Wall clock time and date at job start Wed Apr 1 2020 03:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35945 * 117.00242 * 2 1 4 4 C 1.38267 * 121.64389 * 180.26252 * 3 2 1 5 5 C 1.35051 * 114.72643 * 180.19999 * 4 3 2 6 6 C 1.50705 * 127.20185 * 179.84116 * 5 4 3 7 7 N 1.46899 * 109.46956 * 89.70771 * 6 5 4 8 8 C 1.46900 * 111.00145 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47228 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47080 * 294.99744 * 9 8 7 11 11 C 1.53000 * 109.47023 * 175.00420 * 9 8 7 12 12 N 1.46499 * 109.47455 * 55.00341 * 9 8 7 13 13 C 1.34777 * 120.00199 * 205.00257 * 12 9 8 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 9 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 9 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99909 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47104 * 90.00095 * 21 19 17 23 23 H 1.48502 * 109.46943 * 210.00235 * 21 19 17 24 24 H 1.48497 * 109.46910 * 330.00035 * 21 19 17 25 25 S 1.72022 * 105.60125 * 359.58359 * 5 4 3 26 26 N 1.30353 * 121.63921 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46904 * 299.99603 * 1 2 3 29 29 H 1.08992 * 109.47266 * 59.99546 * 1 2 3 30 30 H 1.08001 * 122.63132 * 0.02901 * 4 3 2 31 31 H 1.08998 * 109.46833 * 329.71435 * 6 5 4 32 32 H 1.08998 * 109.47537 * 209.71185 * 6 5 4 33 33 H 1.00904 * 111.00044 * 56.05019 * 7 6 5 34 34 H 1.08999 * 109.46910 * 60.00115 * 8 7 6 35 35 H 1.09000 * 109.47052 * 300.00872 * 8 7 6 36 36 H 1.08998 * 109.46925 * 299.99562 * 11 9 8 37 37 H 1.08998 * 109.47598 * 59.99967 * 11 9 8 38 38 H 1.09005 * 109.47473 * 179.97438 * 11 9 8 39 39 H 0.97000 * 119.99484 * 24.99354 * 12 9 8 40 40 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 41 41 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 42 42 H 0.97002 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 3.4244 1.3231 -0.0054 5 6 3.8882 2.5915 -0.0004 6 6 5.3285 3.0350 -0.0009 7 7 5.7961 3.1788 -1.3860 8 6 7.1993 3.6115 -1.4258 9 6 7.6491 3.7504 -2.8815 10 1 7.6356 2.7716 -3.3609 11 6 9.0687 4.3197 -2.9245 12 7 6.7391 4.6539 -3.5898 13 6 6.5986 4.5570 -4.9267 14 8 7.2260 3.7222 -5.5434 15 6 5.6671 5.4905 -5.6561 16 16 5.7040 5.1176 -7.4269 17 6 4.5595 6.3205 -8.0167 18 1 4.0826 6.9977 -7.3236 19 6 4.2716 6.3985 -9.3722 20 7 3.4170 7.2974 -9.8130 21 14 5.0982 5.2287 -10.5715 22 1 4.2701 4.0050 -10.7195 23 1 5.2406 5.8928 -11.8921 24 1 6.4407 4.8586 -10.0561 25 16 2.4910 3.5950 -0.0007 26 7 1.3679 2.3244 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 4.0784 0.4637 -0.0103 31 1 5.9378 2.2915 0.5129 32 1 5.4140 3.9926 0.5127 33 1 5.2071 3.8150 -1.9023 34 1 7.8219 2.8724 -0.9217 35 1 7.2973 4.5732 -0.9221 36 1 9.0822 5.2985 -2.4451 37 1 9.7459 3.6475 -2.3975 38 1 9.3894 4.4183 -3.9616 39 1 6.2375 5.3217 -3.0965 40 1 4.6529 5.3601 -5.2784 41 1 5.9852 6.5204 -5.4949 42 1 3.2156 7.3517 -10.7603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569046375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:41 Heat of formation + Delta-G solvation = -58.828679 kcal Electronic energy + Delta-G solvation = -24408.609443 eV Core-core repulsion = 20641.053772 eV Total energy + Delta-G solvation = -3767.555671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15759 -40.80926 -38.49064 -37.58416 -35.61455 -34.67074 -33.07073 -31.98669 -30.02742 -29.17556 -27.84694 -27.67862 -25.21105 -23.56333 -22.70110 -21.51246 -21.20776 -19.91397 -19.19577 -18.39692 -18.03618 -17.39236 -17.23714 -17.07425 -16.71467 -16.48012 -15.94923 -15.83864 -15.74889 -15.04270 -14.87086 -14.79645 -14.51389 -14.42764 -13.99618 -13.87067 -13.45020 -13.34717 -13.22235 -13.02150 -12.99385 -12.83667 -12.77682 -12.54342 -12.11738 -11.97119 -11.89250 -11.84205 -11.76262 -11.17205 -10.92775 -10.65503 -10.52231 -10.11131 -9.46174 -9.32189 -8.98458 -8.51602 -6.21727 -0.38104 0.35052 0.67467 1.00315 1.31241 1.40349 1.47003 1.56916 1.62954 2.15609 2.23744 2.28827 2.72956 2.86786 3.13135 3.57994 3.82637 3.95274 4.02197 4.14879 4.23004 4.26877 4.28141 4.29795 4.39090 4.48400 4.59147 4.65007 4.70249 4.76114 4.77838 4.82520 4.84546 5.12838 5.13910 5.32691 5.56496 5.70823 5.91918 6.03602 6.11551 6.23914 6.50384 6.93919 7.26093 8.60850 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.002528 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.980972 B =11071.748027 C =13029.820675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.298 3.702 4 C -0.201 4.201 5 C -0.136 4.136 6 C 0.136 3.864 7 N -0.700 5.700 8 C 0.064 3.936 9 C 0.143 3.857 10 H 0.068 0.932 11 C -0.158 4.158 12 N -0.708 5.708 13 C 0.539 3.461 14 O -0.561 6.561 15 C -0.112 4.112 16 S -0.177 6.177 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.259 1.259 24 H -0.236 1.236 25 S 0.294 5.706 26 N -0.563 5.563 27 H 0.129 0.871 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.177 0.823 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.342 0.658 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.412 0.588 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -9.724 29.236 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.214 6.214 3 C 0.085 3.915 4 C -0.237 4.237 5 C -0.266 4.266 6 C 0.006 3.994 7 N -0.333 5.333 8 C -0.065 4.065 9 C 0.039 3.961 10 H 0.086 0.914 11 C -0.217 4.217 12 N -0.362 5.362 13 C 0.324 3.676 14 O -0.439 6.439 15 C -0.263 4.263 16 S 0.049 5.951 17 C -0.675 4.675 18 H 0.080 0.920 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.160 1.160 25 S 0.443 5.557 26 N -0.404 5.404 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.984 -10.370 28.042 30.163 hybrid contribution -0.756 0.569 0.026 0.947 sum 3.228 -9.801 28.069 29.905 Atomic orbital electron populations 1.23150 0.75622 1.05272 1.02084 1.86267 1.24195 1.22761 1.88166 1.20525 0.90913 0.85189 0.94922 1.20393 0.91992 1.00159 1.11166 1.25505 1.02949 0.96742 1.01367 1.20484 0.85974 1.02506 0.90450 1.60388 1.04028 1.56266 1.12663 1.22276 0.88783 1.01631 0.93788 1.21097 0.89228 0.93363 0.92448 0.91382 1.22109 0.95393 1.02525 1.01647 1.45793 1.46328 1.38297 1.05743 1.19861 0.81403 0.83209 0.83135 1.90691 1.47828 1.37701 1.67686 1.23289 1.03163 1.03053 0.96826 1.84726 1.58631 1.48737 1.02959 1.22468 1.28357 1.20027 0.96636 0.91959 1.25565 0.94690 0.96539 0.99250 1.70016 1.34137 1.35132 1.16329 0.85874 0.81519 0.79531 0.79493 1.18845 1.18336 1.15990 1.83920 0.90116 1.12378 1.69305 1.76418 1.27948 1.02070 1.33963 0.85291 0.92209 0.93027 0.80567 0.86467 0.90583 0.83894 0.87218 0.91614 0.90750 0.89416 0.94798 0.75156 0.87107 0.86869 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.47 113.37 1.19 1.70 16 2 O -0.31 -6.43 10.54 -92.93 -0.98 -7.41 16 3 C 0.30 6.51 7.42 84.92 0.63 7.14 16 4 C -0.20 -3.53 10.15 21.54 0.22 -3.31 16 5 C -0.14 -1.94 6.10 24.95 0.15 -1.79 16 6 C 0.14 1.14 6.26 85.56 0.54 1.68 16 7 N -0.70 -8.49 6.48 -517.94 -3.36 -11.84 16 8 C 0.06 0.58 5.30 86.30 0.46 1.04 16 9 C 0.14 2.47 2.88 44.99 0.13 2.60 16 10 H 0.07 1.64 7.58 -2.38 -0.02 1.62 16 11 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 12 N -0.71 -14.63 4.36 -442.53 -1.93 -16.56 16 13 C 0.54 17.70 7.81 87.66 0.68 18.39 16 14 O -0.56 -23.49 15.53 -3.04 -0.05 -23.54 16 15 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16 16 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 17 C -0.53 -30.78 10.04 67.95 0.68 -30.10 16 18 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 19 C 0.04 2.65 5.50 84.86 0.47 3.11 16 20 N -0.92 -56.28 13.97 21.65 0.30 -55.97 16 21 Si 0.91 45.39 27.74 68.60 1.90 47.30 16 22 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 25 S 0.29 5.09 23.71 -56.49 -1.34 3.76 16 26 N -0.56 -13.13 11.14 -176.08 -1.96 -15.09 16 27 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.34 4.69 7.57 -89.69 -0.68 4.01 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.41 5.77 8.15 -92.71 -0.76 5.02 16 40 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 41 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 42 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -79.49 385.91 -2.61 -82.10 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.42 Total: 12.30 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 6.26 Total: -5.05 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -6.94 Total: -99.47 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.03 Total: -30.94 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.39 Total: -6.24 kcal Total: -79.49 -2.61 -82.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569046375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds