Wall clock time and date at job start Wed Apr 1 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47244 * 2 1 4 4 O 1.33914 * 125.60804 * 275.20284 * 3 2 1 5 5 C 1.34934 * 109.37924 * 180.02562 * 4 3 2 6 6 C 1.46474 * 125.99430 * 180.02562 * 5 4 3 7 7 O 1.21619 * 120.00137 * 179.97438 * 6 5 4 8 8 O 1.34899 * 120.00092 * 359.96790 * 6 5 4 9 9 C 1.36633 * 108.01219 * 359.97438 * 5 4 3 10 10 C 1.35166 * 125.61004 * 95.20175 * 3 2 1 11 11 S 1.76196 * 126.43798 * 0.02562 * 10 3 2 12 12 O 1.42096 * 106.40232 * 277.83924 * 11 10 3 13 13 O 1.42103 * 106.40251 * 50.76025 * 11 10 3 14 14 N 1.65605 * 107.21986 * 164.29925 * 11 10 3 15 15 C 1.46501 * 119.99752 * 276.75155 * 14 11 10 16 16 C 1.50695 * 109.46959 * 95.00202 * 15 14 11 17 17 H 1.08008 * 120.00045 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99946 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00292 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47141 * 59.99868 * 20 18 16 22 22 H 1.48500 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47343 * 300.00144 * 20 18 16 24 24 C 1.46501 * 119.99850 * 96.75456 * 14 11 10 25 25 C 1.52996 * 109.47045 * 114.05908 * 24 14 11 26 26 C 1.52999 * 109.46600 * 234.05913 * 24 14 11 27 27 H 1.08999 * 109.47432 * 184.88818 * 1 2 3 28 28 H 1.08999 * 109.47387 * 304.88993 * 1 2 3 29 29 H 1.09004 * 109.46913 * 64.89226 * 1 2 3 30 30 H 1.09005 * 109.47397 * 239.99359 * 2 1 3 31 31 H 1.09003 * 109.46858 * 120.00019 * 2 1 3 32 32 H 0.96696 * 117.00069 * 179.97438 * 8 6 5 33 33 H 1.08000 * 126.65356 * 180.26495 * 9 5 4 34 34 H 1.08998 * 109.46824 * 214.99835 * 15 14 11 35 35 H 1.08999 * 109.47098 * 334.99734 * 15 14 11 36 36 H 0.96995 * 120.00354 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.47200 * 354.05377 * 24 14 11 38 38 H 1.09000 * 109.47554 * 59.99686 * 25 24 14 39 39 H 1.09003 * 109.47141 * 180.02562 * 25 24 14 40 40 H 1.09002 * 109.47399 * 299.99472 * 25 24 14 41 41 H 1.08998 * 109.47704 * 58.50940 * 26 24 14 42 42 H 1.09005 * 109.46721 * 178.51186 * 26 24 14 43 43 H 1.09001 * 109.47248 * 298.50454 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.1992 2.1888 -1.0843 5 6 2.6638 3.3986 -0.7088 6 6 2.9727 4.5174 -1.6023 7 8 3.3875 5.5649 -1.1443 8 8 2.7973 4.3858 -2.9334 9 6 2.7946 3.3975 0.6513 10 6 2.3886 2.1296 1.0944 11 16 2.3515 1.5667 2.7636 12 8 1.0111 1.7213 3.2094 13 8 3.0385 0.3229 2.7830 14 7 3.2657 2.6199 3.6566 15 6 4.7209 2.4600 3.7136 16 6 5.3643 3.3442 2.6767 17 1 4.7506 3.9630 2.0387 18 6 6.7363 3.3633 2.5424 19 7 7.4836 2.6102 3.3195 20 14 7.5339 4.4588 1.2566 21 1 7.1800 5.8757 1.5252 22 1 9.0090 4.2978 1.3153 23 1 7.0467 4.0742 -0.0924 24 6 2.6193 3.7113 4.3896 25 6 2.7920 3.4881 5.8933 26 6 3.2624 5.0420 3.9942 27 1 -0.3634 -1.0239 0.0876 28 1 -0.3634 0.5878 0.8429 29 1 -0.3633 0.4361 -0.9306 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.0144 5.1515 -3.4826 33 1 3.1393 4.2155 1.2665 34 1 5.0788 2.7417 4.7038 35 1 4.9802 1.4200 3.5157 36 1 8.4489 2.6233 3.2249 37 1 1.5573 3.7342 4.1451 38 1 3.8540 3.4652 6.1377 39 1 2.3106 4.2999 6.4387 40 1 2.3338 2.5400 6.1749 41 1 3.1628 5.1885 2.9187 42 1 2.7639 5.8567 4.5197 43 1 4.3188 5.0291 4.2628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605883249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:15 Heat of formation + Delta-G solvation = -178.159316 kcal Electronic energy + Delta-G solvation = -30491.069810 eV Core-core repulsion = 26243.293952 eV Total energy + Delta-G solvation = -4247.775858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.16610 -41.15994 -38.59064 -38.25599 -37.39493 -37.03333 -35.57956 -34.81166 -34.41632 -32.27812 -30.68048 -28.92269 -27.85786 -26.29947 -24.77846 -24.54652 -23.11586 -22.48235 -21.55434 -20.31501 -19.41117 -18.89753 -18.61055 -18.45949 -18.04758 -17.15089 -17.07276 -16.73892 -16.51061 -16.34646 -15.71093 -15.43009 -15.05739 -14.85214 -14.72250 -14.53811 -14.40670 -14.01632 -13.74362 -13.65807 -13.46309 -13.28208 -13.07077 -12.96107 -12.86395 -12.73217 -12.71582 -12.65356 -12.59225 -12.33354 -12.23581 -12.18100 -12.13682 -12.06990 -11.75620 -11.53923 -11.32067 -10.55409 -10.11933 -9.83732 -8.16938 -6.25333 -0.57610 -0.50047 0.41195 1.01261 1.36230 1.38125 1.44576 1.54455 1.76713 2.03878 2.38692 2.55772 3.12220 3.16121 3.43121 3.59358 3.81352 3.87042 4.02032 4.08270 4.16997 4.21430 4.33678 4.38493 4.54887 4.61769 4.70769 4.84919 4.87592 4.94150 4.96396 5.12772 5.15342 5.19618 5.21577 5.29428 5.39624 5.43804 5.57892 5.71209 5.82877 5.96271 6.12456 6.69030 6.84164 7.42407 8.91261 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008147 B = 0.007013 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.841732 B = 3991.660177 C = 5825.505407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C 0.171 3.829 4 O -0.136 6.136 5 C -0.101 4.101 6 C 0.583 3.417 7 O -0.515 6.515 8 O -0.493 6.493 9 C -0.014 4.014 10 C -0.781 4.781 11 S 2.723 3.277 12 O -0.972 6.972 13 O -0.981 6.981 14 N -0.978 5.978 15 C 0.260 3.740 16 C -0.533 4.533 17 H 0.075 0.925 18 C 0.023 3.977 19 N -0.922 5.922 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.134 3.866 25 C -0.155 4.155 26 C -0.152 4.152 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.442 0.558 33 H 0.176 0.824 34 H 0.038 0.962 35 H 0.022 0.978 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 0.256 -7.212 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.126 4.126 3 C 0.113 3.887 4 O -0.030 6.030 5 C -0.150 4.150 6 C 0.428 3.572 7 O -0.406 6.406 8 O -0.308 6.308 9 C -0.034 4.034 10 C -0.866 4.866 11 S 2.811 3.189 12 O -0.962 6.962 13 O -0.971 6.971 14 N -0.819 5.819 15 C 0.137 3.863 16 C -0.572 4.572 17 H 0.092 0.908 18 C -0.177 4.177 19 N -0.562 5.562 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.029 3.971 25 C -0.214 4.214 26 C -0.211 4.211 27 H 0.126 0.874 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.155 0.845 31 H 0.124 0.876 32 H 0.305 0.695 33 H 0.194 0.806 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.095 -0.603 -6.895 15.703 hybrid contribution 1.641 1.596 -1.367 2.666 sum -12.454 0.993 -8.262 14.979 Atomic orbital electron populations 1.21955 0.90239 1.05549 1.03699 1.21138 0.99472 0.83828 1.08164 1.23318 0.89294 0.94126 0.81968 1.84046 1.63388 1.21084 1.34448 1.20815 1.15056 0.86123 0.92992 1.18502 0.73582 0.83697 0.81458 1.91022 1.43855 1.27977 1.77750 1.84595 1.80233 1.49051 1.16893 1.21803 0.92351 0.96248 0.93002 1.32033 1.23620 1.05217 1.25779 1.00844 0.72455 0.73114 0.72479 1.93518 1.35638 1.86744 1.80349 1.93527 1.75017 1.41683 1.86901 1.57317 1.18246 1.45740 1.60559 1.18794 0.73405 0.96266 0.97820 1.21942 0.91756 1.24874 1.18653 0.90751 1.25497 0.98078 0.96696 0.97405 1.70006 1.05619 1.40542 1.40008 0.86002 0.77699 0.80360 0.80054 1.19181 1.20874 1.20769 1.21101 0.96721 0.86499 0.92773 1.22109 1.02449 1.02644 0.94187 1.22157 1.02139 0.95790 1.00966 0.87401 0.92671 0.90120 0.84542 0.87572 0.69454 0.80647 0.94413 0.96023 0.92666 0.88155 0.92892 0.88906 0.92777 0.93584 0.89865 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.09 -2.10 6.31 29.85 0.19 -1.91 16 3 C 0.17 5.40 6.57 24.98 0.16 5.57 16 4 O -0.14 -4.30 10.67 -4.86 -0.05 -4.35 16 5 C -0.10 -3.46 7.18 24.04 0.17 -3.29 16 6 C 0.58 17.97 8.30 69.97 0.58 18.55 16 7 O -0.51 -18.30 17.65 19.45 0.34 -17.96 16 8 O -0.49 -10.68 13.44 -56.76 -0.76 -11.44 16 9 C -0.01 -0.53 9.48 22.40 0.21 -0.32 16 10 C -0.78 -28.75 6.11 22.07 0.13 -28.61 16 11 S 2.72 106.51 5.39 -56.49 -0.30 106.20 16 12 O -0.97 -37.06 16.46 -128.00 -2.11 -39.16 16 13 O -0.98 -43.11 15.40 -128.00 -1.97 -45.08 16 14 N -0.98 -39.20 2.59 -497.43 -1.29 -40.48 16 15 C 0.26 12.56 4.88 85.63 0.42 12.97 16 16 C -0.53 -27.07 7.46 25.60 0.19 -26.88 16 17 H 0.07 3.59 4.20 -2.91 -0.01 3.58 16 18 C 0.02 1.25 5.46 84.65 0.46 1.71 16 19 N -0.92 -52.56 13.29 21.45 0.28 -52.27 16 20 Si 0.93 43.56 29.54 68.60 2.03 45.58 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 C 0.13 4.46 3.22 44.99 0.15 4.60 16 25 C -0.15 -4.54 9.26 71.98 0.67 -3.87 16 26 C -0.15 -4.91 8.12 71.98 0.58 -4.33 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.14 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.11 2.75 6.48 -2.39 -0.02 2.74 16 32 H 0.44 4.50 9.11 -74.06 -0.67 3.83 16 33 H 0.18 6.67 4.59 -2.91 -0.01 6.66 16 34 H 0.04 1.89 6.76 -2.39 -0.02 1.87 16 35 H 0.02 1.18 7.01 -2.39 -0.02 1.16 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.10 3.04 6.85 -2.39 -0.02 3.02 16 38 H 0.05 1.71 6.91 -2.39 -0.02 1.69 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.53 5.84 -2.39 -0.01 1.51 16 42 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.06 2.24 6.84 -2.39 -0.02 2.22 16 Total: -1.00 -70.75 367.87 1.21 -69.55 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.40 Total: 17.39 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.63 Total: -27.97 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -1.00 Total: -92.76 kcal Atomic # 8 Polarization: -113.45 SS G_CDS: -4.55 Total: -118.00 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 106.51 SS G_CDS: -0.30 Total: 106.20 kcal Total: -70.75 1.21 -69.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605883249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.612 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds