Wall clock time and date at job start Wed Apr 1 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 C 1.50701 * 109.46876 * 119.99761 * 2 1 3 5 5 O 1.21294 * 119.99612 * 99.08620 * 4 2 1 6 6 N 1.34773 * 120.00137 * 279.07992 * 4 2 1 7 7 C 1.37095 * 119.99987 * 185.66561 * 6 4 2 8 8 H 1.07999 * 120.00500 * 354.90187 * 7 6 4 9 9 C 1.38950 * 120.00159 * 174.89673 * 7 6 4 10 10 N 1.31411 * 120.00031 * 33.38476 * 9 7 6 11 11 Si 1.86807 * 120.00320 * 213.38118 * 9 7 6 12 12 H 1.48500 * 109.46740 * 95.00047 * 11 9 7 13 13 H 1.48496 * 109.46935 * 214.99785 * 11 9 7 14 14 H 1.48499 * 109.46925 * 335.00295 * 11 9 7 15 15 C 1.46497 * 119.99943 * 5.66898 * 6 4 2 16 16 C 1.50702 * 109.46969 * 89.33156 * 15 6 4 17 17 O 1.20828 * 120.00055 * 359.97438 * 16 15 6 18 18 O 1.34231 * 120.00021 * 180.02562 * 16 15 6 19 19 C 1.50699 * 109.47492 * 240.00121 * 2 1 3 20 20 C 1.38241 * 119.99844 * 299.72954 * 19 2 1 21 21 C 1.38229 * 120.00110 * 179.79024 * 20 19 2 22 22 C 1.38237 * 119.99852 * 0.43386 * 21 20 19 23 23 C 1.50701 * 120.00247 * 179.83502 * 22 21 20 24 24 F 1.39899 * 109.47274 * 269.98489 * 23 22 21 25 25 F 1.39902 * 109.46716 * 29.97900 * 23 22 21 26 26 F 1.39897 * 109.47058 * 149.98221 * 23 22 21 27 27 C 1.38239 * 119.99968 * 359.81776 * 22 21 20 28 28 C 1.38232 * 119.99984 * 119.99863 * 19 2 1 29 29 H 1.08998 * 109.47750 * 301.76896 * 1 2 3 30 30 H 1.09008 * 109.47177 * 61.76735 * 1 2 3 31 31 H 1.09002 * 109.47114 * 181.76607 * 1 2 3 32 32 H 0.96996 * 120.00561 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.47192 * 209.32567 * 15 6 4 34 34 H 1.09000 * 109.47199 * 329.32923 * 15 6 4 35 35 H 0.96698 * 117.00035 * 179.97438 * 18 16 15 36 36 H 1.08005 * 119.99839 * 359.97438 * 20 19 2 37 37 H 1.07994 * 120.00424 * 180.27281 * 21 20 19 38 38 H 1.08004 * 119.99589 * 179.97438 * 27 22 21 39 39 H 1.08000 * 120.00624 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3907 -1.8669 1.1592 6 7 2.0832 -0.0606 2.4102 7 6 2.6471 -0.6668 3.5029 8 1 2.9758 -1.6937 3.4411 9 6 2.7959 0.0400 4.6899 10 7 1.9073 0.9462 5.0309 11 14 4.2590 -0.2978 5.8011 12 1 5.3427 0.6722 5.5011 13 1 3.8460 -0.1552 7.2203 14 1 4.7514 -1.6788 5.5651 15 6 1.5358 1.2935 2.5248 16 6 0.0786 1.2160 2.9009 17 8 -0.4488 0.1401 3.0567 18 8 -0.6338 2.3423 3.0618 19 6 2.0324 -0.7104 -1.2304 20 6 1.7031 -2.0355 -1.4464 21 6 2.1603 -2.6859 -2.5772 22 6 2.9543 -2.0138 -3.4876 23 6 3.4559 -2.7239 -4.7185 24 9 4.6887 -3.3240 -4.4409 25 9 2.5344 -3.7056 -5.0985 26 9 3.6100 -1.8012 -5.7588 27 6 3.2879 -0.6902 -3.2690 28 6 2.8271 -0.0385 -2.1403 29 1 -0.3634 0.5410 0.8736 30 1 -0.3634 0.4862 -0.9055 31 1 -0.3633 -1.0272 0.0317 32 1 2.0113 1.4399 5.8593 33 1 2.0807 1.8418 3.2933 34 1 1.6377 1.8086 1.5696 35 1 -1.5649 2.2421 3.3027 36 1 1.0860 -2.5618 -0.7331 37 1 1.8994 -3.7198 -2.7481 38 1 3.9086 -0.1653 -3.9801 39 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603137745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:52 Heat of formation + Delta-G solvation = -233.990296 kcal Electronic energy + Delta-G solvation = -30746.507567 eV Core-core repulsion = 25819.010004 eV Total energy + Delta-G solvation = -4927.497563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.17821 -47.70717 -47.63055 -40.16210 -39.30318 -38.11974 -35.46043 -34.79795 -33.97552 -31.92794 -31.02438 -30.20554 -27.82707 -26.00985 -25.38400 -23.39936 -22.78566 -21.50158 -21.14616 -18.90885 -18.50560 -18.40126 -18.36732 -17.32400 -17.13082 -16.53532 -15.78240 -15.54936 -15.14387 -14.88124 -14.68974 -14.54796 -14.46589 -14.32080 -14.11509 -14.02497 -13.88677 -13.81025 -13.76453 -13.30497 -13.16464 -12.76224 -12.61440 -12.27321 -11.96802 -11.91091 -11.72247 -11.49058 -11.41910 -11.03170 -10.94976 -10.84075 -10.54543 -10.44426 -10.28303 -9.80862 -9.04527 -8.99806 -8.83720 -8.49556 -8.16720 -6.64451 -3.90599 1.02091 1.42071 2.66522 3.04546 3.20005 3.22827 3.26060 3.45830 3.56832 3.73196 3.95920 4.02985 4.10687 4.43068 4.56547 4.82293 4.84543 4.91075 4.96476 5.26168 5.38314 5.39400 5.55079 5.58322 5.71650 5.85778 5.93521 6.00291 6.07824 6.24360 6.29140 6.30454 6.44033 6.59566 6.73415 6.89968 7.30715 7.43315 7.84156 8.24311 8.81618 8.96109 9.18268 9.70536 10.43082 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.003055 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.759956 B = 9164.239055 C =10164.432891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.093 0.907 4 C 0.461 3.539 5 O -0.568 6.568 6 N -0.426 5.426 7 C -0.308 4.308 8 H 0.114 0.886 9 C 0.035 3.965 10 N -0.869 5.869 11 Si 0.918 3.082 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.121 3.879 16 C 0.486 3.514 17 O -0.506 6.506 18 O -0.531 6.531 19 C -0.022 4.022 20 C -0.075 4.075 21 C -0.076 4.076 22 C -0.193 4.193 23 C 0.510 3.490 24 F -0.179 7.179 25 F -0.180 7.180 26 F -0.181 7.181 27 C -0.078 4.078 28 C -0.118 4.118 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.273 0.727 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.393 0.607 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 3.384 -13.813 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.249 3.751 5 O -0.451 6.451 6 N -0.145 5.145 7 C -0.435 4.435 8 H 0.131 0.869 9 C -0.168 4.168 10 N -0.508 5.508 11 Si 0.744 3.256 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.005 4.005 16 C 0.327 3.673 17 O -0.393 6.393 18 O -0.342 6.342 19 C -0.022 4.022 20 C -0.093 4.093 21 C -0.095 4.095 22 C -0.195 4.195 23 C 0.456 3.544 24 F -0.160 7.160 25 F -0.161 7.161 26 F -0.162 7.162 27 C -0.096 4.096 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.250 0.750 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.598 2.625 -13.762 14.023 hybrid contribution -0.030 -0.172 0.838 0.856 sum -0.628 2.454 -12.924 13.170 Atomic orbital electron populations 1.21831 0.92348 1.03321 1.02070 1.20346 0.97554 0.99742 0.92171 0.88941 1.19544 0.84266 0.87206 0.84078 1.90544 1.52716 1.16577 1.85217 1.43560 1.49688 1.12529 1.08704 1.19756 1.34237 0.99816 0.89645 0.86886 1.25178 0.97659 0.96643 0.97324 1.70036 1.30321 1.26436 1.24009 0.86040 0.81813 0.79431 0.78340 1.20146 1.21148 1.19153 1.21424 0.88108 0.87938 1.03062 1.24069 0.89878 0.81039 0.72287 1.90650 1.71430 1.30268 1.46913 1.84554 1.27805 1.38882 1.82951 1.19748 0.94432 0.94185 0.93857 1.21089 0.99048 0.93895 0.95260 1.20898 0.95479 0.99942 0.93133 1.19867 1.06611 0.96530 0.96458 1.18371 0.75356 0.76895 0.83812 1.93221 1.44624 1.84461 1.93679 1.93173 1.66450 1.64147 1.92360 1.93164 1.95628 1.66237 1.61208 1.20763 0.98543 0.92575 0.97718 1.21017 0.98230 1.00444 0.93896 0.91776 0.92111 0.91701 0.91672 0.83401 0.90219 0.75030 0.84337 0.85066 0.85090 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.87 37.15 0.33 -1.82 16 2 C -0.08 -1.28 2.11 -92.93 -0.20 -1.48 16 3 H 0.09 1.32 6.18 -51.93 -0.32 1.00 16 4 C 0.46 10.30 6.74 -10.99 -0.07 10.23 16 5 O -0.57 -14.46 14.15 5.55 0.08 -14.38 16 6 N -0.43 -10.05 2.11 -116.10 -0.25 -10.30 16 7 C -0.31 -8.12 9.40 -14.93 -0.14 -8.26 16 8 H 0.11 3.20 7.35 -52.49 -0.39 2.82 16 9 C 0.04 0.87 4.92 -17.47 -0.09 0.78 16 10 N -0.87 -21.36 9.68 55.50 0.54 -20.82 16 11 Si 0.92 19.62 29.66 -169.99 -5.04 14.58 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 13 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.12 2.45 4.91 -5.19 -0.03 2.42 16 16 C 0.49 9.94 5.03 36.01 0.18 10.12 16 17 O -0.51 -12.15 16.29 -18.75 -0.31 -12.46 16 18 O -0.53 -8.72 13.42 -39.26 -0.53 -9.25 16 19 C -0.02 -0.34 4.61 -104.62 -0.48 -0.82 16 20 C -0.07 -1.20 7.88 -39.58 -0.31 -1.51 16 21 C -0.08 -1.08 9.40 -39.58 -0.37 -1.45 16 22 C -0.19 -2.58 5.45 -104.62 -0.57 -3.15 16 23 C 0.51 6.39 3.36 36.01 0.12 6.51 16 24 F -0.18 -2.38 17.30 2.25 0.04 -2.34 16 25 F -0.18 -2.25 16.46 2.25 0.04 -2.21 16 26 F -0.18 -2.17 16.46 2.25 0.04 -2.13 16 27 C -0.08 -0.97 9.40 -39.58 -0.37 -1.34 16 28 C -0.12 -1.55 9.67 -39.58 -0.38 -1.93 16 29 H 0.06 1.07 4.12 -51.93 -0.21 0.86 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 31 H 0.06 1.07 7.47 -51.93 -0.39 0.68 16 32 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 33 H 0.15 3.19 5.58 -51.93 -0.29 2.90 16 34 H 0.08 1.29 5.92 -51.93 -0.31 0.98 16 35 H 0.39 4.81 9.10 45.56 0.41 5.22 16 36 H 0.14 2.37 7.00 -52.48 -0.37 2.00 16 37 H 0.13 1.62 7.60 -52.49 -0.40 1.22 16 38 H 0.13 1.32 7.60 -52.48 -0.40 0.92 16 39 H 0.13 1.39 7.95 -52.49 -0.42 0.97 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -31.14 340.98 -5.27 -36.40 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.63 Total: 9.45 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.38 Total: 8.32 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.29 Total: -31.12 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.75 Total: -36.09 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.11 Total: -6.68 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.04 Total: 14.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.14 -5.27 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603137745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.588 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds