Wall clock time and date at job start Wed Apr 1 2020 03:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47463 * 2 1 4 4 C 1.36936 * 120.00215 * 278.12081 * 3 2 1 5 5 H 1.08002 * 119.99907 * 141.48851 * 4 3 2 6 6 C 1.38809 * 119.99864 * 321.48112 * 4 3 2 7 7 N 1.31622 * 120.00113 * 159.45757 * 6 4 3 8 8 Si 1.86803 * 120.00058 * 339.46281 * 6 4 3 9 9 H 1.48496 * 109.47028 * 95.30481 * 8 6 4 10 10 H 1.48506 * 109.46846 * 215.30102 * 8 6 4 11 11 H 1.48495 * 109.47066 * 335.30238 * 8 6 4 12 12 S 1.65608 * 120.00129 * 98.11700 * 3 2 1 13 13 O 1.42100 * 104.27322 * 333.93396 * 12 3 2 14 14 O 1.42100 * 104.27945 * 206.07731 * 12 3 2 15 15 C 1.81400 * 104.44898 * 90.00280 * 12 3 2 16 16 C 1.52999 * 109.46916 * 180.02562 * 15 12 3 17 17 H 1.08999 * 109.48330 * 59.99945 * 16 15 12 18 18 C 1.53095 * 109.47900 * 180.02562 * 16 15 12 19 19 C 1.53179 * 109.16077 * 177.57855 * 18 16 15 20 20 C 1.53168 * 109.04671 * 303.03604 * 19 18 16 21 21 C 1.53089 * 109.16668 * 56.97468 * 20 19 18 22 22 H 1.09002 * 109.48922 * 62.37726 * 21 20 19 23 23 C 1.53001 * 109.48493 * 182.40745 * 21 20 19 24 24 F 1.39905 * 109.47060 * 179.97438 * 23 21 20 25 25 F 1.39900 * 109.46880 * 299.94466 * 23 21 20 26 26 F 1.39900 * 109.46909 * 59.94598 * 23 21 20 27 27 O 1.42900 * 109.47901 * 299.97711 * 16 15 12 28 28 H 1.09005 * 109.46756 * 65.01117 * 1 2 3 29 29 H 1.08996 * 109.47347 * 185.01296 * 1 2 3 30 30 H 1.08998 * 109.46955 * 305.01756 * 1 2 3 31 31 H 1.09005 * 109.47290 * 240.00453 * 2 1 3 32 32 H 1.08998 * 109.47473 * 120.00084 * 2 1 3 33 33 H 0.96994 * 120.00613 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46922 * 300.00040 * 15 12 3 35 35 H 1.08991 * 109.47494 * 60.00099 * 15 12 3 36 36 H 1.09003 * 109.51966 * 297.49124 * 18 16 15 37 37 H 1.08998 * 109.52182 * 57.68173 * 18 16 15 38 38 H 1.09001 * 109.54215 * 183.16061 * 19 18 16 39 39 H 1.08999 * 109.60369 * 62.94967 * 19 18 16 40 40 H 1.08999 * 109.52386 * 297.06965 * 20 19 18 41 41 H 1.09002 * 109.57490 * 176.91585 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0887 2.0826 -1.1740 5 1 1.8329 3.1317 -1.1924 6 6 2.4889 1.4452 -2.3403 7 7 2.1837 1.9630 -3.5113 8 14 3.4605 -0.1476 -2.2481 9 1 2.5324 -1.3010 -2.3642 10 1 4.4458 -0.1914 -3.3584 11 1 4.1757 -0.2166 -0.9486 12 16 2.4853 2.0943 1.4198 13 8 1.7445 1.4058 2.4180 14 8 2.2940 3.4841 1.1935 15 6 4.2525 1.7096 1.5598 16 6 4.8071 2.3212 2.8479 17 1 4.2762 1.9070 3.7050 18 6 6.2987 1.9971 2.9660 19 6 6.8598 2.6633 4.2260 20 6 6.5960 4.1704 4.1543 21 6 5.0929 4.4104 3.9905 22 1 4.5657 4.0236 4.8626 23 6 4.8272 5.9113 3.8578 24 9 3.4536 6.1302 3.7075 25 9 5.2807 6.5685 5.0066 26 9 5.5043 6.4076 2.7386 27 8 4.6298 3.7388 2.8171 28 1 -0.3633 0.4342 -0.9315 29 1 -0.3634 -1.0237 0.0898 30 1 -0.3633 0.5897 0.8416 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.4630 1.5175 -4.3263 34 1 4.3881 0.6283 1.5837 35 1 4.7835 2.1235 0.7027 36 1 6.4326 0.9175 3.0341 37 1 6.8242 2.3757 2.0892 38 1 7.9331 2.4834 4.2865 39 1 6.3704 2.2490 5.1075 40 1 7.1274 4.5930 3.3016 41 1 6.9429 4.6460 5.0717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561170798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:45 Heat of formation + Delta-G solvation = -265.055883 kcal Electronic energy + Delta-G solvation = -30828.846655 eV Core-core repulsion = 26035.445939 eV Total energy + Delta-G solvation = -4793.400716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.03570 -47.59738 -47.42823 -39.74271 -36.35662 -35.74496 -34.52658 -33.96160 -33.36741 -32.37376 -29.55607 -28.93107 -26.22404 -24.59851 -23.28743 -22.48204 -22.30417 -20.69800 -18.54626 -18.32978 -18.21497 -17.84219 -17.03256 -16.59854 -16.50857 -15.79241 -15.63631 -15.47173 -14.82639 -14.39931 -14.31601 -14.27835 -13.91834 -13.69818 -13.65303 -13.59215 -13.47783 -13.39855 -13.13835 -13.02263 -12.78958 -12.50956 -12.33187 -12.10305 -11.59471 -11.56872 -11.29003 -11.15627 -11.08375 -11.00174 -10.77629 -10.75464 -10.67001 -10.51731 -10.21433 -10.05667 -9.93608 -9.41571 -9.06786 -8.16217 -6.72485 -4.16542 1.43425 2.43755 2.93651 3.05875 3.09268 3.29587 3.71778 3.87746 3.93815 3.95198 4.36084 4.47476 4.56919 4.64230 4.71262 4.73212 4.83413 5.01009 5.08117 5.18819 5.32141 5.39950 5.50366 5.61663 5.63887 5.71723 5.79583 5.88172 5.95111 6.04558 6.06401 6.25756 6.30939 6.61272 6.82797 6.89265 7.08049 7.36924 8.23633 8.81201 8.90898 10.33917 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.004101 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.686163 B = 6825.246181 C = 7030.622565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 N -0.831 5.831 4 C -0.247 4.247 5 H 0.124 0.876 6 C 0.063 3.937 7 N -0.824 5.824 8 Si 0.883 3.117 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.260 1.260 12 S 2.485 3.515 13 O -1.002 7.002 14 O -0.950 6.950 15 C -0.661 4.661 16 C 0.110 3.890 17 H 0.070 0.930 18 C -0.147 4.147 19 C -0.119 4.119 20 C -0.155 4.155 21 C 0.045 3.955 22 H 0.102 0.898 23 C 0.465 3.535 24 F -0.167 7.167 25 F -0.181 7.181 26 F -0.172 7.172 27 O -0.350 6.350 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.282 0.718 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.328 -1.574 12.252 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.010 4.010 3 N -0.656 5.656 4 C -0.395 4.395 5 H 0.141 0.859 6 C -0.152 4.152 7 N -0.460 5.460 8 Si 0.710 3.290 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.185 1.185 12 S 2.586 3.414 13 O -0.992 6.992 14 O -0.939 6.939 15 C -0.779 4.779 16 C 0.052 3.948 17 H 0.088 0.912 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.192 4.192 21 C -0.015 4.015 22 H 0.119 0.881 23 C 0.410 3.590 24 F -0.149 7.149 25 F -0.162 7.162 26 F -0.153 7.153 27 O -0.270 6.270 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.809 -0.963 12.796 15.565 hybrid contribution 1.397 -1.003 -0.225 1.735 sum 10.206 -1.966 12.571 16.311 Atomic orbital electron populations 1.22010 0.95581 1.00685 1.03202 1.21300 0.95525 0.83794 1.00396 1.53944 1.66304 1.21617 1.23728 1.19409 1.39319 0.98147 0.82623 0.85882 1.25856 0.95414 0.98791 0.95166 1.69827 1.38813 1.39432 0.97972 0.86829 0.80459 0.82908 0.78792 1.19409 1.21208 1.18453 1.13098 0.77206 0.76044 0.75069 1.93353 1.69136 1.75284 1.61435 1.93432 1.84264 1.32104 1.84117 1.31146 1.36234 1.07971 1.02503 1.21748 0.96245 0.79620 0.97183 0.91200 1.22258 0.95758 1.01670 0.98863 1.21589 1.02033 0.93610 0.98413 1.22252 0.93676 0.98802 1.04498 1.23113 0.97810 0.88229 0.92301 0.88077 1.20081 0.74968 0.90180 0.73743 1.93269 1.30633 1.95691 1.95268 1.93170 1.89185 1.83155 1.50708 1.93203 1.79902 1.89414 1.52820 1.88158 1.82257 1.19870 1.36694 0.91503 0.92965 0.92104 0.92837 0.91476 0.90786 0.85794 0.85288 0.90122 0.90189 0.90390 0.91251 0.89345 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.17 37.15 0.38 -2.54 16 2 C 0.12 2.34 5.05 -4.05 -0.02 2.32 16 3 N -0.83 -19.09 2.40 -59.91 -0.14 -19.23 16 4 C -0.25 -6.30 9.45 -15.06 -0.14 -6.44 16 5 H 0.12 3.48 7.54 -52.49 -0.40 3.09 16 6 C 0.06 1.56 5.35 -17.43 -0.09 1.46 16 7 N -0.82 -21.32 13.97 55.49 0.78 -20.54 16 8 Si 0.88 18.44 24.95 -169.99 -4.24 14.19 16 9 H -0.27 -5.32 6.72 56.52 0.38 -4.94 16 10 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 12 S 2.49 56.11 5.13 -107.50 -0.55 55.55 16 13 O -1.00 -23.41 16.92 -57.54 -0.97 -24.39 16 14 O -0.95 -24.92 16.24 -61.87 -1.01 -25.93 16 15 C -0.66 -11.91 5.90 37.16 0.22 -11.69 16 16 C 0.11 1.73 2.69 -26.68 -0.07 1.66 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.15 -1.75 5.42 -26.59 -0.14 -1.90 16 19 C -0.12 -1.11 6.03 -26.55 -0.16 -1.27 16 20 C -0.15 -1.60 5.17 -26.60 -0.14 -1.74 16 21 C 0.05 0.62 2.62 -26.68 -0.07 0.55 16 22 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 23 C 0.46 6.85 2.85 37.16 0.11 6.96 16 24 F -0.17 -2.93 17.26 2.25 0.04 -2.89 16 25 F -0.18 -2.26 16.85 2.25 0.04 -2.22 16 26 F -0.17 -2.74 16.70 2.25 0.04 -2.70 16 27 O -0.35 -6.20 8.98 -41.91 -0.38 -6.58 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.07 2.93 -51.93 -0.15 0.92 16 32 H 0.07 1.20 7.49 -51.93 -0.39 0.81 16 33 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 35 H 0.13 2.36 8.14 -51.93 -0.42 1.93 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.96 7.74 -51.93 -0.40 0.56 16 41 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -30.37 352.51 -6.78 -37.15 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.56 Total: 4.89 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.14 Total: -12.62 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.63 Total: -39.77 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.36 Total: -56.89 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.11 Total: -7.81 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.24 Total: 14.19 kcal Atomic # 16 Polarization: 56.11 SS G_CDS: -0.55 Total: 55.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.37 -6.78 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561170798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.907 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds