Wall clock time and date at job start Wed Apr 1 2020 03:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 109.46726 * 2 1 4 4 C 1.36936 * 119.99768 * 275.27871 * 3 2 1 5 5 H 1.08007 * 119.99601 * 146.58792 * 4 3 2 6 6 C 1.38811 * 120.00512 * 326.58691 * 4 3 2 7 7 N 1.31619 * 119.99349 * 336.12417 * 6 4 3 8 8 Si 1.86793 * 120.00157 * 156.12680 * 6 4 3 9 9 H 1.48501 * 109.47487 * 89.99960 * 8 6 4 10 10 H 1.48504 * 109.47048 * 210.00322 * 8 6 4 11 11 H 1.48504 * 109.47318 * 329.99779 * 8 6 4 12 12 S 1.65597 * 119.99810 * 95.28694 * 3 2 1 13 13 O 1.42106 * 104.27764 * 153.92583 * 12 3 2 14 14 O 1.42103 * 104.28036 * 26.06542 * 12 3 2 15 15 C 1.81401 * 104.44723 * 269.99429 * 12 3 2 16 16 C 1.53001 * 109.47206 * 180.02562 * 15 12 3 17 17 H 1.08997 * 109.48375 * 59.97454 * 16 15 12 18 18 C 1.53095 * 109.48211 * 180.02562 * 16 15 12 19 19 C 1.53179 * 109.16021 * 62.38247 * 18 16 15 20 20 C 1.53177 * 109.03658 * 56.98313 * 19 18 16 21 21 C 1.53095 * 109.16322 * 303.01889 * 20 19 18 22 22 H 1.08998 * 109.47449 * 297.62185 * 21 20 19 23 23 C 1.53006 * 109.47939 * 177.60412 * 21 20 19 24 24 F 1.39903 * 109.46923 * 60.01905 * 23 21 20 25 25 F 1.39896 * 109.46936 * 180.02562 * 23 21 20 26 26 F 1.39898 * 109.47176 * 300.01861 * 23 21 20 27 27 O 1.42894 * 109.41491 * 57.60542 * 21 20 19 28 28 H 1.09006 * 109.46666 * 60.00001 * 1 2 3 29 29 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47092 * 300.00207 * 1 2 3 31 31 H 1.08994 * 109.47003 * 240.00333 * 2 1 3 32 32 H 1.08997 * 109.46785 * 119.99841 * 2 1 3 33 33 H 0.97009 * 119.99591 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47237 * 60.00461 * 15 12 3 35 35 H 1.09003 * 109.47264 * 299.99974 * 15 12 3 36 36 H 1.09000 * 109.52146 * 302.47839 * 18 16 15 37 37 H 1.09001 * 109.57286 * 182.31985 * 18 16 15 38 38 H 1.08993 * 109.54769 * 297.11473 * 19 18 16 39 39 H 1.09001 * 109.54167 * 176.84272 * 19 18 16 40 40 H 1.08998 * 109.52511 * 183.10493 * 20 19 18 41 41 H 1.09006 * 109.52530 * 62.92380 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1436 2.0632 -1.1809 5 1 1.9687 3.1286 -1.2104 6 6 2.4955 1.3852 -2.3400 7 7 3.1506 0.2463 -2.2629 8 14 2.0392 2.0893 -4.0089 9 1 3.1326 2.9718 -4.4896 10 1 1.8370 0.9802 -4.9755 11 1 0.7853 2.8757 -3.8884 12 16 2.4188 2.1179 1.4280 13 8 3.3752 3.1019 1.0586 14 8 2.7684 1.0439 2.2904 15 6 0.8792 2.9023 1.9801 16 6 1.1221 3.6252 3.3065 17 1 1.8897 4.3870 3.1700 18 6 -0.1773 4.2868 3.7729 19 6 -1.2321 3.2039 4.0203 20 6 -0.6894 2.2025 5.0446 21 6 0.6299 1.6215 4.5290 22 1 0.4502 1.0801 3.6003 23 6 1.2088 0.6649 5.5735 24 9 0.3019 -0.3743 5.8074 25 9 2.4146 0.1346 5.1024 26 9 1.4393 1.3600 6.7655 27 8 1.5555 2.6836 4.2902 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3962 -0.2277 -3.0729 34 1 0.1118 2.1402 2.1165 35 1 0.5483 3.6210 1.2303 36 1 -0.5330 4.9729 3.0043 37 1 0.0039 4.8366 4.6965 38 1 -1.4506 2.6873 3.0858 39 1 -2.1423 3.6629 4.4063 40 1 -1.4113 1.3982 5.1855 41 1 -0.5177 2.7095 5.9941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561170795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:28 Heat of formation + Delta-G solvation = -285.794568 kcal Electronic energy + Delta-G solvation = -31558.419125 eV Core-core repulsion = 26764.119112 eV Total energy + Delta-G solvation = -4794.300013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -51.14002 -48.67992 -48.58196 -41.11787 -37.83340 -37.62900 -36.55154 -34.94755 -34.08092 -33.51681 -30.90993 -30.32861 -27.37419 -26.44625 -24.67006 -23.85397 -23.26353 -20.94383 -20.16882 -19.50806 -19.39175 -19.26509 -18.82661 -18.11980 -17.81655 -17.01858 -16.66938 -16.61018 -16.17652 -15.95554 -15.45978 -15.43685 -15.22473 -15.06628 -15.00991 -14.75961 -14.74214 -14.55592 -14.44717 -14.05201 -13.87413 -13.68975 -13.59708 -13.16126 -13.02578 -12.85146 -12.80245 -12.72411 -12.58772 -12.56213 -12.21714 -12.09858 -11.91243 -11.83881 -11.68195 -11.45519 -11.34833 -10.93959 -10.67159 -9.53552 -8.12318 -5.87072 -0.39615 1.40687 1.49925 1.51373 1.62324 2.13932 2.26809 2.58070 2.71164 2.94159 3.00159 3.21091 3.34976 3.43527 3.49213 3.59593 3.75872 3.82632 3.91397 4.11002 4.14830 4.38857 4.44749 4.56409 4.71275 4.75077 4.76015 4.77785 4.91764 4.99389 5.04608 5.10337 5.31630 5.33033 5.53162 5.65594 5.67911 6.01329 6.54218 7.16003 7.50859 8.89534 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.004310 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.591606 B = 6495.625905 C = 6888.504546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.861 5.861 4 C -0.309 4.309 5 H 0.094 0.906 6 C -0.011 4.011 7 N -0.899 5.899 8 Si 0.973 3.027 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.251 1.251 12 S 2.554 3.446 13 O -1.014 7.014 14 O -0.999 6.999 15 C -0.645 4.645 16 C 0.095 3.905 17 H 0.124 0.876 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.150 4.150 21 C 0.038 3.962 22 H 0.101 0.899 23 C 0.458 3.542 24 F -0.171 7.171 25 F -0.183 7.183 26 F -0.179 7.179 27 O -0.379 6.379 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 5.187 12.324 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.693 5.693 4 C -0.443 4.443 5 H 0.111 0.889 6 C -0.214 4.214 7 N -0.540 5.540 8 Si 0.797 3.203 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.175 1.175 12 S 2.658 3.342 13 O -1.005 7.005 14 O -0.989 6.989 15 C -0.776 4.776 16 C 0.037 3.963 17 H 0.142 0.858 18 C -0.173 4.173 19 C -0.158 4.158 20 C -0.188 4.188 21 C -0.021 4.021 22 H 0.118 0.882 23 C 0.404 3.596 24 F -0.153 7.153 25 F -0.164 7.164 26 F -0.160 7.160 27 O -0.299 6.299 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.171 0.829 35 H 0.189 0.811 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.844 5.039 12.829 19.536 hybrid contribution 0.074 -0.259 -1.019 1.054 sum -13.770 4.781 11.809 18.760 Atomic orbital electron populations 1.22113 0.95291 1.01977 1.01823 1.21350 0.94320 0.83899 1.03152 1.52768 1.77762 1.20932 1.17791 1.19279 1.45452 0.94127 0.85397 0.88880 1.26122 0.95043 0.97233 1.02965 1.70125 1.35619 1.18545 1.29704 0.85254 0.79267 0.77875 0.77879 1.20989 1.20790 1.17490 1.06739 0.77986 0.74826 0.74662 1.93413 1.59679 1.64643 1.82715 1.93451 1.83040 1.53359 1.69058 1.31214 1.22758 1.15097 1.08559 1.22339 1.01324 0.89723 0.82954 0.85806 1.22163 0.92384 0.98778 1.04016 1.21696 0.99195 0.95815 0.99118 1.22338 0.93318 1.01701 1.01427 1.23343 0.91922 0.89462 0.97418 0.88155 1.20363 0.76326 0.80852 0.82034 1.93181 1.67016 1.60117 1.94965 1.93274 1.47471 1.87475 1.88219 1.93160 1.94693 1.78882 1.49298 1.88035 1.44080 1.37455 1.60334 0.92543 0.91102 0.92367 0.89581 0.93043 0.92562 0.82904 0.81138 0.87540 0.88913 0.90433 0.87378 0.87535 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.21 71.98 0.73 -4.32 16 2 C 0.10 4.44 5.99 86.38 0.52 4.96 16 3 N -0.86 -40.96 2.78 -343.44 -0.95 -41.91 16 4 C -0.31 -15.81 8.78 84.03 0.74 -15.07 16 5 H 0.09 4.53 7.94 -2.91 -0.02 4.50 16 6 C -0.01 -0.56 4.98 84.86 0.42 -0.14 16 7 N -0.90 -50.15 11.28 21.65 0.24 -49.91 16 8 Si 0.97 40.43 29.62 68.60 2.03 42.47 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 12 S 2.55 111.88 5.18 -56.49 -0.29 111.59 16 13 O -1.01 -53.04 17.22 -127.65 -2.20 -55.24 16 14 O -1.00 -47.92 15.28 -123.51 -1.89 -49.81 16 15 C -0.65 -17.67 4.99 71.98 0.36 -17.31 16 16 C 0.09 2.32 3.34 30.63 0.10 2.42 16 17 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 18 C -0.13 -1.99 5.64 30.69 0.17 -1.82 16 19 C -0.12 -1.52 5.72 30.71 0.18 -1.34 16 20 C -0.15 -2.43 5.17 30.69 0.16 -2.27 16 21 C 0.04 0.97 1.99 30.63 0.06 1.03 16 22 H 0.10 2.63 6.12 -2.39 -0.01 2.61 16 23 C 0.46 13.30 2.85 71.98 0.21 13.50 16 24 F -0.17 -4.38 16.85 44.97 0.76 -3.62 16 25 F -0.18 -6.83 17.20 44.97 0.77 -6.05 16 26 F -0.18 -4.97 16.70 44.97 0.75 -4.22 16 27 O -0.38 -11.30 9.19 -142.62 -1.31 -12.61 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.56 6.98 -2.39 -0.02 1.54 16 31 H 0.09 4.39 5.31 -2.39 -0.01 4.37 16 32 H 0.05 2.31 6.81 -2.39 -0.02 2.30 16 33 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 34 H 0.15 3.47 3.82 -2.39 -0.01 3.46 16 35 H 0.17 3.85 8.14 -2.39 -0.02 3.84 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 0.95 6.62 -2.39 -0.02 0.93 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 1.35 7.88 -2.39 -0.02 1.33 16 41 H 0.09 1.41 7.74 -2.38 -0.02 1.40 16 Total: -1.00 -73.75 346.76 2.63 -71.12 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.07 Total: 18.55 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.65 Total: -20.35 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -0.71 Total: -91.82 kcal Atomic # 8 Polarization: -112.25 SS G_CDS: -5.40 Total: -117.65 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 2.28 Total: -13.90 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 111.88 SS G_CDS: -0.29 Total: 111.59 kcal Total: -73.75 2.63 -71.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561170795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.679 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds