Wall clock time and date at job start Wed Apr 1 2020 03:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 C 1.50701 * 109.46876 * 119.99761 * 2 1 3 5 5 O 1.21294 * 119.99612 * 99.08620 * 4 2 1 6 6 N 1.34773 * 120.00137 * 279.07992 * 4 2 1 7 7 C 1.37095 * 119.99987 * 185.66561 * 6 4 2 8 8 H 1.07999 * 120.00500 * 354.90187 * 7 6 4 9 9 C 1.38950 * 120.00159 * 174.89673 * 7 6 4 10 10 N 1.31411 * 120.00031 * 33.38476 * 9 7 6 11 11 Si 1.86807 * 120.00320 * 213.38118 * 9 7 6 12 12 H 1.48500 * 109.46740 * 95.00047 * 11 9 7 13 13 H 1.48496 * 109.46935 * 214.99785 * 11 9 7 14 14 H 1.48499 * 109.46925 * 335.00295 * 11 9 7 15 15 C 1.46497 * 119.99943 * 5.66898 * 6 4 2 16 16 C 1.50702 * 109.46969 * 89.33156 * 15 6 4 17 17 O 1.20828 * 120.00055 * 359.97438 * 16 15 6 18 18 O 1.34231 * 120.00021 * 180.02562 * 16 15 6 19 19 C 1.50699 * 109.47492 * 240.00121 * 2 1 3 20 20 C 1.38241 * 119.99844 * 299.72954 * 19 2 1 21 21 C 1.38229 * 120.00110 * 179.79024 * 20 19 2 22 22 C 1.38237 * 119.99852 * 0.43386 * 21 20 19 23 23 C 1.50701 * 120.00247 * 179.83502 * 22 21 20 24 24 F 1.39899 * 109.47274 * 269.98489 * 23 22 21 25 25 F 1.39902 * 109.46716 * 29.97900 * 23 22 21 26 26 F 1.39897 * 109.47058 * 149.98221 * 23 22 21 27 27 C 1.38239 * 119.99968 * 359.81776 * 22 21 20 28 28 C 1.38232 * 119.99984 * 119.99863 * 19 2 1 29 29 H 1.08998 * 109.47750 * 301.76896 * 1 2 3 30 30 H 1.09008 * 109.47177 * 61.76735 * 1 2 3 31 31 H 1.09002 * 109.47114 * 181.76607 * 1 2 3 32 32 H 0.96996 * 120.00561 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.47192 * 209.32567 * 15 6 4 34 34 H 1.09000 * 109.47199 * 329.32923 * 15 6 4 35 35 H 0.96698 * 117.00035 * 179.97438 * 18 16 15 36 36 H 1.08005 * 119.99839 * 359.97438 * 20 19 2 37 37 H 1.07994 * 120.00424 * 180.27281 * 21 20 19 38 38 H 1.08004 * 119.99589 * 179.97438 * 27 22 21 39 39 H 1.08000 * 120.00624 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3907 -1.8669 1.1592 6 7 2.0832 -0.0606 2.4102 7 6 2.6471 -0.6668 3.5029 8 1 2.9758 -1.6937 3.4411 9 6 2.7959 0.0400 4.6899 10 7 1.9073 0.9462 5.0309 11 14 4.2590 -0.2978 5.8011 12 1 5.3427 0.6722 5.5011 13 1 3.8460 -0.1552 7.2203 14 1 4.7514 -1.6788 5.5651 15 6 1.5358 1.2935 2.5248 16 6 0.0786 1.2160 2.9009 17 8 -0.4488 0.1401 3.0567 18 8 -0.6338 2.3423 3.0618 19 6 2.0324 -0.7104 -1.2304 20 6 1.7031 -2.0355 -1.4464 21 6 2.1603 -2.6859 -2.5772 22 6 2.9543 -2.0138 -3.4876 23 6 3.4559 -2.7239 -4.7185 24 9 4.6887 -3.3240 -4.4409 25 9 2.5344 -3.7056 -5.0985 26 9 3.6100 -1.8012 -5.7588 27 6 3.2879 -0.6902 -3.2690 28 6 2.8271 -0.0385 -2.1403 29 1 -0.3634 0.5410 0.8736 30 1 -0.3634 0.4862 -0.9055 31 1 -0.3633 -1.0272 0.0317 32 1 2.0113 1.4399 5.8593 33 1 2.0807 1.8418 3.2933 34 1 1.6377 1.8086 1.5696 35 1 -1.5649 2.2421 3.3027 36 1 1.0860 -2.5618 -0.7331 37 1 1.8994 -3.7198 -2.7481 38 1 3.9086 -0.1653 -3.9801 39 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603137745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:51 Heat of formation + Delta-G solvation = -252.330184 kcal Electronic energy + Delta-G solvation = -30747.302844 eV Core-core repulsion = 25819.010004 eV Total energy + Delta-G solvation = -4928.292840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.17352 -48.68361 -48.64292 -41.64594 -40.66231 -39.62134 -37.06697 -36.45636 -35.36606 -33.72250 -32.08159 -31.41367 -29.49219 -27.24094 -26.98316 -24.74022 -23.86942 -22.94961 -22.50508 -20.42039 -19.50777 -19.42568 -19.39156 -19.00003 -18.78267 -18.11646 -17.30805 -16.95940 -16.59858 -16.37145 -16.01095 -15.74409 -15.65785 -15.47850 -15.42216 -15.23809 -15.09656 -14.88500 -14.80327 -14.68187 -14.37622 -14.04692 -13.88750 -13.71968 -13.65236 -13.42656 -13.02252 -12.96429 -12.69235 -12.57021 -12.36225 -12.24063 -12.14782 -12.04860 -11.82565 -11.52481 -10.80484 -10.40655 -10.00103 -9.95628 -9.93078 -8.51909 -5.84707 -0.07546 0.36142 1.33213 1.44479 1.55118 1.62341 1.65393 1.84583 2.21829 2.47697 2.49867 2.71635 2.95400 3.03604 3.12300 3.42999 3.59017 3.71687 3.91857 3.94893 4.06995 4.21146 4.39221 4.43941 4.48448 4.69021 4.76532 4.77785 4.83361 4.97585 5.00309 5.13111 5.19441 5.26069 5.49151 5.59942 5.80429 5.90686 5.99486 6.38664 7.10814 7.29144 7.42503 7.94431 8.53992 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.003055 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.759956 B = 9164.239055 C =10164.432891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 H 0.125 0.875 4 C 0.450 3.550 5 O -0.613 6.613 6 N -0.440 5.440 7 C -0.348 4.348 8 H 0.075 0.925 9 C 0.013 3.987 10 N -0.876 5.876 11 Si 0.975 3.025 12 H -0.260 1.260 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.118 3.882 16 C 0.494 3.506 17 O -0.550 6.550 18 O -0.515 6.515 19 C -0.041 4.041 20 C -0.095 4.095 21 C -0.083 4.083 22 C -0.197 4.197 23 C 0.516 3.484 24 F -0.183 7.183 25 F -0.180 7.180 26 F -0.174 7.174 27 C -0.072 4.072 28 C -0.110 4.110 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.279 0.721 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.414 0.586 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 6.001 -15.225 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 H 0.143 0.857 4 C 0.241 3.759 5 O -0.498 6.498 6 N -0.158 5.158 7 C -0.474 4.474 8 H 0.093 0.907 9 C -0.190 4.190 10 N -0.514 5.514 11 Si 0.800 3.200 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.208 1.208 15 C -0.007 4.007 16 C 0.337 3.663 17 O -0.440 6.440 18 O -0.327 6.327 19 C -0.041 4.041 20 C -0.113 4.113 21 C -0.101 4.101 22 C -0.198 4.198 23 C 0.462 3.538 24 F -0.165 7.165 25 F -0.162 7.162 26 F -0.155 7.155 27 C -0.090 4.090 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.274 0.726 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.044 5.304 -15.172 16.072 hybrid contribution -0.273 -0.980 1.258 1.618 sum -0.317 4.323 -13.915 14.574 Atomic orbital electron populations 1.21792 0.91559 1.02262 1.03320 1.20308 0.98060 1.00607 0.89633 0.85702 1.20617 0.82910 0.87058 0.85336 1.90507 1.54339 1.18822 1.86178 1.43670 1.50090 1.13665 1.08385 1.19499 1.37162 0.99166 0.91614 0.90681 1.25742 0.98977 0.96413 0.97851 1.70076 1.30493 1.26462 1.24408 0.85212 0.79291 0.78667 0.76871 1.18442 1.20492 1.20761 1.21506 0.87724 0.86408 1.05078 1.24009 0.90112 0.80989 0.71211 1.90646 1.72375 1.32033 1.48972 1.84476 1.29351 1.36696 1.82224 1.19789 0.95937 0.94170 0.94252 1.20977 0.99966 0.94666 0.95698 1.20966 0.95748 1.00481 0.92888 1.20030 1.06164 0.97182 0.96427 1.18208 0.75081 0.76839 0.83671 1.93216 1.44934 1.84569 1.93741 1.93176 1.66459 1.64206 1.92336 1.93179 1.95575 1.65941 1.60824 1.21143 0.97897 0.92105 0.97868 1.21344 0.96590 1.01835 0.93016 0.92902 0.88305 0.93917 0.91099 0.84527 0.85722 0.72576 0.86987 0.84270 0.82092 0.81601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 8.87 71.98 0.64 -3.32 16 2 C -0.06 -2.09 2.11 -12.29 -0.03 -2.12 16 3 H 0.13 3.13 6.18 -2.39 -0.01 3.11 16 4 C 0.45 20.62 6.74 87.66 0.59 21.21 16 5 O -0.61 -33.01 14.15 -3.07 -0.04 -33.06 16 6 N -0.44 -21.10 2.11 -639.61 -1.35 -22.45 16 7 C -0.35 -19.02 9.40 84.04 0.79 -18.23 16 8 H 0.08 4.57 7.35 -2.91 -0.02 4.55 16 9 C 0.01 0.65 4.92 84.93 0.42 1.07 16 10 N -0.88 -42.77 9.68 21.66 0.21 -42.56 16 11 Si 0.98 40.55 29.66 68.60 2.03 42.58 16 12 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 13 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.12 4.65 4.91 85.63 0.42 5.07 16 16 C 0.49 19.72 5.03 71.24 0.36 20.08 16 17 O -0.55 -26.72 16.29 21.96 0.36 -26.36 16 18 O -0.52 -15.73 13.42 -51.42 -0.69 -16.42 16 19 C -0.04 -1.23 4.61 -19.87 -0.09 -1.32 16 20 C -0.09 -3.10 7.88 22.27 0.18 -2.92 16 21 C -0.08 -2.32 9.40 22.27 0.21 -2.12 16 22 C -0.20 -4.90 5.45 -19.86 -0.11 -5.01 16 23 C 0.52 11.98 3.36 71.24 0.24 12.22 16 24 F -0.18 -4.60 17.30 44.97 0.78 -3.82 16 25 F -0.18 -4.27 16.46 44.97 0.74 -3.53 16 26 F -0.17 -3.69 16.46 44.97 0.74 -2.95 16 27 C -0.07 -1.57 9.40 22.27 0.21 -1.36 16 28 C -0.11 -2.53 9.67 22.27 0.22 -2.32 16 29 H 0.05 1.70 4.12 -2.39 -0.01 1.70 16 30 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.04 1.45 7.47 -2.39 -0.02 1.43 16 32 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 33 H 0.14 5.75 5.58 -2.39 -0.01 5.74 16 34 H 0.13 3.65 5.92 -2.39 -0.01 3.63 16 35 H 0.41 9.15 9.10 -74.06 -0.67 8.47 16 36 H 0.11 4.17 7.00 -2.91 -0.02 4.15 16 37 H 0.14 3.51 7.60 -2.91 -0.02 3.49 16 38 H 0.16 2.52 7.60 -2.91 -0.02 2.50 16 39 H 0.17 2.64 7.95 -2.91 -0.02 2.62 16 Total: -1.00 -71.01 340.98 7.29 -63.72 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.48 Total: 23.92 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 4.04 Total: 20.94 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.14 Total: -65.01 kcal Atomic # 8 Polarization: -75.46 SS G_CDS: -0.38 Total: -75.84 kcal Atomic # 9 Polarization: -12.56 SS G_CDS: 2.26 Total: -10.30 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -71.01 7.29 -63.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603137745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.615 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds