Wall clock time and date at job start Wed Apr 1 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99845 * 3 2 1 5 5 H 1.48508 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47277 * 119.99658 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00253 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47048 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99461 * 179.97438 * 11 10 9 14 14 C 1.39831 * 119.99744 * 184.52239 * 13 11 10 15 15 C 1.38997 * 119.94988 * 325.23608 * 14 13 11 16 16 C 1.37852 * 120.04289 * 180.02562 * 15 14 13 17 17 C 1.39387 * 119.95695 * 359.97438 * 16 15 14 18 18 C 1.48417 * 120.05042 * 180.02562 * 17 16 15 19 19 N 1.34059 * 126.67888 * 179.68663 * 18 17 16 20 20 N 1.28980 * 107.26711 * 179.83735 * 19 18 17 21 21 N 1.28726 * 108.95203 * 0.43318 * 20 19 18 22 22 H 0.97001 * 125.34358 * 179.70482 * 21 20 19 23 23 N 1.28881 * 109.31841 * 359.72851 * 21 20 19 24 24 C 1.39349 * 119.90448 * 0.02562 * 17 16 15 25 25 C 1.37897 * 119.95172 * 359.97438 * 24 17 16 26 26 C 1.50696 * 119.97551 * 179.97438 * 25 24 17 27 27 C 1.52999 * 117.50023 * 8.62548 * 26 25 24 28 28 C 1.52998 * 117.50129 * 300.00118 * 26 25 24 29 29 H 0.96994 * 120.00064 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46797 * 60.00105 * 10 9 7 31 31 H 1.08999 * 109.46863 * 300.00214 * 10 9 7 32 32 H 0.96997 * 120.00447 * 4.52584 * 13 11 10 33 33 H 1.07995 * 119.97622 * 0.02562 * 15 14 13 34 34 H 1.08000 * 120.02167 * 180.27877 * 16 15 14 35 35 H 1.07998 * 120.02417 * 180.02562 * 24 17 16 36 36 H 1.09004 * 115.55040 * 154.33211 * 26 25 24 37 37 H 1.08997 * 117.49881 * 359.97438 * 27 26 25 38 38 H 1.09003 * 117.49507 * 145.01816 * 27 26 25 39 39 H 1.08998 * 117.50032 * 214.97950 * 28 26 25 40 40 H 1.09003 * 117.49742 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0037 14 6 2.3568 -7.6503 -0.0910 15 6 1.1477 -7.9851 0.5073 16 6 0.6656 -9.2733 0.4156 17 6 1.3913 -10.2403 -0.2781 18 6 0.8740 -11.6277 -0.3786 19 7 1.4554 -12.6551 -1.0139 20 7 0.6900 -13.6820 -0.8617 21 7 -0.3402 -13.3369 -0.1713 22 1 -1.0703 -13.9244 0.0793 23 7 -0.2497 -12.0882 0.1345 24 6 2.6032 -9.9025 -0.8772 25 6 3.0818 -8.6126 -0.7830 26 6 4.3927 -8.2468 -1.4302 27 6 5.0445 -9.2873 -2.3431 28 6 5.6433 -8.9958 -0.9656 29 1 -0.4850 0.8400 -0.0004 30 1 3.1238 -3.7309 0.8926 31 1 3.1252 -3.7317 -0.8874 32 1 3.7989 -6.1851 0.0700 33 1 0.5856 -7.2355 1.0444 34 1 -0.2761 -9.5320 0.8768 35 1 3.1668 -10.6500 -1.4155 36 1 4.5064 -7.1972 -1.7014 37 1 4.5254 -10.2366 -2.4752 38 1 5.5871 -8.9223 -3.2152 39 1 6.5797 -8.4391 -0.9315 40 1 5.5179 -9.7529 -0.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592682329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:29 Heat of formation + Delta-G solvation = 142.712695 kcal Electronic energy + Delta-G solvation = -25853.921548 eV Core-core repulsion = 21991.954166 eV Total energy + Delta-G solvation = -3861.967382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.66703 -40.71351 -38.84473 -36.98679 -35.11495 -34.41861 -33.25550 -32.47907 -30.80366 -30.49323 -28.52523 -25.56099 -25.11272 -24.54941 -23.86439 -22.67933 -22.11858 -20.45798 -20.29719 -19.42585 -18.20476 -17.60295 -17.35845 -16.66240 -16.48880 -15.86297 -15.20766 -14.84860 -14.56987 -14.47578 -14.40536 -14.12695 -13.81640 -13.48212 -13.30715 -13.03430 -12.63308 -12.51960 -12.22834 -11.97168 -11.76428 -11.60408 -11.55985 -11.40588 -11.19761 -11.09660 -11.07340 -10.83341 -10.78375 -10.57772 -10.06799 -9.89726 -9.54794 -9.10634 -8.81166 -8.33255 -8.04475 -6.57380 -6.26659 -3.98419 0.52752 0.95893 1.22650 2.00183 2.11144 2.81063 2.89666 3.20624 3.23583 3.26601 3.44506 3.48920 3.55955 3.89778 3.98047 4.14979 4.30553 4.59680 4.75207 4.80401 4.91005 4.97823 5.02638 5.08757 5.21840 5.28759 5.35976 5.40767 5.47390 5.56781 5.62671 5.74462 5.77086 5.87121 5.99225 6.01937 6.06351 6.17114 6.28323 6.31824 6.43605 6.89098 7.40934 7.54590 7.91639 8.29658 8.31662 9.18679 10.80659 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.002182 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.416520 B =12831.365361 C =14160.680213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.055 6.055 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.492 6.492 13 N -0.678 5.678 14 C 0.189 3.811 15 C -0.124 4.124 16 C -0.060 4.060 17 C -0.045 4.045 18 C 0.230 3.770 19 N -0.272 5.272 20 N -0.053 5.053 21 N -0.230 5.230 22 H 0.475 0.525 23 N -0.296 5.296 24 C -0.058 4.058 25 C -0.087 4.087 26 C -0.119 4.119 27 C -0.173 4.173 28 C -0.169 4.169 29 H 0.270 0.730 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -24.891 -0.212 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.364 6.364 13 N -0.324 5.324 14 C 0.093 3.907 15 C -0.144 4.144 16 C -0.081 4.081 17 C -0.050 4.050 18 C -0.049 4.049 19 N -0.146 5.146 20 N -0.048 5.048 21 N -0.076 5.076 22 H 0.329 0.671 23 N -0.147 5.147 24 C -0.078 4.078 25 C -0.089 4.089 26 C -0.137 4.137 27 C -0.209 4.209 28 C -0.206 4.206 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.931 -25.649 -0.420 26.123 hybrid contribution 1.852 1.424 0.270 2.352 sum 6.783 -24.225 -0.150 25.158 Atomic orbital electron populations 1.70000 1.05955 1.27685 1.46561 1.24996 0.95045 0.99069 0.94430 0.86212 0.79238 0.81156 0.78834 1.19906 1.20793 1.19897 1.22809 0.94893 0.91515 1.59354 0.90863 1.85422 1.04366 0.96330 1.96767 1.23551 1.07057 0.94481 1.05392 1.20582 0.86502 0.86287 0.74662 1.90707 1.15215 1.85098 1.45417 1.43727 1.11191 1.03686 1.73784 1.17733 0.94457 0.83973 0.94585 1.21321 0.96261 0.96485 1.00323 1.21048 0.99070 0.91570 0.96428 1.17094 0.96592 0.86293 1.04982 1.23700 0.88936 0.96380 0.95882 1.76066 1.22878 0.95891 1.19728 1.78877 0.94533 1.21617 1.09773 1.47720 1.18780 1.06940 1.34113 0.67128 1.74977 1.21339 0.94809 1.23612 1.20748 0.94096 0.95535 0.97455 1.18749 0.96934 0.93131 1.00126 1.20888 0.90449 0.98364 1.03994 1.23074 1.03486 1.00210 0.94162 1.23070 0.96231 1.03131 0.98174 0.92049 0.88718 0.88733 0.75192 0.83001 0.84679 0.84424 0.86741 0.88081 0.88285 0.88327 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.44 20.57 -107.50 -2.21 -3.65 16 10 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 11 C 0.53 9.18 7.69 -10.98 -0.08 9.09 16 12 O -0.49 -10.23 13.27 5.55 0.07 -10.16 16 13 N -0.68 -8.72 4.85 -9.84 -0.05 -8.77 16 14 C 0.19 2.46 6.29 -83.66 -0.53 1.94 16 15 C -0.12 -1.70 8.68 -39.44 -0.34 -2.05 16 16 C -0.06 -0.74 9.69 -39.30 -0.38 -1.12 16 17 C -0.05 -0.54 5.88 -104.86 -0.62 -1.15 16 18 C 0.23 2.68 7.93 -156.30 -1.24 1.44 16 19 N -0.27 -3.19 12.23 32.15 0.39 -2.80 16 20 N -0.05 -0.52 13.47 60.35 0.81 0.30 16 21 N -0.23 -1.68 7.90 60.35 0.48 -1.21 16 22 H 0.47 1.12 8.96 -340.36 -3.05 -1.93 16 23 N -0.30 -3.01 12.08 32.17 0.39 -2.62 16 24 C -0.06 -0.63 8.94 -39.29 -0.35 -0.99 16 25 C -0.09 -0.96 5.62 -104.49 -0.59 -1.55 16 26 C -0.12 -1.07 5.43 -91.78 -0.50 -1.57 16 27 C -0.17 -1.33 9.86 -26.73 -0.26 -1.59 16 28 C -0.17 -1.24 10.16 -26.73 -0.27 -1.51 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 32 H 0.41 3.99 7.82 -40.82 -0.32 3.67 16 33 H 0.15 2.35 6.19 -52.49 -0.32 2.03 16 34 H 0.14 1.49 7.88 -52.49 -0.41 1.07 16 35 H 0.14 1.36 5.84 -52.49 -0.31 1.05 16 36 H 0.11 1.01 7.36 -51.93 -0.38 0.63 16 37 H 0.10 0.77 6.17 -51.93 -0.32 0.45 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -34.84 362.83 -10.45 -45.29 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.78 Total: 1.36 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -4.74 Total: -14.27 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 2.76 Total: -39.96 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.84 -10.45 -45.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.003 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds