Wall clock time and date at job start Wed Apr 1 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35945 * 117.00242 * 2 1 4 4 C 1.38267 * 121.64389 * 180.26252 * 3 2 1 5 5 C 1.35051 * 114.72643 * 180.19999 * 4 3 2 6 6 C 1.50705 * 127.20185 * 179.84116 * 5 4 3 7 7 N 1.46899 * 109.46956 * 89.70771 * 6 5 4 8 8 C 1.46900 * 111.00145 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47228 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47080 * 294.99744 * 9 8 7 11 11 C 1.53000 * 109.47023 * 175.00420 * 9 8 7 12 12 N 1.46499 * 109.47455 * 55.00341 * 9 8 7 13 13 C 1.34777 * 120.00199 * 205.00257 * 12 9 8 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 9 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 9 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99909 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47104 * 90.00095 * 21 19 17 23 23 H 1.48502 * 109.46943 * 210.00235 * 21 19 17 24 24 H 1.48497 * 109.46910 * 330.00035 * 21 19 17 25 25 S 1.72022 * 105.60125 * 359.58359 * 5 4 3 26 26 N 1.30353 * 121.63921 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46904 * 299.99603 * 1 2 3 29 29 H 1.08992 * 109.47266 * 59.99546 * 1 2 3 30 30 H 1.08001 * 122.63132 * 0.02901 * 4 3 2 31 31 H 1.08998 * 109.46833 * 329.71435 * 6 5 4 32 32 H 1.08998 * 109.47537 * 209.71185 * 6 5 4 33 33 H 1.00904 * 111.00044 * 56.05019 * 7 6 5 34 34 H 1.08999 * 109.46910 * 60.00115 * 8 7 6 35 35 H 1.09000 * 109.47052 * 300.00872 * 8 7 6 36 36 H 1.08998 * 109.46925 * 299.99562 * 11 9 8 37 37 H 1.08998 * 109.47598 * 59.99967 * 11 9 8 38 38 H 1.09005 * 109.47473 * 179.97438 * 11 9 8 39 39 H 0.97000 * 119.99484 * 24.99354 * 12 9 8 40 40 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 41 41 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 42 42 H 0.97002 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 3.4244 1.3231 -0.0054 5 6 3.8882 2.5915 -0.0004 6 6 5.3285 3.0350 -0.0009 7 7 5.7961 3.1788 -1.3860 8 6 7.1993 3.6115 -1.4258 9 6 7.6491 3.7504 -2.8815 10 1 7.6356 2.7716 -3.3609 11 6 9.0687 4.3197 -2.9245 12 7 6.7391 4.6539 -3.5898 13 6 6.5986 4.5570 -4.9267 14 8 7.2260 3.7222 -5.5434 15 6 5.6671 5.4905 -5.6561 16 16 5.7040 5.1176 -7.4269 17 6 4.5595 6.3205 -8.0167 18 1 4.0826 6.9977 -7.3236 19 6 4.2716 6.3985 -9.3722 20 7 3.4170 7.2974 -9.8130 21 14 5.0982 5.2287 -10.5715 22 1 4.2701 4.0050 -10.7195 23 1 5.2406 5.8928 -11.8921 24 1 6.4407 4.8586 -10.0561 25 16 2.4910 3.5950 -0.0007 26 7 1.3679 2.3244 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 4.0784 0.4637 -0.0103 31 1 5.9378 2.2915 0.5129 32 1 5.4140 3.9926 0.5127 33 1 5.2071 3.8150 -1.9023 34 1 7.8219 2.8724 -0.9217 35 1 7.2973 4.5732 -0.9221 36 1 9.0822 5.2985 -2.4451 37 1 9.7459 3.6475 -2.3975 38 1 9.3894 4.4183 -3.9616 39 1 6.2375 5.3217 -3.0965 40 1 4.6529 5.3601 -5.2784 41 1 5.9852 6.5204 -5.4949 42 1 3.2156 7.3517 -10.7603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569046375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:42 Heat of formation + Delta-G solvation = -29.975319 kcal Electronic energy + Delta-G solvation = -24407.358267 eV Core-core repulsion = 20641.053772 eV Total energy + Delta-G solvation = -3766.304496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43389 -39.61650 -37.74809 -36.76875 -34.75287 -32.43257 -32.09435 -31.10664 -28.72700 -28.50437 -27.07399 -25.60552 -24.56051 -22.93818 -21.74119 -20.50732 -20.40423 -18.51298 -17.94797 -17.63229 -16.79518 -16.51684 -16.34068 -15.90292 -15.53496 -15.15648 -14.97791 -14.86364 -14.33533 -14.00224 -13.96068 -13.72486 -13.38765 -13.18264 -12.92770 -12.78732 -12.73968 -12.45224 -12.25105 -12.10950 -11.81363 -11.42296 -11.31396 -11.25660 -11.14029 -11.01734 -10.99793 -10.58781 -9.93843 -9.84906 -9.50082 -9.06417 -8.98712 -8.92092 -8.61834 -8.49037 -6.90574 -6.28129 -3.99652 0.31511 1.03560 1.39436 2.14594 2.76565 2.81232 2.98614 3.29541 3.34849 3.51318 3.62621 3.73331 4.17384 4.33998 4.47379 4.62918 4.68002 4.75837 4.83217 4.86854 4.92209 5.00815 5.10988 5.14732 5.19721 5.27270 5.29744 5.33332 5.35254 5.44683 5.55755 5.76829 5.85771 5.95447 6.01279 6.06196 6.42238 6.56018 6.76048 6.82040 7.57663 7.94924 8.42372 8.50174 9.18182 10.81127 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.002528 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.980972 B =11071.748027 C =13029.820675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.311 3.689 4 C -0.185 4.185 5 C -0.152 4.152 6 C 0.134 3.866 7 N -0.682 5.682 8 C 0.053 3.947 9 C 0.145 3.855 10 H 0.097 0.903 11 C -0.163 4.163 12 N -0.734 5.734 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 S 0.289 5.711 26 N -0.528 5.528 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.348 0.652 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -9.346 27.121 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.097 3.903 4 C -0.221 4.221 5 C -0.282 4.282 6 C 0.003 3.997 7 N -0.315 5.315 8 C -0.076 4.076 9 C 0.040 3.960 10 H 0.116 0.884 11 C -0.222 4.222 12 N -0.388 5.388 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.276 4.276 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 S 0.439 5.561 26 N -0.368 5.368 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.183 0.817 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.168 0.832 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.227 0.773 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.446 -10.011 25.865 27.842 hybrid contribution -0.264 0.414 0.501 0.701 sum 2.182 -9.597 26.366 28.143 Atomic orbital electron populations 1.22986 0.76707 1.03624 1.02607 1.86286 1.22990 1.22646 1.88185 1.20172 0.90130 0.85145 0.94885 1.20191 0.92457 0.99148 1.10330 1.25193 1.02185 0.97577 1.03214 1.20325 0.87502 1.00805 0.91026 1.60405 1.03538 1.55945 1.11647 1.22323 0.89261 0.99592 0.96430 1.20940 0.88967 0.95310 0.90815 0.88448 1.22163 0.95767 1.00932 1.03349 1.46022 1.46869 1.38281 1.07673 1.20231 0.82081 0.84115 0.81540 1.90700 1.46019 1.35916 1.66344 1.23288 1.01377 1.01477 1.01429 1.84794 1.59784 1.49638 0.97243 1.22318 1.28015 1.19833 0.96691 0.89412 1.24714 0.94078 0.95038 0.97493 1.69939 1.32754 1.33558 1.15506 0.86737 0.82597 0.81408 0.81125 1.19199 1.19970 1.15907 1.84036 0.89808 1.12954 1.69339 1.76519 1.26315 1.01235 1.32776 0.88012 0.92234 0.91980 0.81736 0.88291 0.92932 0.83244 0.89141 0.94245 0.92569 0.91701 0.91339 0.77261 0.88558 0.88564 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.47 101.05 1.06 1.34 16 2 O -0.30 -3.09 10.54 -19.57 -0.21 -3.30 16 3 C 0.31 3.43 7.42 -18.17 -0.13 3.29 16 4 C -0.18 -1.73 10.15 -40.70 -0.41 -2.14 16 5 C -0.15 -1.25 6.10 -35.44 -0.22 -1.47 16 6 C 0.13 0.82 6.26 -4.97 -0.03 0.78 16 7 N -0.68 -5.29 6.48 -115.06 -0.75 -6.04 16 8 C 0.05 0.35 5.30 -3.83 -0.02 0.33 16 9 C 0.14 1.43 2.88 -67.93 -0.20 1.24 16 10 H 0.10 1.23 7.58 -51.93 -0.39 0.84 16 11 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 12 N -0.73 -8.44 4.36 -53.81 -0.23 -8.68 16 13 C 0.53 9.08 7.81 -10.98 -0.09 8.99 16 14 O -0.52 -10.82 15.53 5.55 0.09 -10.73 16 15 C -0.13 -2.36 6.16 36.01 0.22 -2.14 16 16 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 17 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 21 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 S 0.29 2.67 23.71 -107.50 -2.55 0.12 16 26 N -0.53 -6.16 11.14 28.92 0.32 -5.84 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.35 2.91 7.57 -39.29 -0.30 2.62 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.39 3.42 8.15 -40.82 -0.33 3.09 16 40 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 41 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -35.47 385.91 -8.79 -44.27 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.10 Total: 1.59 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.75 Total: -2.91 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.12 Total: -46.45 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.12 Total: -14.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -4.54 Total: -5.43 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.47 -8.79 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569046375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.290 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds