Wall clock time and date at job start Wed Apr 1 2020 04:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48506 * 109.47105 * 264.66509 * 3 2 1 5 5 H 1.48502 * 109.47297 * 24.66405 * 3 2 1 6 6 H 1.48503 * 109.47165 * 144.66630 * 3 2 1 7 7 C 1.37873 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99770 * 4.70741 * 7 2 1 9 9 C 1.50694 * 120.00327 * 184.98561 * 7 2 1 10 10 H 1.08993 * 109.47099 * 24.82175 * 9 7 2 11 11 C 1.50701 * 109.47557 * 144.82716 * 9 7 2 12 12 O 1.21279 * 120.00537 * 119.99894 * 11 9 7 13 13 N 1.34780 * 119.99507 * 300.00244 * 11 9 7 14 14 N 1.40102 * 119.99721 * 180.02562 * 13 11 9 15 15 C 1.34780 * 119.99721 * 180.02562 * 14 13 11 16 16 O 1.21582 * 119.99867 * 179.97438 * 15 14 13 17 17 N 1.34771 * 119.99940 * 359.97438 * 15 14 13 18 18 C 1.46508 * 119.99919 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47266 * 180.02562 * 18 17 15 20 20 F 1.39907 * 109.47037 * 59.99952 * 19 18 17 21 21 F 1.39897 * 109.47044 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47101 * 300.00450 * 19 18 17 23 23 C 1.50706 * 109.46942 * 264.82523 * 9 7 2 24 24 C 1.38236 * 119.99842 * 305.00952 * 23 9 7 25 25 C 1.38235 * 119.99754 * 179.80983 * 24 23 9 26 26 C 1.38239 * 119.99940 * 0.40204 * 25 24 23 27 27 C 1.38234 * 120.00038 * 359.85501 * 26 25 24 28 28 C 1.38228 * 119.99904 * 125.28988 * 23 9 7 29 29 H 0.97005 * 119.99741 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00023 * 359.97438 * 13 11 9 31 31 H 0.97000 * 120.00256 * 359.97438 * 14 13 11 32 32 H 0.96998 * 120.00493 * 0.02562 * 17 15 14 33 33 H 1.09005 * 109.46732 * 300.00377 * 18 17 15 34 34 H 1.08994 * 109.46822 * 59.99922 * 18 17 15 35 35 H 1.07998 * 120.00365 * 0.02562 * 24 23 9 36 36 H 1.07998 * 120.00073 * 180.23745 * 25 24 23 37 37 H 1.08002 * 119.99764 * 179.83407 * 26 25 24 38 38 H 1.07999 * 119.99887 * 179.97438 * 27 26 25 39 39 H 1.08002 * 120.00085 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6095 1.9813 -1.3941 5 1 1.3949 2.6826 0.5842 6 1 3.4859 1.4753 0.8097 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1278 -0.0758 9 6 3.5072 -1.1965 0.1139 10 1 3.8355 -0.2839 0.6112 11 6 3.9485 -2.3928 0.9172 12 8 4.6839 -3.2193 0.4201 13 7 3.5257 -2.5443 2.1880 14 7 3.9364 -3.6562 2.9349 15 6 3.5132 -3.8080 4.2055 16 8 3.8692 -4.7731 4.8536 17 7 2.6955 -2.8899 4.7576 18 6 2.2360 -3.0546 6.1390 19 6 1.3262 -1.8840 6.5169 20 9 0.2219 -1.8556 5.6583 21 9 0.8870 -2.0416 7.8357 22 9 2.0372 -0.6847 6.4017 23 6 4.1148 -1.2645 -1.2635 24 6 3.7598 -2.2849 -2.1259 25 6 4.3142 -2.3450 -3.3908 26 6 5.2298 -1.3895 -3.7903 27 6 5.5887 -0.3722 -2.9260 28 6 5.0314 -0.3099 -1.6625 29 1 -0.4850 0.8401 -0.0004 30 1 2.9378 -1.8832 2.5856 31 1 4.5246 -4.3172 2.5374 32 1 2.4112 -2.1201 4.2405 33 1 1.6817 -3.9889 6.2285 34 1 3.0964 -3.0771 6.8078 35 1 3.0468 -3.0331 -1.8127 36 1 4.0340 -3.1400 -4.0659 37 1 5.6649 -1.4381 -4.7776 38 1 6.3044 0.3741 -3.2380 39 1 5.3118 0.4850 -0.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618104462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:17 Heat of formation + Delta-G solvation = -174.283520 kcal Electronic energy + Delta-G solvation = -30259.266536 eV Core-core repulsion = 25366.650805 eV Total energy + Delta-G solvation = -4892.615731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.21112 -48.72175 -48.69455 -41.74433 -40.75168 -39.43338 -36.80150 -36.26895 -35.57837 -33.43726 -32.04898 -31.60904 -30.20458 -29.19974 -25.59454 -24.61368 -23.42426 -23.10036 -22.45991 -21.54483 -20.53624 -19.66947 -19.49508 -19.14526 -18.87329 -18.26251 -17.53598 -17.08453 -17.02593 -16.63452 -16.31751 -16.00383 -15.77730 -15.65074 -15.50653 -15.32721 -15.24773 -15.10979 -14.85149 -14.83557 -14.80892 -14.41533 -14.39292 -14.11911 -13.80231 -13.48699 -13.02597 -12.99748 -12.71783 -12.47727 -12.02847 -12.01139 -11.92128 -11.62222 -11.43330 -10.99195 -10.69759 -10.67600 -9.62737 -9.41290 -9.37235 -8.33431 -6.44067 0.56010 0.69275 0.87395 1.34821 1.38118 1.44987 1.47705 1.52027 1.73157 1.90000 2.31431 2.60938 2.93706 2.95132 3.10083 3.14684 3.61936 4.07298 4.12071 4.17463 4.20441 4.26845 4.34057 4.41397 4.56368 4.82721 4.82789 4.91041 5.14880 5.26876 5.33563 5.36449 5.39086 5.71520 5.76021 5.93977 6.17798 6.24004 6.32851 6.44116 6.62079 7.03021 7.21948 7.38255 8.79750 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003527 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.297857 B = 7937.825322 C = 9365.022521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.043 3.957 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.225 1.225 7 C -0.508 4.508 8 H 0.044 0.956 9 C 0.035 3.965 10 H 0.092 0.908 11 C 0.540 3.460 12 O -0.570 6.570 13 N -0.519 5.519 14 N -0.524 5.524 15 C 0.727 3.273 16 O -0.600 6.600 17 N -0.739 5.739 18 C 0.098 3.902 19 C 0.453 3.547 20 F -0.185 7.185 21 F -0.170 7.170 22 F -0.181 7.181 23 C -0.058 4.058 24 C -0.102 4.102 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.126 4.126 28 C -0.149 4.149 29 H 0.271 0.729 30 H 0.431 0.569 31 H 0.442 0.558 32 H 0.407 0.593 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 0.614 8.215 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.149 1.149 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.012 3.988 10 H 0.110 0.890 11 C 0.328 3.672 12 O -0.447 6.447 13 N -0.272 5.272 14 N -0.277 5.277 15 C 0.426 3.574 16 O -0.477 6.477 17 N -0.399 5.399 18 C -0.027 4.027 19 C 0.398 3.602 20 F -0.166 7.166 21 F -0.152 7.152 22 F -0.163 7.163 23 C -0.059 4.059 24 C -0.120 4.120 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.167 4.167 29 H 0.080 0.920 30 H 0.275 0.725 31 H 0.288 0.712 32 H 0.244 0.756 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.974 -0.452 8.487 10.994 hybrid contribution -0.831 1.177 -0.274 1.467 sum 6.143 0.725 8.213 10.282 Atomic orbital electron populations 1.69982 1.07966 1.28537 1.49484 1.25643 0.95189 1.01970 0.93046 0.86233 0.80334 0.79571 0.80095 1.19489 1.21227 1.14877 1.20442 0.87522 0.93905 1.52680 0.93725 1.18430 0.96485 0.93686 0.90229 0.89050 1.21430 0.78016 0.88355 0.79369 1.90628 1.38275 1.45654 1.70171 1.45006 1.52130 1.18627 1.11389 1.44348 1.53336 1.21003 1.09057 1.15347 0.79283 0.82671 0.80081 1.91008 1.63614 1.32680 1.60354 1.44674 1.52612 1.27739 1.14866 1.22496 0.99943 0.96297 0.83971 1.20536 0.80177 0.84338 0.75114 1.93267 1.56233 1.96750 1.70389 1.93227 1.90260 1.95547 1.36147 1.93233 1.77972 1.49447 1.95638 1.19999 0.94503 0.94958 0.96445 1.20857 0.98891 0.97816 0.94427 1.21355 0.98037 1.00104 0.95784 1.21356 0.98363 0.94973 1.00662 1.21367 1.00386 0.99217 0.93426 1.21264 0.97753 0.99566 0.98100 0.91966 0.72510 0.71227 0.75558 0.85409 0.84741 0.88881 0.84947 0.83492 0.83513 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.08 13.96 21.45 0.30 -49.78 16 2 C 0.04 2.13 5.47 84.65 0.46 2.59 16 3 Si 0.91 36.85 27.23 68.60 1.87 38.71 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.23 -7.73 6.06 99.48 0.60 -7.12 16 7 C -0.51 -24.28 8.06 25.60 0.21 -24.08 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.03 1.40 1.90 -13.03 -0.02 1.38 16 10 H 0.09 3.41 4.87 -2.39 -0.01 3.40 16 11 C 0.54 20.85 7.15 87.66 0.63 21.48 16 12 O -0.57 -24.29 15.21 -3.03 -0.05 -24.34 16 13 N -0.52 -16.63 6.16 -173.53 -1.07 -17.69 16 14 N -0.52 -15.57 6.26 -184.75 -1.16 -16.73 16 15 C 0.73 20.24 8.68 179.06 1.55 21.79 16 16 O -0.60 -19.34 17.18 -3.97 -0.07 -19.41 16 17 N -0.74 -16.38 5.38 -478.53 -2.57 -18.95 16 18 C 0.10 1.65 5.64 86.38 0.49 2.14 16 19 C 0.45 8.25 3.11 71.98 0.22 8.47 16 20 F -0.18 -4.21 17.18 44.97 0.77 -3.44 16 21 F -0.17 -2.99 17.32 44.97 0.78 -2.21 16 22 F -0.18 -3.63 17.18 44.97 0.77 -2.85 16 23 C -0.06 -2.34 4.11 -19.87 -0.08 -2.42 16 24 C -0.10 -4.15 8.25 22.27 0.18 -3.97 16 25 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 26 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 27 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 28 C -0.15 -5.21 9.50 22.27 0.21 -5.00 16 29 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.43 12.50 6.59 -213.32 -1.41 11.09 16 31 H 0.44 13.52 8.10 -213.32 -1.73 11.79 16 32 H 0.41 8.84 6.28 -92.71 -0.58 8.25 16 33 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 4.12 7.93 -2.91 -0.02 4.10 16 36 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.13 3.88 7.95 -2.91 -0.02 3.86 16 Total: -1.00 -63.89 353.88 1.44 -62.46 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -2.66 Total: 43.50 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.52 Total: 10.74 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.50 Total: -103.15 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.11 Total: -43.75 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 2.32 Total: -8.51 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.87 Total: 38.71 kcal Total: -63.89 1.44 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618104462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.828 kcal (2) G-P(sol) polarization free energy of solvation -63.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds