Wall clock time and date at job start Wed Apr 1 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.50697 * 109.47267 * 70.56663 * 13 12 11 15 15 N 1.32439 * 118.53094 * 269.73169 * 14 13 12 16 16 C 1.32319 * 121.53068 * 179.75368 * 15 14 13 17 17 O 1.35278 * 120.87686 * 180.25442 * 16 15 14 18 18 C 1.41597 * 118.25391 * 0.50134 * 16 15 14 19 19 C 1.40092 * 121.88804 * 179.75777 * 18 16 15 20 20 C 1.36061 * 119.86783 * 179.97438 * 19 18 16 21 21 C 1.40459 * 120.77785 * 0.04021 * 20 19 18 22 22 C 1.47882 * 119.72209 * 179.97438 * 21 20 19 23 23 O 1.21451 * 119.99880 * 180.02562 * 22 21 20 24 24 O 1.34691 * 120.00180 * 0.02562 * 22 21 20 25 25 C 1.38606 * 120.55587 * 359.97438 * 21 20 19 26 26 C 1.40123 * 119.36042 * 0.02562 * 25 21 20 27 27 N 1.31106 * 118.53911 * 90.00036 * 14 13 12 28 28 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 31 31 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 32 32 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 33 33 H 1.08998 * 109.47175 * 190.56715 * 13 12 11 34 34 H 1.09003 * 109.46828 * 310.56248 * 13 12 11 35 35 H 0.96702 * 114.00524 * 270.25294 * 17 16 15 36 36 H 1.07996 * 120.06495 * 359.95716 * 19 18 16 37 37 H 1.07998 * 119.61037 * 180.02562 * 20 19 18 38 38 H 0.96703 * 116.99920 * 179.97438 * 24 22 21 39 39 H 1.07998 * 120.32018 * 180.02562 * 25 21 20 40 40 H 1.09000 * 113.75922 * 221.08463 * 28 12 11 41 41 H 1.08996 * 113.85941 * 89.73133 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8800 -5.2909 3.2085 15 7 0.6574 -4.3984 4.1614 16 6 -0.2092 -4.6270 5.1348 17 8 -0.4301 -3.7039 6.0987 18 6 -0.8955 -5.8655 5.1441 19 6 -1.8251 -6.1890 6.1410 20 6 -2.4615 -7.3912 6.1096 21 6 -2.1978 -8.3176 5.0873 22 6 -2.9025 -9.6177 5.0762 23 8 -2.6780 -10.4226 4.1949 24 8 -3.7933 -9.9091 6.0435 25 6 -1.2826 -8.0235 4.0887 26 6 -0.6188 -6.7896 4.1069 27 7 0.2751 -6.4532 3.1653 28 6 2.1610 -3.7400 0.0456 29 1 -0.4850 0.8401 0.0004 30 1 -0.3473 -1.7968 -1.0267 31 1 1.3280 -2.4980 2.2139 32 1 -0.3216 -2.8297 1.5251 33 1 2.3468 -5.8748 1.7727 34 1 2.6408 -4.2923 2.5327 35 1 0.1517 -3.7897 6.8664 36 1 -2.0360 -5.4857 6.9329 37 1 -3.1777 -7.6361 6.8800 38 1 -4.2291 -10.7710 5.9939 39 1 -1.0831 -8.7384 3.3043 40 1 2.2043 -4.2880 -0.8956 41 1 3.1458 -3.5468 0.4708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:54 Heat of formation + Delta-G solvation = -94.086275 kcal Electronic energy + Delta-G solvation = -29322.663188 eV Core-core repulsion = 24975.381810 eV Total energy + Delta-G solvation = -4347.281378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.77875 -41.36080 -40.75108 -39.04974 -38.65499 -37.20024 -36.23005 -34.47356 -34.12405 -33.13932 -32.14729 -30.21403 -28.02213 -27.14312 -26.83390 -25.33778 -24.05964 -23.23043 -22.78959 -20.54616 -20.29305 -19.87262 -19.22815 -19.19289 -18.76852 -17.69716 -17.28933 -17.18666 -16.83744 -16.79571 -16.36198 -16.07731 -15.73998 -15.58023 -15.28013 -15.13778 -14.83626 -14.25223 -14.09741 -13.93170 -13.75799 -13.55318 -13.36839 -13.28258 -12.94185 -12.83019 -12.66823 -12.58836 -12.54744 -12.25243 -12.05034 -12.00429 -11.93545 -11.65126 -11.21695 -10.67672 -10.59013 -10.52045 -10.16940 -9.65544 -9.52457 -8.23229 -6.41293 -1.24191 -0.80361 0.42358 1.05710 1.43714 1.45126 1.53297 1.76433 1.86750 2.06584 2.38364 2.60861 2.75574 2.97510 3.04712 3.20496 3.35271 3.61732 3.70788 3.81605 3.98072 4.01894 4.11157 4.20742 4.31635 4.42221 4.47301 4.58841 4.62851 4.69497 4.88144 4.93273 4.94766 5.05286 5.10670 5.34100 5.37272 5.38547 5.46320 5.74476 5.77090 5.98126 6.19392 6.40917 6.64147 6.85411 6.88853 7.31369 7.48366 8.81888 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002539 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.715597 B =11024.653394 C =11679.113966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.024 3.976 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.217 3.783 10 O -0.585 6.585 11 C 0.015 3.985 12 N -0.481 5.481 13 C 0.084 3.916 14 C 0.354 3.646 15 N -0.554 5.554 16 C 0.410 3.590 17 O -0.464 6.464 18 C -0.164 4.164 19 C -0.059 4.059 20 C -0.071 4.071 21 C -0.081 4.081 22 C 0.538 3.462 23 O -0.539 6.539 24 O -0.492 6.492 25 C -0.042 4.042 26 C 0.137 3.863 27 N -0.510 5.510 28 C 0.025 3.975 29 H 0.272 0.728 30 H 0.381 0.619 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.435 0.565 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.439 0.561 39 H 0.147 0.853 40 H 0.083 0.917 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -15.175 20.421 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.176 4.176 3 Si 0.794 3.206 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.176 3.824 10 O -0.395 6.395 11 C -0.115 4.115 12 N -0.205 5.205 13 C -0.045 4.045 14 C 0.085 3.915 15 N -0.279 5.279 16 C 0.208 3.792 17 O -0.276 6.276 18 C -0.170 4.170 19 C -0.079 4.079 20 C -0.088 4.088 21 C -0.085 4.085 22 C 0.382 3.618 23 O -0.430 6.430 24 O -0.306 6.306 25 C -0.061 4.061 26 C 0.011 3.989 27 N -0.227 5.227 28 C -0.103 4.103 29 H 0.082 0.918 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.301 0.699 36 H 0.200 0.800 37 H 0.202 0.798 38 H 0.302 0.698 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.474 -15.678 18.805 24.889 hybrid contribution 0.097 1.176 0.938 1.507 sum -4.376 -14.502 19.743 24.885 Atomic orbital electron populations 1.69528 1.07375 1.28609 1.50661 1.25868 0.95785 1.02939 0.92968 0.85441 0.78273 0.77922 0.78983 1.20801 1.19303 1.19496 1.21869 0.93977 0.91515 1.52193 0.91209 1.20174 0.85863 0.92307 0.84099 1.86027 1.47517 1.49265 1.56712 1.24354 0.98209 0.88203 1.00685 1.68642 1.26414 1.16161 1.09239 1.21495 0.92362 1.01750 0.88924 1.22678 0.93181 0.84321 0.91333 1.67745 1.20414 1.34609 1.05182 1.19825 0.86727 0.84767 0.87915 1.84643 1.61105 1.51601 1.30210 1.19963 1.02639 0.94575 0.99859 1.21214 0.92245 0.97546 0.96919 1.21468 0.98777 0.91447 0.97141 1.19237 0.98055 0.93568 0.97630 1.20597 0.76829 0.85967 0.78413 1.90935 1.63954 1.50333 1.37820 1.84469 1.52525 1.45036 1.48569 1.21104 0.93057 0.93992 0.97979 1.18984 0.94463 0.94852 0.90594 1.68565 1.09258 1.20096 1.24737 1.24098 0.95086 0.94604 0.96526 0.91829 0.76647 0.91826 0.94940 0.86844 0.90858 0.69925 0.79984 0.79758 0.69791 0.83479 0.89871 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.39 11.20 21.45 0.24 -51.15 16 2 C 0.02 1.29 5.40 84.66 0.46 1.75 16 3 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -30.22 8.61 25.60 0.22 -30.00 16 8 H 0.07 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.22 11.40 1.40 -10.89 -0.02 11.38 16 10 O -0.58 -33.45 13.48 -148.98 -2.01 -35.46 16 11 C 0.01 0.75 6.66 86.37 0.58 1.33 16 12 N -0.48 -21.26 6.25 -914.73 -5.72 -26.98 16 13 C 0.08 3.06 5.23 85.56 0.45 3.51 16 14 C 0.35 12.82 6.74 138.76 0.94 13.75 16 15 N -0.55 -19.07 10.03 -299.81 -3.01 -22.08 16 16 C 0.41 10.96 7.89 85.45 0.67 11.64 16 17 O -0.46 -8.90 12.91 -85.63 -1.11 -10.00 16 18 C -0.16 -3.92 5.76 -21.16 -0.12 -4.04 16 19 C -0.06 -0.84 9.58 22.21 0.21 -0.63 16 20 C -0.07 -0.87 9.52 22.30 0.21 -0.66 16 21 C -0.08 -1.46 5.87 -20.09 -0.12 -1.58 16 22 C 0.54 9.05 8.27 70.38 0.58 9.63 16 23 O -0.54 -13.09 17.09 20.00 0.34 -12.74 16 24 O -0.49 -3.96 12.64 -56.01 -0.71 -4.67 16 25 C -0.04 -1.05 9.58 22.82 0.22 -0.83 16 26 C 0.14 3.98 6.61 40.09 0.26 4.25 16 27 N -0.51 -17.86 10.32 -181.80 -1.88 -19.74 16 28 C 0.02 1.10 7.36 86.41 0.64 1.73 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.38 22.33 6.60 -74.06 -0.49 21.85 16 31 H 0.06 3.20 7.74 -2.39 -0.02 3.18 16 32 H 0.03 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.07 2.54 7.70 -2.39 -0.02 2.52 16 35 H 0.44 2.86 9.06 -74.06 -0.67 2.19 16 36 H 0.18 1.28 7.70 -2.91 -0.02 1.26 16 37 H 0.19 0.95 7.57 -2.91 -0.02 0.92 16 38 H 0.44 -0.26 9.11 -74.06 -0.67 -0.94 16 39 H 0.15 3.87 7.61 -2.91 -0.02 3.85 16 40 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.09 3.53 7.75 -2.39 -0.02 3.51 16 Total: -1.00 -78.29 360.63 -7.32 -85.61 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.69 Total: 31.73 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.18 Total: 21.24 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -10.36 Total: -119.95 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -3.48 Total: -62.88 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -78.29 -7.32 -85.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds