Wall clock time and date at job start Wed Apr 1 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47112 * 202.51154 * 3 2 1 5 5 C 1.37096 * 119.99731 * 263.92701 * 4 3 2 6 6 H 1.07998 * 120.00052 * 199.75102 * 5 4 3 7 7 C 1.38950 * 120.00329 * 19.74922 * 5 4 3 8 8 N 1.31411 * 119.99809 * 21.75023 * 7 5 4 9 9 Si 1.86796 * 120.00236 * 201.74931 * 7 5 4 10 10 H 1.48497 * 109.47234 * 89.99957 * 9 7 5 11 11 H 1.48500 * 109.47386 * 210.00255 * 9 7 5 12 12 H 1.48504 * 109.47307 * 329.99771 * 9 7 5 13 13 C 1.34770 * 120.00145 * 83.92709 * 4 3 2 14 14 O 1.21291 * 120.00150 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00380 * 359.97438 * 13 4 3 16 16 N 1.46493 * 109.47604 * 179.97438 * 15 13 4 17 17 C 1.35992 * 119.79626 * 269.98261 * 16 15 13 18 18 C 1.36667 * 119.12294 * 179.69286 * 17 16 15 19 19 C 1.48414 * 120.62337 * 180.29044 * 18 17 16 20 20 N 1.34063 * 126.67761 * 359.97438 * 19 18 17 21 21 N 1.28977 * 107.26619 * 179.83203 * 20 19 18 22 22 N 1.28728 * 108.95461 * 0.43401 * 21 20 19 23 23 H 0.97000 * 125.34664 * 179.72447 * 22 21 20 24 24 N 1.28882 * 109.31725 * 359.72489 * 22 21 20 25 25 C 1.41682 * 118.75581 * 0.58802 * 18 17 16 26 26 O 1.35107 * 120.23094 * 179.70204 * 25 18 17 27 27 N 1.32286 * 119.53037 * 359.42764 * 25 18 17 28 28 C 1.33298 * 120.85447 * 0.27652 * 27 25 18 29 29 O 1.21967 * 119.33622 * 180.02562 * 28 27 25 30 30 H 4.40639 * 5.51428 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47121 * 82.50639 * 3 2 1 32 32 H 1.09007 * 109.46959 * 322.50951 * 3 2 1 33 33 H 0.96998 * 119.99979 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46381 * 59.99849 * 15 13 4 35 35 H 1.08997 * 109.47082 * 300.00819 * 15 13 4 36 36 H 1.08001 * 120.44281 * 0.02562 * 17 16 15 37 37 H 0.96701 * 113.99581 * 179.72598 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2768 0.5288 5 6 3.4802 2.2873 -0.3305 6 1 4.1230 3.0867 0.0072 7 6 3.0043 2.2830 -1.6360 8 7 1.9237 1.5995 -1.9391 9 14 3.9007 3.2487 -2.9601 10 1 4.9271 2.3833 -3.5947 11 1 2.9284 3.6990 -3.9882 12 1 4.5592 4.4316 -2.3499 13 6 3.2419 1.4575 1.8600 14 8 3.6452 2.5142 2.2978 15 6 2.8605 0.3469 2.8046 16 7 3.0672 0.7882 4.1861 17 6 4.2688 0.5820 4.7887 18 6 4.4486 1.0050 6.0758 19 6 5.7483 0.8028 6.7634 20 7 6.8422 0.2199 6.2527 21 7 7.7520 0.2463 7.1666 22 7 7.2707 0.8087 8.2197 23 1 7.7513 0.9489 9.0505 24 7 6.0497 1.1564 7.9971 25 6 3.3691 1.6343 6.7436 26 8 3.5123 2.0586 8.0183 27 7 2.2219 1.8085 6.1084 28 6 2.0672 1.3946 4.8507 29 8 0.9976 1.5698 4.2913 30 1 -1.0502 -0.0003 -0.0003 31 1 3.0094 -0.1332 -1.0189 32 1 3.0097 -0.8146 0.6255 33 1 1.5917 1.5962 -2.8505 34 1 3.4803 -0.5276 2.6063 35 1 1.8115 0.0894 2.6581 36 1 5.0720 0.0953 4.2555 37 1 2.7217 2.4784 8.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:47 Heat of formation + Delta-G solvation = 150.184328 kcal Electronic energy + Delta-G solvation = -29586.552644 eV Core-core repulsion = 25178.616042 eV Total energy + Delta-G solvation = -4407.936602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.53919 -41.77982 -39.11394 -38.34411 -36.74838 -35.41421 -34.59437 -34.32740 -33.62062 -32.23570 -31.33612 -30.83297 -28.32376 -26.49715 -25.46150 -24.75353 -24.56670 -23.82489 -22.33090 -19.92463 -19.71649 -19.22680 -18.12593 -17.98445 -17.32678 -17.13703 -16.84991 -16.54269 -15.80359 -15.73141 -15.10092 -14.75428 -14.47460 -14.21783 -14.12582 -14.03985 -13.89077 -13.53791 -12.98028 -12.80728 -12.45983 -12.40188 -12.16574 -11.80888 -11.65209 -11.44792 -11.20975 -11.08278 -10.96738 -10.76261 -10.56138 -10.41466 -10.12036 -9.84161 -9.43509 -9.35653 -9.00951 -8.79472 -8.29566 -7.99893 -6.42910 -3.98567 0.53771 0.94947 1.25025 2.05192 2.38354 2.41692 3.04496 3.07795 3.21467 3.25667 3.47363 3.51460 3.77431 3.85094 3.97295 4.01602 4.11811 4.18568 4.54549 4.72303 4.87060 4.97289 5.09474 5.18129 5.31382 5.35559 5.45061 5.48292 5.63104 5.97979 6.11707 6.24833 6.34152 6.57850 6.96363 7.00318 7.47505 7.80858 7.87772 8.04034 8.22324 8.27501 8.77154 8.97634 9.18513 9.68299 10.56892 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003146 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.036700 B = 8898.405381 C = 9888.564402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.130 4.130 3 C 0.230 3.770 4 N -0.426 5.426 5 C -0.319 4.319 6 H 0.106 0.894 7 C 0.036 3.964 8 N -0.853 5.853 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.433 3.567 14 O -0.572 6.572 15 C 0.075 3.925 16 N -0.490 5.490 17 C 0.277 3.723 18 C -0.198 4.198 19 C 0.251 3.749 20 N -0.276 5.276 21 N -0.051 5.051 22 N -0.232 5.232 23 H 0.474 0.526 24 N -0.276 5.276 25 C 0.482 3.518 26 O -0.431 6.431 27 N -0.606 5.606 28 C 0.660 3.340 29 O -0.510 6.510 30 H 0.200 0.800 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.270 0.730 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.193 0.807 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -7.919 16.289 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.131 4.131 3 C 0.107 3.893 4 N -0.144 5.144 5 C -0.446 4.446 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.490 5.490 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.220 3.780 14 O -0.455 6.455 15 C -0.050 4.050 16 N -0.201 5.201 17 C 0.133 3.867 18 C -0.212 4.212 19 C -0.030 4.030 20 N -0.150 5.150 21 N -0.046 5.046 22 N -0.078 5.078 23 H 0.328 0.672 24 N -0.128 5.128 25 C 0.278 3.722 26 O -0.224 6.224 27 N -0.363 5.363 28 C 0.361 3.639 29 O -0.381 6.381 30 H 0.217 0.783 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.210 0.790 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 7.583 -7.332 16.151 19.290 hybrid contribution -0.032 0.699 -0.532 0.879 sum 7.551 -6.633 15.619 18.573 Atomic orbital electron populations 1.24330 0.95434 1.02157 1.03991 1.22994 0.94258 0.98373 0.97492 1.18280 0.84597 0.85111 1.01314 1.43649 1.54975 1.12412 1.03371 1.19668 1.28638 1.05569 0.90773 0.87652 1.25346 0.94827 0.97850 0.98997 1.70096 1.17471 1.41091 1.20322 0.85966 0.79111 0.79907 0.80015 1.20150 1.21005 1.19334 1.19851 0.86178 0.88709 0.83270 1.90589 1.51214 1.27716 1.76010 1.22113 1.06511 0.98342 0.78073 1.46147 1.11443 1.47779 1.14762 1.22378 0.87967 0.86106 0.90294 1.16101 0.90874 1.19424 0.94796 1.22649 0.94374 0.97983 0.88015 1.76064 0.97987 1.19100 1.21825 1.78859 1.21763 1.12537 0.91446 1.47770 1.07582 1.37327 1.15104 0.67183 1.75145 0.97844 1.21853 1.17935 1.20055 0.87318 0.80823 0.84040 1.85110 1.43096 1.72214 1.21934 1.69729 1.22634 1.33823 1.10140 1.17296 0.84295 0.78874 0.83407 1.91050 1.24527 1.56350 1.66197 0.78285 0.87137 0.91887 0.91897 0.86883 0.85491 0.79002 0.72989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.94 19.25 29.55 0.57 -4.37 16 2 C -0.13 -2.79 10.75 -37.12 -0.40 -3.19 16 3 C 0.23 4.65 4.91 -6.83 -0.03 4.62 16 4 N -0.43 -10.13 2.60 -117.94 -0.31 -10.43 16 5 C -0.32 -8.45 9.28 -14.93 -0.14 -8.59 16 6 H 0.11 2.96 7.42 -52.49 -0.39 2.57 16 7 C 0.04 0.90 4.83 -17.47 -0.08 0.81 16 8 N -0.85 -21.71 9.59 55.50 0.53 -21.18 16 9 Si 0.92 19.88 29.60 -169.99 -5.03 14.84 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.43 9.94 7.63 -10.99 -0.08 9.85 16 14 O -0.57 -15.34 16.10 5.55 0.09 -15.25 16 15 C 0.08 1.29 4.42 -5.20 -0.02 1.27 16 16 N -0.49 -8.26 2.08 -122.90 -0.26 -8.52 16 17 C 0.28 3.69 10.06 -16.28 -0.16 3.53 16 18 C -0.20 -2.63 5.87 -104.96 -0.62 -3.24 16 19 C 0.25 3.10 7.93 -156.29 -1.24 1.86 16 20 N -0.28 -3.40 12.25 32.15 0.39 -3.01 16 21 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 22 N -0.23 -1.81 7.90 60.35 0.48 -1.33 16 23 H 0.47 1.33 8.96 -340.36 -3.05 -1.72 16 24 N -0.28 -2.95 11.04 32.17 0.36 -2.60 16 25 C 0.48 6.57 7.92 -16.04 -0.13 6.44 16 26 O -0.43 -4.40 12.05 -17.02 -0.21 -4.61 16 27 N -0.61 -10.36 10.39 -16.52 -0.17 -10.54 16 28 C 0.66 13.08 8.33 -88.46 -0.74 12.35 16 29 O -0.51 -12.17 16.70 4.95 0.08 -12.09 16 30 H 0.20 3.42 7.80 -54.08 -0.42 3.00 16 31 H 0.11 2.34 6.60 -51.93 -0.34 2.00 16 32 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.11 1.33 7.30 -51.93 -0.38 0.96 16 35 H 0.13 2.31 6.72 -51.93 -0.35 1.96 16 36 H 0.19 1.96 7.90 -52.49 -0.41 1.54 16 37 H 0.41 2.59 8.98 45.56 0.41 3.00 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -38.76 342.95 -5.56 -44.32 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.42 Total: 3.60 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: -3.08 Total: 21.34 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 1.84 Total: -57.32 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.03 Total: -31.95 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.76 -5.56 -44.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.500 kcal (2) G-P(sol) polarization free energy of solvation -38.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds