Wall clock time and date at job start Wed Apr 1 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47112 * 202.51154 * 3 2 1 5 5 C 1.37096 * 119.99731 * 263.92701 * 4 3 2 6 6 H 1.07998 * 120.00052 * 199.75102 * 5 4 3 7 7 C 1.38950 * 120.00329 * 19.74922 * 5 4 3 8 8 N 1.31411 * 119.99809 * 21.75023 * 7 5 4 9 9 Si 1.86796 * 120.00236 * 201.74931 * 7 5 4 10 10 H 1.48497 * 109.47234 * 89.99957 * 9 7 5 11 11 H 1.48500 * 109.47386 * 210.00255 * 9 7 5 12 12 H 1.48504 * 109.47307 * 329.99771 * 9 7 5 13 13 C 1.34770 * 120.00145 * 83.92709 * 4 3 2 14 14 O 1.21291 * 120.00150 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00380 * 359.97438 * 13 4 3 16 16 N 1.46493 * 109.47604 * 179.97438 * 15 13 4 17 17 C 1.35992 * 119.79626 * 269.98261 * 16 15 13 18 18 C 1.36667 * 119.12294 * 179.69286 * 17 16 15 19 19 C 1.48414 * 120.62337 * 180.29044 * 18 17 16 20 20 N 1.34063 * 126.67761 * 359.97438 * 19 18 17 21 21 N 1.28977 * 107.26619 * 179.83203 * 20 19 18 22 22 N 1.28728 * 108.95461 * 0.43401 * 21 20 19 23 23 H 0.97000 * 125.34664 * 179.72447 * 22 21 20 24 24 N 1.28882 * 109.31725 * 359.72489 * 22 21 20 25 25 C 1.41682 * 118.75581 * 0.58802 * 18 17 16 26 26 O 1.35107 * 120.23094 * 179.70204 * 25 18 17 27 27 N 1.32286 * 119.53037 * 359.42764 * 25 18 17 28 28 C 1.33298 * 120.85447 * 0.27652 * 27 25 18 29 29 O 1.21967 * 119.33622 * 180.02562 * 28 27 25 30 30 H 4.40639 * 5.51428 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47121 * 82.50639 * 3 2 1 32 32 H 1.09007 * 109.46959 * 322.50951 * 3 2 1 33 33 H 0.96998 * 119.99979 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46381 * 59.99849 * 15 13 4 35 35 H 1.08997 * 109.47082 * 300.00819 * 15 13 4 36 36 H 1.08001 * 120.44281 * 0.02562 * 17 16 15 37 37 H 0.96701 * 113.99581 * 179.72598 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2768 0.5288 5 6 3.4802 2.2873 -0.3305 6 1 4.1230 3.0867 0.0072 7 6 3.0043 2.2830 -1.6360 8 7 1.9237 1.5995 -1.9391 9 14 3.9007 3.2487 -2.9601 10 1 4.9271 2.3833 -3.5947 11 1 2.9284 3.6990 -3.9882 12 1 4.5592 4.4316 -2.3499 13 6 3.2419 1.4575 1.8600 14 8 3.6452 2.5142 2.2978 15 6 2.8605 0.3469 2.8046 16 7 3.0672 0.7882 4.1861 17 6 4.2688 0.5820 4.7887 18 6 4.4486 1.0050 6.0758 19 6 5.7483 0.8028 6.7634 20 7 6.8422 0.2199 6.2527 21 7 7.7520 0.2463 7.1666 22 7 7.2707 0.8087 8.2197 23 1 7.7513 0.9489 9.0505 24 7 6.0497 1.1564 7.9971 25 6 3.3691 1.6343 6.7436 26 8 3.5123 2.0586 8.0183 27 7 2.2219 1.8085 6.1084 28 6 2.0672 1.3946 4.8507 29 8 0.9976 1.5698 4.2913 30 1 -1.0502 -0.0003 -0.0003 31 1 3.0094 -0.1332 -1.0189 32 1 3.0097 -0.8146 0.6255 33 1 1.5917 1.5962 -2.8505 34 1 3.4803 -0.5276 2.6063 35 1 1.8115 0.0894 2.6581 36 1 5.0720 0.0953 4.2555 37 1 2.7217 2.4784 8.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588350392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:46 Heat of formation + Delta-G solvation = 115.915076 kcal Electronic energy + Delta-G solvation = -29588.038670 eV Core-core repulsion = 25178.616042 eV Total energy + Delta-G solvation = -4409.422628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.38062 -43.05197 -40.60429 -39.68502 -38.09527 -37.14260 -35.75075 -35.36688 -34.58465 -34.04545 -33.05600 -31.93827 -29.76925 -28.14101 -26.66824 -26.18587 -25.73926 -24.86767 -23.48051 -21.34731 -20.95129 -20.14682 -19.73988 -19.21730 -18.72859 -18.33984 -18.09442 -18.00462 -17.21554 -17.10056 -16.48966 -16.25202 -16.08810 -15.68735 -15.26840 -15.13091 -15.03086 -14.74869 -14.54640 -14.43184 -13.99088 -13.56297 -13.38222 -13.34721 -13.23809 -12.78289 -12.47636 -12.32959 -12.18024 -12.17451 -12.07840 -12.01371 -11.29628 -11.19439 -11.17715 -11.07778 -10.68935 -10.45498 -9.86679 -9.59841 -8.33147 -5.96467 -0.53999 -0.04357 0.28304 1.02720 1.35387 1.35986 1.44547 1.53686 1.55921 1.78045 2.03592 2.12249 2.32769 2.39043 2.54558 2.57480 2.97989 3.03284 3.08253 3.13127 3.53123 3.75514 3.86001 3.94634 4.02960 4.19953 4.20757 4.33665 4.56614 4.65435 4.85199 4.95647 5.09496 5.42512 5.47340 5.70934 6.00544 6.11978 6.37780 6.54490 6.90174 7.09571 7.16201 7.19176 7.34361 7.86626 8.64358 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003146 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.036700 B = 8898.405381 C = 9888.564402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.157 4.157 3 C 0.229 3.771 4 N -0.438 5.438 5 C -0.353 4.353 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.866 5.866 9 Si 0.983 3.017 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.426 3.574 14 O -0.622 6.622 15 C 0.088 3.912 16 N -0.495 5.495 17 C 0.276 3.724 18 C -0.192 4.192 19 C 0.237 3.763 20 N -0.291 5.291 21 N -0.053 5.053 22 N -0.201 5.201 23 H 0.495 0.505 24 N -0.275 5.275 25 C 0.492 3.508 26 O -0.416 6.416 27 N -0.630 5.630 28 C 0.653 3.347 29 O -0.571 6.571 30 H 0.225 0.775 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.273 0.727 34 H 0.175 0.825 35 H 0.118 0.882 36 H 0.226 0.774 37 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -9.366 17.442 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.158 4.158 3 C 0.107 3.893 4 N -0.155 5.155 5 C -0.480 4.480 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.502 5.502 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.215 3.785 14 O -0.508 6.508 15 C -0.038 4.038 16 N -0.206 5.206 17 C 0.134 3.866 18 C -0.204 4.204 19 C -0.044 4.044 20 N -0.164 5.164 21 N -0.048 5.048 22 N -0.052 5.052 23 H 0.354 0.646 24 N -0.128 5.128 25 C 0.290 3.710 26 O -0.211 6.211 27 N -0.389 5.389 28 C 0.355 3.645 29 O -0.448 6.448 30 H 0.241 0.759 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.192 0.808 35 H 0.136 0.864 36 H 0.243 0.757 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 9.355 -8.821 17.372 21.612 hybrid contribution -0.454 1.200 -0.637 1.432 sum 8.901 -7.622 16.735 20.429 Atomic orbital electron populations 1.25111 0.96503 1.01403 1.03398 1.23489 0.95161 0.99059 0.98107 1.18515 0.84074 0.84994 1.01756 1.43826 1.54964 1.13067 1.03685 1.19535 1.29764 1.06473 0.92266 0.90688 1.25975 0.95123 0.98610 1.00008 1.70185 1.17790 1.41583 1.20669 0.85091 0.78262 0.78449 0.77440 1.18258 1.20772 1.20584 1.20778 0.84485 0.89577 0.83686 1.90545 1.53084 1.30224 1.76994 1.22054 1.07099 0.97721 0.76894 1.45940 1.12119 1.48050 1.14498 1.22895 0.87242 0.85896 0.90522 1.16233 0.91209 1.18183 0.94795 1.22464 0.94162 0.99182 0.88584 1.76052 0.98099 1.19652 1.22638 1.78821 1.21385 1.12817 0.91772 1.47827 1.06704 1.35267 1.15418 0.64636 1.75093 0.98852 1.21566 1.17295 1.20154 0.86427 0.79687 0.84702 1.85111 1.44246 1.71590 1.20121 1.69639 1.24444 1.35210 1.09582 1.17543 0.84201 0.78706 0.84083 1.90989 1.26901 1.59219 1.67653 0.75862 0.88427 0.86509 0.91700 0.80763 0.86388 0.75720 0.70774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.98 19.25 74.32 1.43 -8.55 16 2 C -0.16 -6.68 10.75 31.13 0.33 -6.34 16 3 C 0.23 9.05 4.91 84.57 0.42 9.46 16 4 N -0.44 -21.02 2.60 -645.43 -1.68 -22.70 16 5 C -0.35 -19.21 9.28 84.04 0.78 -18.43 16 6 H 0.08 4.44 7.42 -2.91 -0.02 4.42 16 7 C 0.01 0.38 4.83 84.93 0.41 0.79 16 8 N -0.87 -44.22 9.59 21.66 0.21 -44.02 16 9 Si 0.98 41.13 29.60 68.60 2.03 43.16 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 13 C 0.43 19.74 7.63 87.66 0.67 20.41 16 14 O -0.62 -34.43 16.10 -3.06 -0.05 -34.48 16 15 C 0.09 2.91 4.42 85.64 0.38 3.29 16 16 N -0.49 -16.36 2.08 -660.99 -1.37 -17.73 16 17 C 0.28 6.87 10.06 83.68 0.84 7.71 16 18 C -0.19 -4.73 5.87 -20.08 -0.12 -4.85 16 19 C 0.24 5.28 7.93 137.36 1.09 6.37 16 20 N -0.29 -6.44 12.25 -52.20 -0.64 -7.08 16 21 N -0.05 -0.96 13.47 37.02 0.50 -0.46 16 22 N -0.20 -2.51 7.90 37.02 0.29 -2.21 16 23 H 0.49 1.09 8.96 -347.53 -3.12 -2.03 16 24 N -0.28 -5.09 11.04 -52.15 -0.58 -5.67 16 25 C 0.49 12.81 7.92 85.48 0.68 13.48 16 26 O -0.42 -7.61 12.05 -83.83 -1.01 -8.62 16 27 N -0.63 -21.57 10.39 -438.27 -4.55 -26.13 16 28 C 0.65 26.34 8.33 179.59 1.50 27.84 16 29 O -0.57 -28.43 16.70 -5.21 -0.09 -28.52 16 30 H 0.22 7.47 7.80 -4.41 -0.03 7.43 16 31 H 0.10 4.10 6.60 -2.39 -0.02 4.08 16 32 H 0.12 3.23 6.70 -2.38 -0.02 3.22 16 33 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 34 H 0.18 3.46 7.30 -2.38 -0.02 3.45 16 35 H 0.12 4.24 6.72 -2.39 -0.02 4.22 16 36 H 0.23 3.92 7.90 -2.91 -0.02 3.90 16 37 H 0.43 4.53 8.98 -74.06 -0.66 3.87 16 Total: -1.00 -88.80 342.95 -1.10 -89.91 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -2.57 Total: 13.36 kcal Atomic # 6 Polarization: 42.77 SS G_CDS: 8.40 Total: 51.18 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -7.82 Total: -125.99 kcal Atomic # 8 Polarization: -70.47 SS G_CDS: -1.15 Total: -71.62 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -88.80 -1.10 -89.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.821 kcal (2) G-P(sol) polarization free energy of solvation -88.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds