Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48502 * 109.47384 * 269.99822 * 3 2 1 5 5 H 1.48503 * 109.47272 * 30.00018 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99550 * 3 2 1 7 7 C 1.37875 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.92750 * 89.99885 * 10 9 7 12 12 C 1.38111 * 120.06540 * 180.02562 * 11 10 9 13 13 C 1.38860 * 119.93520 * 0.02562 * 12 11 10 14 14 N 1.39943 * 120.07597 * 180.02562 * 13 12 11 15 15 C 1.34768 * 120.00456 * 146.84452 * 14 13 12 16 16 O 1.21586 * 120.00152 * 354.68750 * 15 14 13 17 17 N 1.34778 * 120.00118 * 174.68911 * 15 14 13 18 18 C 1.46502 * 120.00170 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47329 * 179.97438 * 18 17 15 20 20 N 1.29922 * 125.36582 * 90.00334 * 19 18 17 21 21 C 1.36109 * 108.47071 * 180.02562 * 20 19 18 22 22 C 1.47279 * 126.45512 * 180.02562 * 21 20 19 23 23 O 1.21527 * 119.99646 * 179.97438 * 22 21 20 24 24 O 1.34771 * 120.00152 * 359.95668 * 22 21 20 25 25 C 1.36168 * 107.08305 * 0.02562 * 21 20 19 26 26 O 1.34057 * 125.37321 * 270.02584 * 19 18 17 27 27 C 1.38870 * 119.86024 * 0.27414 * 13 12 11 28 28 C 1.38122 * 119.92658 * 359.47039 * 27 13 12 29 29 H 0.97000 * 120.00056 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47287 * 60.00178 * 9 7 2 31 31 H 1.08999 * 109.47672 * 300.00345 * 9 7 2 32 32 H 1.08000 * 119.96631 * 0.02820 * 11 10 9 33 33 H 1.08002 * 120.02974 * 179.97438 * 12 11 10 34 34 H 0.97005 * 119.99514 * 326.84499 * 14 13 12 35 35 H 0.97003 * 120.00037 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.46698 * 60.00417 * 18 17 15 37 37 H 1.08997 * 109.47388 * 300.00993 * 18 17 15 38 38 H 0.96698 * 117.00759 * 180.02562 * 24 22 21 39 39 H 1.07995 * 126.52535 * 179.73220 * 25 21 20 40 40 H 1.07992 * 120.03708 * 179.70454 * 27 13 12 41 41 H 1.07996 * 119.96631 * 180.23608 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.2445 -3.2649 -1.1975 12 6 4.7045 -4.5672 -1.2009 13 6 4.9350 -5.2238 0.0007 14 7 5.4016 -6.5432 0.0006 15 6 6.2269 -6.9662 0.9785 16 8 6.6432 -6.1784 1.8058 17 7 6.5907 -8.2625 1.0395 18 6 7.4882 -8.7222 2.1022 19 6 7.7358 -10.2005 1.9461 20 7 8.6955 -10.7330 1.2508 21 6 8.5969 -12.0871 1.3460 22 6 9.4850 -13.0760 0.7116 23 8 9.2880 -14.2638 0.8766 24 8 10.5160 -12.6636 -0.0523 25 6 7.5224 -12.3553 2.1383 26 8 7.0003 -11.1735 2.5024 27 6 4.6967 -4.5702 1.2026 28 6 4.2417 -3.2661 1.1994 29 1 -0.4850 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8753 -0.6802 -0.8888 32 1 4.0647 -2.7538 -2.1317 33 1 4.8839 -5.0745 -2.1373 34 1 5.1310 -7.1532 -0.7033 35 1 6.2588 -8.8909 0.3793 36 1 7.0299 -8.5315 3.0726 37 1 8.4348 -8.1859 2.0357 38 1 11.0711 -13.3494 -0.4481 39 1 7.1575 -13.3327 2.4173 40 1 4.8704 -5.0798 2.1387 41 1 4.0598 -2.7559 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = -58.931919 kcal Electronic energy + Delta-G solvation = -27415.343345 eV Core-core repulsion = 23069.586375 eV Total energy + Delta-G solvation = -4345.756970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29367 -40.66952 -40.56366 -38.52061 -36.75401 -35.96049 -35.42640 -34.87902 -32.98435 -31.75742 -30.66084 -30.34286 -27.99142 -26.59008 -25.83084 -23.19645 -22.57082 -22.40589 -21.57665 -21.26879 -20.16443 -19.20893 -18.79754 -18.24245 -17.73266 -17.38582 -17.04356 -16.75242 -16.14065 -15.94525 -15.59215 -15.13962 -14.90234 -14.75275 -14.22145 -14.08224 -14.07171 -13.78838 -13.39699 -13.22873 -12.88314 -12.43825 -12.38857 -12.37188 -12.05653 -11.64926 -11.63469 -11.53852 -11.50455 -10.89730 -10.58056 -10.37220 -10.21329 -9.99993 -9.90817 -9.63381 -9.59439 -9.30244 -8.56966 -8.33525 -7.40808 -6.06197 -4.05104 0.15974 0.94548 1.66393 1.86797 2.01572 2.14940 2.26169 2.53876 2.99411 3.11361 3.30136 3.38147 3.41686 3.87258 3.91826 4.38330 4.43116 4.44344 4.58875 4.64094 4.86831 4.98320 5.22317 5.25610 5.37931 5.50527 5.74007 5.78600 5.84439 5.94094 5.99053 6.12588 6.40051 6.57454 6.65489 6.81142 6.91334 6.97016 7.06282 7.08915 7.22248 7.59398 7.62021 7.68131 7.73253 8.30556 8.51124 8.99232 9.54413 11.06709 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.036223 B = 0.001515 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.806682 B =18472.063247 C =18625.265539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.040 4.040 11 C -0.104 4.104 12 C -0.143 4.143 13 C 0.126 3.874 14 N -0.677 5.677 15 C 0.709 3.291 16 O -0.566 6.566 17 N -0.746 5.746 18 C 0.240 3.760 19 C 0.185 3.815 20 N -0.419 5.419 21 C -0.066 4.066 22 C 0.577 3.423 23 O -0.508 6.508 24 O -0.492 6.492 25 C 0.046 3.954 26 O -0.181 6.181 27 C -0.116 4.116 28 C -0.104 4.104 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.403 0.597 35 H 0.400 0.600 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.419 0.581 39 H 0.239 0.761 40 H 0.127 0.873 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.098 -27.551 1.615 33.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.040 4.040 11 C -0.123 4.123 12 C -0.164 4.164 13 C 0.033 3.967 14 N -0.324 5.324 15 C 0.409 3.591 16 O -0.441 6.441 17 N -0.405 5.405 18 C 0.115 3.885 19 C -0.025 4.025 20 N -0.149 5.149 21 C -0.185 4.185 22 C 0.420 3.580 23 O -0.397 6.397 24 O -0.303 6.303 25 C -0.029 4.029 26 O -0.066 6.066 27 C -0.136 4.136 28 C -0.122 4.122 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.238 0.762 35 H 0.234 0.766 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.278 0.722 39 H 0.255 0.745 40 H 0.144 0.856 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.492 -26.397 2.316 32.313 hybrid contribution -0.087 -0.836 -0.666 1.072 sum 18.405 -27.233 1.650 32.910 Atomic orbital electron populations 1.69901 1.06263 1.26945 1.50819 1.24997 0.94729 0.99020 0.94511 0.86809 0.80459 0.83663 0.78615 1.20201 1.21292 1.18862 1.20949 0.88313 0.94642 1.51128 0.90804 1.18805 0.97370 0.88723 0.97395 1.20302 0.93449 0.98117 0.92164 1.20840 0.99465 0.93579 0.98417 1.20696 1.04728 0.95407 0.95545 1.17281 1.01751 0.83248 0.94446 1.42410 1.49481 1.12143 1.28367 1.15705 0.79276 0.81628 0.82456 1.90997 1.58487 1.53039 1.41582 1.44928 1.53315 1.08913 1.33338 1.19393 0.97046 0.79432 0.92664 1.26268 0.88445 0.93352 0.94473 1.70961 1.20656 1.05530 1.17767 1.20588 1.00243 0.90553 1.07101 1.19001 0.78398 0.85299 0.75332 1.90978 1.71701 1.17073 1.59919 1.84660 1.40090 1.44785 1.60773 1.25486 0.93022 0.89484 0.94935 1.84506 1.49299 1.14764 1.58015 1.20997 1.00169 0.95602 0.96821 1.20963 0.98992 0.93888 0.98393 0.92639 0.95357 0.95843 0.85894 0.86663 0.76216 0.76551 0.87670 0.86435 0.72223 0.74457 0.85553 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.51 -14.44 9.65 -34.44 -0.33 -14.77 16 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 10 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 11 C -0.10 -1.92 9.69 -39.61 -0.38 -2.30 16 12 C -0.14 -2.22 9.96 -39.40 -0.39 -2.61 16 13 C 0.13 1.95 6.28 -83.69 -0.53 1.43 16 14 N -0.68 -7.77 5.35 -14.23 -0.08 -7.84 16 15 C 0.71 8.38 8.30 -86.93 -0.72 7.66 16 16 O -0.57 -8.91 14.04 5.29 0.07 -8.83 16 17 N -0.75 -5.72 5.55 -66.42 -0.37 -6.09 16 18 C 0.24 1.62 6.30 -5.19 -0.03 1.59 16 19 C 0.18 1.26 7.67 -13.09 -0.10 1.16 16 20 N -0.42 -3.53 11.36 -7.67 -0.09 -3.62 16 21 C -0.07 -0.48 7.04 -83.04 -0.58 -1.07 16 22 C 0.58 4.23 8.33 34.41 0.29 4.52 16 23 O -0.51 -4.48 17.68 -19.29 -0.34 -4.82 16 24 O -0.49 -2.86 13.44 -40.69 -0.55 -3.40 16 25 C 0.05 0.22 11.95 29.99 0.36 0.58 16 26 O -0.18 -1.07 10.72 6.57 0.07 -1.00 16 27 C -0.12 -2.04 8.65 -39.39 -0.34 -2.38 16 28 C -0.10 -2.03 9.69 -39.61 -0.38 -2.41 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 31 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 32 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.40 3.16 8.83 -40.82 -0.36 2.80 16 35 H 0.40 2.16 8.48 -40.82 -0.35 1.82 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.42 0.30 9.11 45.56 0.42 0.71 16 39 H 0.24 0.29 8.06 -52.49 -0.42 -0.14 16 40 H 0.13 2.19 6.42 -52.49 -0.34 1.85 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -37.70 370.85 -7.00 -44.69 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.51 Total: 3.24 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.90 Total: -7.89 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.74 Total: -18.05 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.70 -7.00 -44.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.240 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds