Wall clock time and date at job start Wed Apr 1 2020 04:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86796 * 119.99906 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99845 * 3 2 1 5 5 H 1.48508 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47277 * 119.99658 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00253 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47048 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99461 * 179.97438 * 11 10 9 14 14 C 1.39831 * 119.99744 * 184.52239 * 13 11 10 15 15 C 1.38997 * 119.94988 * 325.23608 * 14 13 11 16 16 C 1.37852 * 120.04289 * 180.02562 * 15 14 13 17 17 C 1.39387 * 119.95695 * 359.97438 * 16 15 14 18 18 C 1.48417 * 120.05042 * 180.02562 * 17 16 15 19 19 N 1.34059 * 126.67888 * 179.68663 * 18 17 16 20 20 N 1.28980 * 107.26711 * 179.83735 * 19 18 17 21 21 N 1.28726 * 108.95203 * 0.43318 * 20 19 18 22 22 H 0.97001 * 125.34358 * 179.70482 * 21 20 19 23 23 N 1.28881 * 109.31841 * 359.72851 * 21 20 19 24 24 C 1.39349 * 119.90448 * 0.02562 * 17 16 15 25 25 C 1.37897 * 119.95172 * 359.97438 * 24 17 16 26 26 C 1.50696 * 119.97551 * 179.97438 * 25 24 17 27 27 C 1.52999 * 117.50023 * 8.62548 * 26 25 24 28 28 C 1.52998 * 117.50129 * 300.00118 * 26 25 24 29 29 H 0.96994 * 120.00064 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46797 * 60.00105 * 10 9 7 31 31 H 1.08999 * 109.46863 * 300.00214 * 10 9 7 32 32 H 0.96997 * 120.00447 * 4.52584 * 13 11 10 33 33 H 1.07995 * 119.97622 * 0.02562 * 15 14 13 34 34 H 1.08000 * 120.02167 * 180.27877 * 16 15 14 35 35 H 1.07998 * 120.02417 * 180.02562 * 24 17 16 36 36 H 1.09004 * 115.55040 * 154.33211 * 26 25 24 37 37 H 1.08997 * 117.49881 * 359.97438 * 27 26 25 38 38 H 1.09003 * 117.49507 * 145.01816 * 27 26 25 39 39 H 1.08998 * 117.50032 * 214.97950 * 28 26 25 40 40 H 1.09003 * 117.49742 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0037 14 6 2.3568 -7.6503 -0.0910 15 6 1.1477 -7.9851 0.5073 16 6 0.6656 -9.2733 0.4156 17 6 1.3913 -10.2403 -0.2781 18 6 0.8740 -11.6277 -0.3786 19 7 1.4554 -12.6551 -1.0139 20 7 0.6900 -13.6820 -0.8617 21 7 -0.3402 -13.3369 -0.1713 22 1 -1.0703 -13.9244 0.0793 23 7 -0.2497 -12.0882 0.1345 24 6 2.6032 -9.9025 -0.8772 25 6 3.0818 -8.6126 -0.7830 26 6 4.3927 -8.2468 -1.4302 27 6 5.0445 -9.2873 -2.3431 28 6 5.6433 -8.9958 -0.9656 29 1 -0.4850 0.8400 -0.0004 30 1 3.1238 -3.7309 0.8926 31 1 3.1252 -3.7317 -0.8874 32 1 3.7989 -6.1851 0.0700 33 1 0.5856 -7.2355 1.0444 34 1 -0.2761 -9.5320 0.8768 35 1 3.1668 -10.6500 -1.4155 36 1 4.5064 -7.1972 -1.7014 37 1 4.5254 -10.2366 -2.4752 38 1 5.5871 -8.9223 -3.2152 39 1 6.5797 -8.4391 -0.9315 40 1 5.5179 -9.7529 -0.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592682329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:28 Heat of formation + Delta-G solvation = 119.814367 kcal Electronic energy + Delta-G solvation = -25854.914494 eV Core-core repulsion = 21991.954166 eV Total energy + Delta-G solvation = -3862.960328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.45729 -41.80051 -39.98257 -37.72278 -36.22519 -35.26341 -34.57083 -34.16153 -31.82537 -31.61168 -29.73504 -27.65468 -25.93410 -25.47716 -24.70383 -23.36659 -22.98783 -21.66516 -21.13346 -20.20773 -19.86807 -18.86841 -18.13914 -17.98209 -17.43179 -16.87458 -16.86362 -16.30720 -16.10587 -15.45320 -15.32311 -15.12538 -14.90120 -14.78928 -14.48325 -14.29525 -13.95401 -13.61165 -13.29366 -13.16013 -12.85842 -12.80071 -12.65075 -12.59213 -12.38626 -12.26094 -12.20637 -12.01646 -11.76099 -11.56161 -11.23897 -11.15999 -11.11068 -10.87555 -10.27922 -9.72453 -9.04668 -8.65207 -8.33581 -6.11363 -0.39047 0.15405 0.29830 1.13354 1.24106 1.42432 1.45190 1.45755 1.55128 1.60418 2.11911 2.27997 2.61640 2.66012 3.00927 3.12770 3.17113 3.29045 3.54104 3.75700 3.87879 4.02379 4.11349 4.14639 4.23185 4.28187 4.36047 4.43967 4.48501 4.49767 4.56973 4.84576 4.89147 5.06203 5.15649 5.20936 5.31317 5.34089 5.40476 5.43596 5.44994 5.61599 5.86381 6.20932 6.32026 7.05672 7.08204 7.11437 8.75139 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.002182 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.416520 B =12831.365361 C =14160.680213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.145 6.145 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.535 6.535 13 N -0.654 5.654 14 C 0.169 3.831 15 C -0.138 4.138 16 C -0.065 4.065 17 C -0.043 4.043 18 C 0.216 3.784 19 N -0.290 5.290 20 N -0.055 5.055 21 N -0.201 5.201 22 H 0.494 0.506 23 N -0.300 5.300 24 C -0.058 4.058 25 C -0.073 4.073 26 C -0.137 4.137 27 C -0.169 4.169 28 C -0.155 4.155 29 H 0.271 0.729 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.429 0.571 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -26.041 -0.639 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.082 5.918 10 C -0.280 4.280 11 C 0.324 3.676 12 O -0.410 6.410 13 N -0.301 5.301 14 C 0.072 3.928 15 C -0.158 4.158 16 C -0.085 4.085 17 C -0.047 4.047 18 C -0.064 4.064 19 N -0.162 5.162 20 N -0.050 5.050 21 N -0.052 5.052 22 H 0.353 0.647 23 N -0.152 5.152 24 C -0.078 4.078 25 C -0.075 4.075 26 C -0.155 4.155 27 C -0.206 4.206 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.586 -26.859 -0.844 27.922 hybrid contribution 1.024 1.512 0.407 1.871 sum 8.609 -25.347 -0.438 26.772 Atomic orbital electron populations 1.70172 1.07946 1.28650 1.47993 1.26111 0.95944 1.03302 0.93807 0.85024 0.77805 0.75790 0.79522 1.18653 1.20636 1.18612 1.23175 0.95443 0.91903 1.58836 0.89662 1.85600 1.10040 0.99111 1.97080 1.23364 1.03949 0.93209 1.07484 1.20300 0.86207 0.86580 0.74525 1.90708 1.17049 1.85546 1.47747 1.43310 1.11466 1.02855 1.72443 1.17814 0.94872 0.84061 0.96018 1.21203 0.96818 0.96674 1.01095 1.21049 0.99492 0.91145 0.96855 1.17206 0.96702 0.86466 1.04301 1.23668 0.89546 0.96401 0.96749 1.76044 1.23659 0.96134 1.20383 1.78821 0.94921 1.21149 1.10082 1.47776 1.18634 1.06386 1.32393 0.64680 1.74946 1.20955 0.95786 1.23527 1.20932 0.93888 0.95790 0.97226 1.18913 0.97387 0.92488 0.98744 1.20938 0.90049 0.99046 1.05508 1.23169 1.03048 0.99566 0.94799 1.23142 0.95756 1.02428 0.97841 0.92039 0.86458 0.86557 0.73151 0.85348 0.84091 0.83016 0.86390 0.88083 0.87129 0.86692 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.55 -30.17 9.50 67.95 0.65 -29.53 16 8 H 0.09 4.33 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -7.76 20.57 -56.49 -1.16 -8.92 16 10 C -0.13 -4.73 6.16 71.24 0.44 -4.30 16 11 C 0.54 18.56 7.69 87.66 0.67 19.23 16 12 O -0.54 -23.15 13.27 -3.04 -0.04 -23.19 16 13 N -0.65 -16.27 4.85 -303.42 -1.47 -17.74 16 14 C 0.17 4.32 6.29 38.22 0.24 4.56 16 15 C -0.14 -3.92 8.68 22.36 0.19 -3.73 16 16 C -0.06 -1.60 9.69 22.46 0.22 -1.39 16 17 C -0.04 -0.98 5.88 -20.02 -0.12 -1.10 16 18 C 0.22 4.80 7.93 137.36 1.09 5.89 16 19 N -0.29 -6.39 12.23 -52.20 -0.64 -7.02 16 20 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 21 N -0.20 -2.59 7.90 37.02 0.29 -2.30 16 22 H 0.49 1.31 8.96 -347.53 -3.12 -1.81 16 23 N -0.30 -5.72 12.08 -52.15 -0.63 -6.35 16 24 C -0.06 -1.20 8.94 22.46 0.20 -1.00 16 25 C -0.07 -1.52 5.62 -19.78 -0.11 -1.63 16 26 C -0.14 -2.15 5.43 -11.54 -0.06 -2.21 16 27 C -0.17 -2.14 9.86 30.59 0.30 -1.84 16 28 C -0.15 -1.80 10.16 30.59 0.31 -1.49 16 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.12 3.78 8.14 -2.40 -0.02 3.76 16 32 H 0.43 7.46 7.82 -92.71 -0.72 6.74 16 33 H 0.13 4.28 6.19 -2.91 -0.02 4.26 16 34 H 0.14 3.20 7.88 -2.91 -0.02 3.17 16 35 H 0.15 2.71 5.84 -2.91 -0.02 2.69 16 36 H 0.12 1.78 7.36 -2.38 -0.02 1.76 16 37 H 0.10 1.29 6.17 -2.39 -0.01 1.27 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.64 362.83 0.95 -76.69 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -2.70 Total: 16.77 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.49 Total: -17.33 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.66 Total: -88.72 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.92 kcal Total: -77.64 0.95 -76.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.502 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds