Wall clock time and date at job start Wed Apr 1 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47244 * 2 1 4 4 O 1.33914 * 125.60804 * 275.20284 * 3 2 1 5 5 C 1.34934 * 109.37924 * 180.02562 * 4 3 2 6 6 C 1.46474 * 125.99430 * 180.02562 * 5 4 3 7 7 O 1.21619 * 120.00137 * 179.97438 * 6 5 4 8 8 O 1.34899 * 120.00092 * 359.96790 * 6 5 4 9 9 C 1.36633 * 108.01219 * 359.97438 * 5 4 3 10 10 C 1.35166 * 125.61004 * 95.20175 * 3 2 1 11 11 S 1.76196 * 126.43798 * 0.02562 * 10 3 2 12 12 O 1.42096 * 106.40232 * 277.83924 * 11 10 3 13 13 O 1.42103 * 106.40251 * 50.76025 * 11 10 3 14 14 N 1.65605 * 107.21986 * 164.29925 * 11 10 3 15 15 C 1.46501 * 119.99752 * 276.75155 * 14 11 10 16 16 C 1.50695 * 109.46959 * 95.00202 * 15 14 11 17 17 H 1.08008 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99946 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00292 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47141 * 59.99868 * 20 18 16 22 22 H 1.48500 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47343 * 300.00144 * 20 18 16 24 24 C 1.46501 * 119.99850 * 96.75456 * 14 11 10 25 25 C 1.52996 * 109.47045 * 114.05908 * 24 14 11 26 26 C 1.52999 * 109.46600 * 234.05913 * 24 14 11 27 27 H 1.08999 * 109.47432 * 184.88818 * 1 2 3 28 28 H 1.08999 * 109.47387 * 304.88993 * 1 2 3 29 29 H 1.09004 * 109.46913 * 64.89226 * 1 2 3 30 30 H 1.09005 * 109.47397 * 239.99359 * 2 1 3 31 31 H 1.09003 * 109.46858 * 120.00019 * 2 1 3 32 32 H 0.96696 * 117.00069 * 179.97438 * 8 6 5 33 33 H 1.08000 * 126.65356 * 180.26495 * 9 5 4 34 34 H 1.08998 * 109.46824 * 214.99835 * 15 14 11 35 35 H 1.08999 * 109.47098 * 334.99734 * 15 14 11 36 36 H 0.96995 * 120.00354 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.47200 * 354.05377 * 24 14 11 38 38 H 1.09000 * 109.47554 * 59.99686 * 25 24 14 39 39 H 1.09003 * 109.47141 * 180.02562 * 25 24 14 40 40 H 1.09002 * 109.47399 * 299.99472 * 25 24 14 41 41 H 1.08998 * 109.47704 * 58.50940 * 26 24 14 42 42 H 1.09005 * 109.46721 * 178.51186 * 26 24 14 43 43 H 1.09001 * 109.47248 * 298.50454 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.1992 2.1888 -1.0843 5 6 2.6638 3.3986 -0.7088 6 6 2.9727 4.5174 -1.6023 7 8 3.3875 5.5649 -1.1443 8 8 2.7973 4.3858 -2.9334 9 6 2.7946 3.3975 0.6513 10 6 2.3886 2.1296 1.0944 11 16 2.3515 1.5667 2.7636 12 8 1.0111 1.7213 3.2094 13 8 3.0385 0.3229 2.7830 14 7 3.2657 2.6199 3.6566 15 6 4.7209 2.4600 3.7136 16 6 5.3643 3.3442 2.6767 17 1 4.7506 3.9630 2.0387 18 6 6.7363 3.3633 2.5424 19 7 7.4836 2.6102 3.3195 20 14 7.5339 4.4588 1.2566 21 1 7.1800 5.8757 1.5252 22 1 9.0090 4.2978 1.3153 23 1 7.0467 4.0742 -0.0924 24 6 2.6193 3.7113 4.3896 25 6 2.7920 3.4881 5.8933 26 6 3.2624 5.0420 3.9942 27 1 -0.3634 -1.0239 0.0876 28 1 -0.3634 0.5878 0.8429 29 1 -0.3633 0.4361 -0.9306 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.0144 5.1515 -3.4826 33 1 3.1393 4.2155 1.2665 34 1 5.0788 2.7417 4.7038 35 1 4.9802 1.4200 3.5157 36 1 8.4489 2.6233 3.2249 37 1 1.5573 3.7342 4.1451 38 1 3.8540 3.4652 6.1377 39 1 2.3106 4.2999 6.4387 40 1 2.3338 2.5400 6.1749 41 1 3.1628 5.1885 2.9187 42 1 2.7639 5.8567 4.5197 43 1 4.3188 5.0291 4.2628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605883249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:16 Heat of formation + Delta-G solvation = -155.081325 kcal Electronic energy + Delta-G solvation = -30490.069073 eV Core-core repulsion = 26243.293952 eV Total energy + Delta-G solvation = -4246.775121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.83647 -39.94774 -37.06411 -36.64631 -36.24547 -35.45672 -34.45977 -33.15377 -32.81661 -30.69457 -29.47127 -27.12068 -26.49940 -25.17616 -23.27195 -22.90096 -21.91905 -21.11805 -20.12758 -19.03788 -17.88386 -17.66730 -17.05214 -16.73719 -16.53121 -15.85925 -15.52414 -15.38329 -15.12649 -14.65974 -14.55550 -13.86740 -13.70961 -13.69337 -13.29457 -13.19187 -13.04170 -12.63195 -12.32698 -12.13379 -11.92158 -11.81621 -11.72740 -11.65101 -11.55187 -11.33589 -11.20230 -11.09935 -11.06934 -10.96599 -10.91056 -10.77346 -10.52419 -10.39184 -10.28513 -9.92641 -9.60255 -8.78004 -8.49910 -8.15772 -6.13155 -4.18568 0.80266 0.96551 1.78484 2.26837 2.85463 3.06543 3.27500 3.31575 3.36044 3.45558 4.07019 4.31983 4.36723 4.76471 4.83372 4.92026 5.10483 5.22259 5.25260 5.28655 5.32478 5.48149 5.63439 5.64762 5.70412 5.70756 5.75878 5.95903 6.02750 6.13081 6.16483 6.23649 6.26820 6.47783 6.54473 6.64429 6.75409 7.08838 7.33313 7.38056 7.60307 7.72792 7.83452 8.10908 8.83409 9.47325 10.94678 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008147 B = 0.007013 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.841732 B = 3991.660177 C = 5825.505407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.081 4.081 3 C 0.159 3.841 4 O -0.144 6.144 5 C -0.092 4.092 6 C 0.575 3.425 7 O -0.488 6.488 8 O -0.508 6.508 9 C 0.003 3.997 10 C -0.755 4.755 11 S 2.711 3.289 12 O -0.972 6.972 13 O -0.954 6.954 14 N -0.974 5.974 15 C 0.244 3.756 16 C -0.542 4.542 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.887 5.887 20 Si 0.884 3.116 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.157 4.157 26 C -0.156 4.156 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.417 0.583 33 H 0.183 0.817 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 -0.192 -5.754 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.118 4.118 3 C 0.102 3.898 4 O -0.038 6.038 5 C -0.141 4.141 6 C 0.419 3.581 7 O -0.377 6.377 8 O -0.319 6.319 9 C -0.016 4.016 10 C -0.839 4.839 11 S 2.797 3.203 12 O -0.963 6.963 13 O -0.945 6.945 14 N -0.815 5.815 15 C 0.122 3.878 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.134 4.134 19 N -0.525 5.525 20 Si 0.712 3.288 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.203 1.203 24 C 0.039 3.961 25 C -0.216 4.216 26 C -0.215 4.215 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.276 0.724 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.500 -1.070 -5.429 13.670 hybrid contribution 1.264 1.755 -1.755 2.785 sum -11.236 0.685 -7.184 13.354 Atomic orbital electron populations 1.21895 0.92304 1.03775 1.03613 1.20806 0.97778 0.86140 1.07099 1.22602 0.91372 0.93114 0.82712 1.84024 1.63673 1.21426 1.34657 1.20566 1.15252 0.85390 0.92885 1.18717 0.74183 0.84693 0.80476 1.91032 1.42515 1.27187 1.76983 1.84651 1.81078 1.47556 1.18664 1.21798 0.91398 0.96220 0.92196 1.32219 1.21274 1.04490 1.25870 1.01411 0.72796 0.73765 0.72311 1.93528 1.35971 1.86797 1.79969 1.93562 1.74514 1.40060 1.86327 1.57398 1.19771 1.44724 1.59630 1.19259 0.71317 0.98417 0.98773 1.21617 0.91751 1.25675 1.19036 0.91655 1.24862 0.97244 0.95460 0.95807 1.69905 1.05533 1.38793 1.38310 0.86765 0.78359 0.81435 0.82254 1.19849 1.21158 1.20331 1.20768 0.96215 0.87238 0.91917 1.22107 1.03084 1.01207 0.95172 1.22211 1.03480 0.94789 1.00971 0.90288 0.91034 0.91585 0.87679 0.86590 0.72438 0.79966 0.93443 0.93077 0.92534 0.89685 0.91323 0.92172 0.92879 0.92896 0.93235 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.08 -1.03 6.31 -27.89 -0.18 -1.21 16 3 C 0.16 2.62 6.57 -35.40 -0.23 2.38 16 4 O -0.14 -2.39 10.67 4.75 0.05 -2.34 16 5 C -0.09 -1.63 7.18 -36.85 -0.26 -1.89 16 6 C 0.58 9.32 8.30 34.05 0.28 9.60 16 7 O -0.49 -8.94 17.65 -19.36 -0.34 -9.29 16 8 O -0.51 -6.19 13.44 -42.48 -0.57 -6.76 16 9 C 0.00 0.06 9.48 -39.38 -0.37 -0.31 16 10 C -0.76 -13.99 6.11 -39.89 -0.24 -14.23 16 11 S 2.71 52.73 5.39 -107.50 -0.58 52.15 16 12 O -0.97 -18.79 16.46 -57.17 -0.94 -19.73 16 13 O -0.95 -20.56 15.40 -57.17 -0.88 -21.44 16 14 N -0.97 -19.29 2.59 -108.58 -0.28 -19.57 16 15 C 0.24 5.71 4.88 -5.20 -0.03 5.68 16 16 C -0.54 -13.52 7.46 -34.44 -0.26 -13.78 16 17 H 0.07 1.56 4.20 -52.48 -0.22 1.34 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 20 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.15 2.46 3.22 -67.93 -0.22 2.24 16 25 C -0.16 -2.37 9.26 37.16 0.34 -2.03 16 26 C -0.16 -2.58 8.12 37.16 0.30 -2.28 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.12 1.56 6.48 -51.93 -0.34 1.22 16 32 H 0.42 2.77 9.11 45.56 0.42 3.19 16 33 H 0.18 3.43 4.59 -52.49 -0.24 3.19 16 34 H 0.05 1.14 6.76 -51.93 -0.35 0.79 16 35 H 0.05 1.32 7.01 -51.93 -0.36 0.96 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 1.35 6.85 -51.93 -0.36 0.99 16 38 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.89 5.84 -51.93 -0.30 0.59 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.61 6.84 -51.93 -0.35 1.25 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -32.64 367.87 -7.44 -40.08 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.56 Total: 4.60 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.59 Total: -15.35 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.46 Total: -43.58 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -2.68 Total: -59.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.58 Total: 52.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.64 -7.44 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605883249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.999 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds