Wall clock time and date at job start Wed Apr 1 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48506 * 109.47105 * 264.66509 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.66405 * 3 2 1 6 6 H 1.48503 * 109.47165 * 144.66630 * 3 2 1 7 7 C 1.37873 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99770 * 4.70741 * 7 2 1 9 9 C 1.50694 * 120.00327 * 184.98561 * 7 2 1 10 10 H 1.08993 * 109.47099 * 24.82175 * 9 7 2 11 11 C 1.50701 * 109.47557 * 144.82716 * 9 7 2 12 12 O 1.21279 * 120.00537 * 119.99894 * 11 9 7 13 13 N 1.34780 * 119.99507 * 300.00244 * 11 9 7 14 14 N 1.40102 * 119.99721 * 180.02562 * 13 11 9 15 15 C 1.34780 * 119.99721 * 180.02562 * 14 13 11 16 16 O 1.21582 * 119.99867 * 179.97438 * 15 14 13 17 17 N 1.34771 * 119.99940 * 359.97438 * 15 14 13 18 18 C 1.46508 * 119.99919 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47266 * 180.02562 * 18 17 15 20 20 F 1.39907 * 109.47037 * 59.99952 * 19 18 17 21 21 F 1.39897 * 109.47044 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47101 * 300.00450 * 19 18 17 23 23 C 1.50706 * 109.46942 * 264.82523 * 9 7 2 24 24 C 1.38236 * 119.99842 * 305.00952 * 23 9 7 25 25 C 1.38235 * 119.99754 * 179.80983 * 24 23 9 26 26 C 1.38239 * 119.99940 * 0.40204 * 25 24 23 27 27 C 1.38234 * 120.00038 * 359.85501 * 26 25 24 28 28 C 1.38228 * 119.99904 * 125.28988 * 23 9 7 29 29 H 0.97005 * 119.99741 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00023 * 359.97438 * 13 11 9 31 31 H 0.97000 * 120.00256 * 359.97438 * 14 13 11 32 32 H 0.96998 * 120.00493 * 0.02562 * 17 15 14 33 33 H 1.09005 * 109.46732 * 300.00377 * 18 17 15 34 34 H 1.08994 * 109.46822 * 59.99922 * 18 17 15 35 35 H 1.07998 * 120.00365 * 0.02562 * 24 23 9 36 36 H 1.07998 * 120.00073 * 180.23745 * 25 24 23 37 37 H 1.08002 * 119.99764 * 179.83407 * 26 25 24 38 38 H 1.07999 * 119.99887 * 179.97438 * 27 26 25 39 39 H 1.08002 * 120.00085 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6095 1.9813 -1.3941 5 1 1.3949 2.6826 0.5842 6 1 3.4859 1.4753 0.8097 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0758 9 6 3.5072 -1.1965 0.1139 10 1 3.8355 -0.2839 0.6112 11 6 3.9485 -2.3928 0.9172 12 8 4.6839 -3.2193 0.4201 13 7 3.5257 -2.5443 2.1880 14 7 3.9364 -3.6562 2.9349 15 6 3.5132 -3.8080 4.2055 16 8 3.8692 -4.7731 4.8536 17 7 2.6955 -2.8899 4.7576 18 6 2.2360 -3.0546 6.1390 19 6 1.3262 -1.8840 6.5169 20 9 0.2219 -1.8556 5.6583 21 9 0.8870 -2.0416 7.8357 22 9 2.0372 -0.6847 6.4017 23 6 4.1148 -1.2645 -1.2635 24 6 3.7598 -2.2849 -2.1259 25 6 4.3142 -2.3450 -3.3908 26 6 5.2298 -1.3895 -3.7903 27 6 5.5887 -0.3722 -2.9260 28 6 5.0314 -0.3099 -1.6625 29 1 -0.4850 0.8401 -0.0004 30 1 2.9378 -1.8832 2.5856 31 1 4.5246 -4.3172 2.5374 32 1 2.4112 -2.1201 4.2405 33 1 1.6817 -3.9889 6.2285 34 1 3.0964 -3.0771 6.8078 35 1 3.0468 -3.0331 -1.8127 36 1 4.0340 -3.1400 -4.0659 37 1 5.6649 -1.4381 -4.7776 38 1 6.3044 0.3741 -3.2380 39 1 5.3118 0.4850 -0.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618104462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:18 Heat of formation + Delta-G solvation = -154.947042 kcal Electronic energy + Delta-G solvation = -30258.428044 eV Core-core repulsion = 25366.650805 eV Total energy + Delta-G solvation = -4891.777239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.37953 -47.91313 -47.82664 -40.47010 -39.35165 -38.04464 -35.44289 -35.24006 -33.87507 -31.73908 -30.74520 -30.23449 -29.23884 -27.67144 -23.89746 -23.71265 -22.02707 -21.75071 -21.31274 -20.20984 -19.30436 -18.83685 -18.60946 -17.73848 -17.32577 -17.01804 -16.18297 -15.89415 -15.74617 -15.45676 -14.82288 -14.79786 -14.68365 -14.56053 -14.35912 -14.27493 -14.02092 -14.01061 -13.94993 -13.94375 -13.41620 -13.22302 -12.81209 -12.74094 -12.28836 -12.17499 -12.04024 -11.38838 -11.11754 -11.07451 -10.73450 -10.58024 -10.37875 -10.06201 -9.74408 -9.66421 -9.32817 -8.91633 -8.24056 -8.07420 -7.95227 -6.45746 -4.53284 1.89075 2.07364 2.12727 2.37368 2.69418 2.81993 3.02710 3.12780 3.17999 3.30200 3.40673 3.74176 3.94342 4.07713 4.46560 4.82210 4.84730 4.85933 5.05139 5.44230 5.50088 5.56999 5.69241 5.80888 5.81331 6.11115 6.19277 6.31118 6.47414 6.54335 6.67397 6.73797 7.05409 7.08274 7.14663 7.44716 7.54512 7.67768 7.76539 8.04283 8.25071 8.53870 8.80617 9.10011 10.64262 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003527 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.297857 B = 7937.825322 C = 9365.022521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.089 3.911 3 Si 0.864 3.136 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.031 3.969 10 H 0.080 0.920 11 C 0.540 3.460 12 O -0.550 6.550 13 N -0.531 5.531 14 N -0.524 5.524 15 C 0.723 3.277 16 O -0.581 6.581 17 N -0.745 5.745 18 C 0.099 3.901 19 C 0.446 3.554 20 F -0.172 7.172 21 F -0.174 7.174 22 F -0.177 7.177 23 C -0.031 4.031 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.272 0.728 30 H 0.424 0.576 31 H 0.444 0.556 32 H 0.405 0.595 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -0.602 8.319 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.118 4.118 3 Si 0.690 3.310 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.104 0.896 9 C 0.008 3.992 10 H 0.097 0.903 11 C 0.329 3.671 12 O -0.425 6.425 13 N -0.284 5.284 14 N -0.277 5.277 15 C 0.422 3.578 16 O -0.456 6.456 17 N -0.406 5.406 18 C -0.027 4.027 19 C 0.392 3.608 20 F -0.153 7.153 21 F -0.156 7.156 22 F -0.158 7.158 23 C -0.033 4.033 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.158 4.158 27 C -0.146 4.146 28 C -0.152 4.152 29 H 0.082 0.918 30 H 0.266 0.734 31 H 0.290 0.710 32 H 0.242 0.758 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.895 -1.677 8.544 9.988 hybrid contribution -0.178 1.657 -0.284 1.691 sum 4.717 -0.020 8.260 9.512 Atomic orbital electron populations 1.69852 1.06170 1.27817 1.47005 1.24975 0.94737 0.98786 0.93275 0.87052 0.80151 0.83773 0.79980 1.18933 1.20891 1.18594 1.20535 0.85851 0.95663 1.53964 0.89626 1.18507 0.98694 0.92698 0.89265 0.90279 1.21689 0.77961 0.88765 0.78667 1.90646 1.37142 1.45200 1.69497 1.45264 1.52890 1.18308 1.11979 1.44319 1.53109 1.21437 1.08868 1.15361 0.79252 0.82619 0.80582 1.91019 1.62746 1.31716 1.60096 1.44684 1.53583 1.28457 1.13904 1.22282 0.99175 0.96113 0.85149 1.20546 0.80615 0.84446 0.75232 1.93288 1.55452 1.96699 1.69878 1.93218 1.90306 1.95586 1.36474 1.93241 1.77948 1.49043 1.95613 1.19950 0.92829 0.93757 0.96731 1.20852 0.97927 0.97559 0.92679 1.21047 0.98076 0.98996 0.96547 1.20899 0.99609 0.96148 0.99156 1.20898 1.00656 0.98676 0.94388 1.20970 0.97922 0.99676 0.96674 0.91819 0.73368 0.71023 0.75781 0.86584 0.86664 0.86407 0.87003 0.87215 0.87130 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.99 13.96 55.43 0.77 -22.22 16 2 C 0.09 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.86 18.30 27.23 -169.99 -4.63 13.67 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.01 6.06 56.52 0.34 -4.67 16 7 C -0.52 -12.15 8.06 -34.44 -0.28 -12.43 16 8 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 9 C 0.03 0.64 1.90 -94.08 -0.18 0.46 16 10 H 0.08 1.55 4.87 -51.93 -0.25 1.29 16 11 C 0.54 10.37 7.15 -10.98 -0.08 10.29 16 12 O -0.55 -11.57 15.21 5.56 0.08 -11.49 16 13 N -0.53 -8.53 6.16 31.22 0.19 -8.34 16 14 N -0.52 -7.86 6.26 27.63 0.17 -7.68 16 15 C 0.72 10.35 8.68 -86.92 -0.75 9.60 16 16 O -0.58 -9.64 17.18 5.29 0.09 -9.55 16 17 N -0.75 -8.66 5.38 -65.22 -0.35 -9.01 16 18 C 0.10 0.91 5.64 -4.04 -0.02 0.89 16 19 C 0.45 4.33 3.11 37.16 0.12 4.45 16 20 F -0.17 -2.01 17.18 2.25 0.04 -1.97 16 21 F -0.17 -1.65 17.32 2.25 0.04 -1.61 16 22 F -0.18 -1.88 17.18 2.25 0.04 -1.85 16 23 C -0.03 -0.64 4.11 -104.62 -0.43 -1.07 16 24 C -0.07 -1.45 8.25 -39.58 -0.33 -1.78 16 25 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 26 C -0.14 -2.29 10.05 -39.58 -0.40 -2.68 16 27 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 28 C -0.13 -2.51 9.50 -39.59 -0.38 -2.89 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.42 6.21 6.59 -182.60 -1.20 5.01 16 31 H 0.44 6.77 8.10 -182.60 -1.48 5.29 16 32 H 0.41 4.57 6.28 -40.82 -0.26 4.31 16 33 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.12 2.45 7.93 -52.49 -0.42 2.04 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.87 7.95 -52.49 -0.42 1.46 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -29.09 353.88 -7.59 -36.68 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -5.76 Total: 16.36 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.62 Total: 1.68 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.79 Total: -47.25 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.12 Total: -5.43 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.63 Total: 13.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.09 -7.59 -36.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618104462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.268 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds