.06 -26.14 16 18 C -0.22 -8.62 5.27 -19.03 -0.10 -8.72 16 19 C 0.15 5.75 9.21 67.30 0.62 6.37 16 20 O -0.27 -10.24 9.75 24.67 0.24 -10.00 16 21 C 0.52 18.77 8.18 70.08 0.57 19.34 16 22 O -0.48 -18.72 17.39 19.46 0.34 -18.38 16 23 C -0.21 -6.56 5.89 -20.02 -0.12 -6.68 16 24 C -0.05 -1.12 9.66 22.45 0.22 -0.90 16 25 C -0.12 -2.27 10.01 22.31 0.22 -2.04 16 26 C -0.06 -1.26 10.02 22.33 0.22 -1.04 16 27 C -0.13 -3.77 9.31 22.39 0.21 -3.56 16 28 C 0.02 0.55 5.90 -19.91 -0.12 0.43 16 29 H 0.06 1.23 8.13 -2.38 -0.02 1.22 16 30 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.12 3.71 8.14 -2.39 -0.02 3.70 16 33 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 34 H 0.06 2.69 3.07 -2.39 -0.01 2.68 16 35 H 0.08 3.23 7.32 -2.39 -0.02 3.21 16 36 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 37 H 0.21 7.99 6.56 -2.91 -0.02 7.98 16 38 H 0.15 3.21 7.80 -2.91 -0.02 3.19 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.13 4.16 6.38 -2.91 -0.02 4.15 16 Total: -1.00 -63.32 354.09 7.61 -55.71 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.06 Total: 20.39 kcal Atomic # 6 Polarization: 27.59 SS G_CDS: 5.61 Total: 33.21 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -1.07 Total: -65.29 kcal Atomic # 8 Polarization: -85.67 SS G_CDS: 0.32 Total: -85.35 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.70 Total: 41.34 kcal Total: -63.32 7.61 -55.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535417718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.956 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds