Wall clock time and date at job start Wed Apr 1 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.50697 * 109.47267 * 70.56663 * 13 12 11 15 15 N 1.32439 * 118.53094 * 269.73169 * 14 13 12 16 16 C 1.32319 * 121.53068 * 179.75368 * 15 14 13 17 17 O 1.35278 * 120.87686 * 180.25442 * 16 15 14 18 18 C 1.41597 * 118.25391 * 0.50134 * 16 15 14 19 19 C 1.40092 * 121.88804 * 179.75777 * 18 16 15 20 20 C 1.36061 * 119.86783 * 179.97438 * 19 18 16 21 21 C 1.40459 * 120.77785 * 0.04021 * 20 19 18 22 22 C 1.47882 * 119.72209 * 179.97438 * 21 20 19 23 23 O 1.21451 * 119.99880 * 180.02562 * 22 21 20 24 24 O 1.34691 * 120.00180 * 0.02562 * 22 21 20 25 25 C 1.38606 * 120.55587 * 359.97438 * 21 20 19 26 26 C 1.40123 * 119.36042 * 0.02562 * 25 21 20 27 27 N 1.31106 * 118.53911 * 90.00036 * 14 13 12 28 28 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 31 31 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 32 32 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 33 33 H 1.08998 * 109.47175 * 190.56715 * 13 12 11 34 34 H 1.09003 * 109.46828 * 310.56248 * 13 12 11 35 35 H 0.96702 * 114.00524 * 270.25294 * 17 16 15 36 36 H 1.07996 * 120.06495 * 359.95716 * 19 18 16 37 37 H 1.07998 * 119.61037 * 180.02562 * 20 19 18 38 38 H 0.96703 * 116.99920 * 179.97438 * 24 22 21 39 39 H 1.07998 * 120.32018 * 180.02562 * 25 21 20 40 40 H 1.09000 * 113.75922 * 221.08463 * 28 12 11 41 41 H 1.08996 * 113.85941 * 89.73133 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8800 -5.2909 3.2085 15 7 0.6574 -4.3984 4.1614 16 6 -0.2092 -4.6270 5.1348 17 8 -0.4301 -3.7039 6.0987 18 6 -0.8955 -5.8655 5.1441 19 6 -1.8251 -6.1890 6.1410 20 6 -2.4615 -7.3912 6.1096 21 6 -2.1978 -8.3176 5.0873 22 6 -2.9025 -9.6177 5.0762 23 8 -2.6780 -10.4226 4.1949 24 8 -3.7933 -9.9091 6.0435 25 6 -1.2826 -8.0235 4.0887 26 6 -0.6188 -6.7896 4.1069 27 7 0.2751 -6.4532 3.1653 28 6 2.1610 -3.7400 0.0456 29 1 -0.4850 0.8401 0.0004 30 1 -0.3473 -1.7968 -1.0267 31 1 1.3280 -2.4980 2.2139 32 1 -0.3216 -2.8297 1.5251 33 1 2.3468 -5.8748 1.7727 34 1 2.6408 -4.2923 2.5327 35 1 0.1517 -3.7897 6.8664 36 1 -2.0360 -5.4857 6.9329 37 1 -3.1777 -7.6361 6.8800 38 1 -4.2291 -10.7710 5.9939 39 1 -1.0831 -8.7384 3.3043 40 1 2.2043 -4.2880 -0.8956 41 1 3.1458 -3.5468 0.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:55 Heat of formation + Delta-G solvation = -61.152532 kcal Electronic energy + Delta-G solvation = -29321.235074 eV Core-core repulsion = 24975.381810 eV Total energy + Delta-G solvation = -4345.853263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77605 -40.56609 -39.05445 -38.18026 -37.61623 -36.52807 -34.32064 -33.45381 -32.14837 -32.01779 -31.04806 -28.81128 -26.40648 -26.01370 -25.06800 -23.92613 -23.12641 -22.09143 -21.71026 -19.36863 -18.96687 -18.52328 -18.39500 -17.99456 -17.24777 -16.84784 -16.19566 -16.02713 -15.60938 -15.17978 -15.01250 -14.59025 -14.49882 -14.15085 -14.12895 -13.96211 -13.74280 -13.32064 -12.75756 -12.57754 -12.39144 -12.12933 -12.00865 -11.92842 -11.90234 -11.42683 -11.13377 -11.11865 -11.02669 -10.89449 -10.73680 -10.55662 -10.34107 -10.01889 -9.71263 -9.42727 -9.29045 -8.67712 -8.58201 -8.20292 -7.81965 -6.22514 -4.32387 -0.32471 0.15330 1.37438 1.86010 2.45073 2.76545 3.01596 3.23641 3.28878 3.31108 3.64977 3.81766 4.01371 4.23744 4.28714 4.43654 4.48730 4.64204 4.87096 4.91542 5.03845 5.05055 5.28913 5.43741 5.65760 5.69938 5.73542 5.74282 5.92777 5.99661 6.03983 6.06958 6.15569 6.32349 6.47978 6.69011 6.79359 7.06850 7.09549 7.12484 7.37927 7.41966 7.78826 7.89979 8.01090 8.03060 8.68813 9.37274 9.64490 10.83612 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002539 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.715597 B =11024.653394 C =11679.113966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.244 3.756 10 O -0.572 6.572 11 C -0.006 4.006 12 N -0.473 5.473 13 C 0.081 3.919 14 C 0.375 3.625 15 N -0.517 5.517 16 C 0.404 3.596 17 O -0.464 6.464 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.090 4.090 21 C -0.090 4.090 22 C 0.528 3.472 23 O -0.504 6.504 24 O -0.509 6.509 25 C -0.021 4.021 26 C 0.163 3.837 27 N -0.487 5.487 28 C 0.013 3.987 29 H 0.271 0.729 30 H 0.388 0.612 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.417 0.583 39 H 0.159 0.841 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -14.831 17.551 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.203 3.797 10 O -0.383 6.383 11 C -0.135 4.135 12 N -0.197 5.197 13 C -0.049 4.049 14 C 0.106 3.894 15 N -0.242 5.242 16 C 0.202 3.798 17 O -0.272 6.272 18 C -0.167 4.167 19 C -0.092 4.092 20 C -0.108 4.108 21 C -0.094 4.094 22 C 0.372 3.628 23 O -0.392 6.392 24 O -0.321 6.321 25 C -0.040 4.040 26 C 0.035 3.965 27 N -0.202 5.202 28 C -0.115 4.115 29 H 0.081 0.919 30 H 0.242 0.758 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.270 0.730 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.276 0.724 39 H 0.177 0.823 40 H 0.098 0.902 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.829 -15.294 15.878 22.376 hybrid contribution 0.072 1.205 1.634 2.032 sum -3.757 -14.089 17.513 22.788 Atomic orbital electron populations 1.69425 1.06106 1.27857 1.50283 1.25060 0.94972 0.99630 0.93440 0.86473 0.79545 0.82134 0.78790 1.21083 1.20053 1.19975 1.21576 0.93608 0.90603 1.51786 0.91636 1.19752 0.85384 0.90755 0.83839 1.86042 1.47028 1.49560 1.55650 1.24772 1.00610 0.86416 1.01742 1.68798 1.25514 1.17627 1.07739 1.21530 0.92149 1.01518 0.89713 1.22944 0.92203 0.83539 0.90685 1.67816 1.18353 1.34017 1.03988 1.19636 0.87801 0.84238 0.88171 1.84685 1.60376 1.52365 1.29778 1.19793 1.02014 0.95434 0.99424 1.20805 0.94107 0.96740 0.97502 1.21049 0.99396 0.92716 0.97664 1.19034 0.99372 0.92833 0.98178 1.20761 0.76841 0.86717 0.78502 1.90933 1.62700 1.49341 1.36227 1.84530 1.53721 1.43383 1.50497 1.21185 0.91503 0.94465 0.96801 1.18722 0.94099 0.93625 0.90059 1.68672 1.08207 1.20112 1.23250 1.24157 0.94781 0.96571 0.96003 0.91913 0.75815 0.91232 0.91627 0.88467 0.91413 0.72975 0.83620 0.83592 0.72363 0.82297 0.90228 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 11.20 55.43 0.62 -23.87 16 2 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.40 8.61 -34.44 -0.30 -14.69 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 6.27 1.40 -90.83 -0.13 6.14 16 10 O -0.57 -15.78 13.48 -35.23 -0.48 -16.26 16 11 C -0.01 -0.16 6.66 -2.63 -0.02 -0.17 16 12 N -0.47 -10.18 6.25 -239.46 -1.50 -11.68 16 13 C 0.08 1.43 5.23 -4.98 -0.03 1.41 16 14 C 0.37 6.57 6.74 -157.23 -1.06 5.51 16 15 N -0.52 -8.74 10.03 -10.38 -0.10 -8.85 16 16 C 0.40 5.55 7.89 -16.06 -0.13 5.43 16 17 O -0.46 -4.92 12.91 -17.53 -0.23 -5.15 16 18 C -0.16 -2.01 5.76 -106.62 -0.61 -2.63 16 19 C -0.07 -0.64 9.58 -39.67 -0.38 -1.02 16 20 C -0.09 -0.74 9.52 -39.53 -0.38 -1.11 16 21 C -0.09 -0.91 5.87 -104.98 -0.62 -1.52 16 22 C 0.53 5.03 8.27 34.68 0.29 5.32 16 23 O -0.50 -6.31 17.09 -19.23 -0.33 -6.64 16 24 O -0.51 -3.04 12.64 -40.47 -0.51 -3.55 16 25 C -0.02 -0.25 9.58 -38.74 -0.37 -0.63 16 26 C 0.16 2.33 6.61 -84.86 -0.56 1.77 16 27 N -0.49 -8.20 10.32 -8.81 -0.09 -8.29 16 28 C 0.01 0.29 7.36 -2.76 -0.02 0.27 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 10.89 6.60 45.56 0.30 11.19 16 31 H 0.07 1.69 7.74 -51.93 -0.40 1.28 16 32 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.15 7.70 -51.93 -0.40 0.76 16 35 H 0.41 1.88 9.06 45.56 0.41 2.30 16 36 H 0.15 0.90 7.70 -52.49 -0.40 0.50 16 37 H 0.15 0.83 7.57 -52.49 -0.40 0.43 16 38 H 0.42 0.65 9.11 45.56 0.42 1.07 16 39 H 0.16 1.95 7.61 -52.49 -0.40 1.55 16 40 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.07 1.37 7.75 -51.93 -0.40 0.96 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -34.65 360.63 -8.69 -43.34 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -2.09 Total: 14.07 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -4.40 Total: 5.87 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -1.07 Total: -52.69 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.54 Total: -31.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.65 -8.69 -43.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.808 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds