Wall clock time and date at job start Wed Apr 1 2020 04:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36534 * 127.14665 * 2 1 4 4 S 1.76208 * 126.48323 * 0.03656 * 3 2 1 5 5 C 1.80999 * 100.00145 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47050 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46839 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46653 * 180.02562 * 7 6 5 9 9 H 1.07991 * 119.99989 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99718 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00030 * 180.02562 * 10 8 7 12 12 Si 1.86810 * 120.00014 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47145 * 89.99654 * 12 10 8 14 14 H 1.48495 * 109.46813 * 210.00109 * 12 10 8 15 15 H 1.48500 * 109.46738 * 329.99661 * 12 10 8 16 16 N 1.31287 * 107.03431 * 180.02562 * 3 2 1 17 17 N 1.28524 * 109.85335 * 359.97438 * 16 3 2 18 18 C 1.30299 * 110.08083 * 0.02562 * 17 16 3 19 19 C 1.50697 * 126.33720 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.63770 * 180.72143 * 19 18 17 21 21 C 1.53877 * 109.64535 * 60.29645 * 19 18 17 22 22 C 1.55050 * 106.62287 * 192.96186 * 21 19 18 23 23 S 1.83296 * 102.56365 * 42.43301 * 22 21 19 24 24 O 1.42102 * 109.35171 * 90.18774 * 23 22 21 25 25 O 1.42101 * 109.34967 * 223.25420 * 23 22 21 26 26 C 1.54161 * 109.64758 * 301.14948 * 19 18 17 27 27 H 1.09005 * 109.47118 * 269.97772 * 1 2 3 28 28 H 1.08997 * 109.46828 * 29.97824 * 1 2 3 29 29 H 1.08994 * 109.46911 * 149.97689 * 1 2 3 30 30 H 1.09002 * 109.46667 * 300.00106 * 5 4 3 31 31 H 1.09000 * 109.46986 * 60.00137 * 5 4 3 32 32 H 1.08991 * 109.47237 * 300.00022 * 6 5 4 33 33 H 1.09000 * 109.46995 * 60.00288 * 6 5 4 34 34 H 1.08991 * 109.47520 * 300.00211 * 7 6 5 35 35 H 1.09000 * 109.46796 * 60.00528 * 7 6 5 36 36 H 0.97001 * 119.99381 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.03087 * 312.25423 * 21 19 18 38 38 H 1.09000 * 110.03363 * 73.67464 * 21 19 18 39 39 H 1.09000 * 110.79036 * 160.70002 * 22 21 19 40 40 H 1.08999 * 110.79420 * 284.16862 * 22 21 19 41 41 H 1.08996 * 110.31661 * 266.66477 * 26 19 18 42 42 H 1.08994 * 110.31764 * 28.86572 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2895 1.0883 0.0000 4 16 1.7929 2.7790 0.0009 5 6 3.4145 3.5829 -0.0004 6 6 3.2307 5.1018 -0.0005 7 6 4.6015 5.7814 -0.0010 8 6 4.4204 7.2775 -0.0004 9 1 3.4270 7.7012 0.0006 10 6 5.5229 8.1054 -0.0012 11 7 5.3649 9.4110 -0.0002 12 14 7.2413 7.3725 -0.0037 13 1 7.6948 7.1790 -1.4044 14 1 8.1730 8.2931 0.6958 15 1 7.2216 6.0626 0.6956 16 7 3.5223 0.6369 -0.0006 17 7 3.5165 -0.6484 -0.0004 18 6 2.2907 -1.0902 -0.0002 19 6 1.8623 -2.5350 -0.0005 20 1 0.7740 -2.5944 -0.0132 21 6 2.4040 -3.2355 1.2580 22 6 2.2187 -4.7582 1.0325 23 16 2.7340 -4.9684 -0.7139 24 8 4.1281 -5.2393 -0.7641 25 8 1.8206 -5.8343 -1.3735 26 6 2.4347 -3.2451 -1.2434 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 3.9690 3.2837 0.8890 31 1 3.9674 3.2842 -0.8910 32 1 2.6763 5.4007 -0.8900 33 1 2.6776 5.4009 0.8899 34 1 5.1555 5.4825 0.8888 35 1 5.1549 5.4824 -0.8911 36 1 6.1407 9.9933 -0.0004 37 1 3.4609 -3.0034 1.3887 38 1 1.8402 -2.9167 2.1346 39 1 2.8656 -5.3295 1.6982 40 1 1.1754 -5.0449 1.1651 41 1 1.7120 -3.2218 -2.0589 42 1 3.3690 -2.7755 -1.5508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651708375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:37 Heat of formation + Delta-G solvation = -2.501475 kcal Electronic energy + Delta-G solvation = -24776.799724 eV Core-core repulsion = 21011.686583 eV Total energy + Delta-G solvation = -3765.113140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.23319 -37.65094 -37.45370 -36.48660 -35.38606 -34.68674 -32.15937 -31.65075 -29.89285 -28.15865 -28.04296 -26.16356 -23.60189 -23.35698 -22.62325 -20.71376 -20.26711 -19.37449 -18.08670 -17.52813 -17.23247 -16.79661 -16.63944 -16.33993 -16.14619 -15.34223 -14.88244 -14.85333 -14.71900 -14.48264 -13.94916 -13.92231 -13.62737 -13.04023 -12.94959 -12.86896 -12.63509 -12.62519 -12.50484 -12.30520 -12.21075 -11.92133 -11.87436 -11.45833 -11.35282 -10.97396 -10.95297 -10.91608 -10.60439 -10.43312 -10.13780 -9.97933 -9.82077 -9.71657 -9.26436 -8.57430 -7.76697 -6.08078 -4.07262 -0.53716 0.93608 1.24603 1.93098 2.09485 2.27688 2.47936 3.01433 3.30666 3.35101 3.38432 3.42487 3.55021 3.76834 3.90140 3.96748 4.11288 4.13870 4.24817 4.42891 4.55593 4.67051 4.85162 4.86540 4.93030 5.01691 5.17584 5.24694 5.25896 5.32184 5.35321 5.44706 5.62222 5.91266 6.26298 6.29065 6.38054 6.70493 7.17954 7.30738 7.72243 8.34935 8.47529 8.95479 9.53728 11.04960 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.001968 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.830203 B =14222.322779 C =15088.513610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.465 5.465 3 C 0.171 3.829 4 S -0.015 6.015 5 C -0.093 4.093 6 C -0.090 4.090 7 C -0.006 4.006 8 C -0.523 4.523 9 H 0.073 0.927 10 C 0.068 3.932 11 N -0.902 5.902 12 Si 0.879 3.121 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.264 1.264 16 N -0.287 5.287 17 N -0.272 5.272 18 C 0.173 3.827 19 C 0.015 3.985 20 H 0.108 0.892 21 C -0.113 4.113 22 C -0.586 4.586 23 S 2.395 3.605 24 O -0.926 6.926 25 O -0.936 6.936 26 C -0.593 4.593 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 -29.910 1.861 33.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.159 5.159 3 C -0.203 4.203 4 S 0.215 5.785 5 C -0.241 4.241 6 C -0.130 4.130 7 C -0.045 4.045 8 C -0.561 4.561 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.706 3.294 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.188 1.188 16 N -0.131 5.131 17 N -0.112 5.112 18 C -0.097 4.097 19 C -0.007 4.007 20 H 0.127 0.873 21 C -0.153 4.153 22 C -0.716 4.716 23 S 2.577 3.423 24 O -0.923 6.923 25 O -0.933 6.933 26 C -0.722 4.722 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.604 -30.062 1.349 33.024 hybrid contribution 0.366 0.009 0.356 0.511 sum -13.238 -30.052 1.705 32.883 Atomic orbital electron populations 1.22205 0.74957 1.05617 1.04665 1.46280 1.08690 1.04904 1.56018 1.27126 0.89942 0.96525 1.06752 1.85602 1.15414 0.85397 1.92067 1.23955 0.93001 1.00120 1.07064 1.21363 1.01501 0.87621 1.02470 1.19558 0.91607 0.96496 0.96865 1.21066 0.95019 0.88711 1.51319 0.90905 1.25016 0.99253 0.94713 0.94417 1.69910 1.30552 1.02739 1.50823 0.86790 0.84414 0.79552 0.78649 1.20204 1.21330 1.18835 1.74804 1.15589 1.02410 1.20337 1.73899 1.16850 1.03511 1.16915 1.24307 0.87361 0.90644 1.07395 1.19829 1.01580 0.86145 0.93162 0.87343 1.22285 1.05341 0.89805 0.97831 1.30646 1.12973 1.03826 1.24153 1.08964 0.75935 0.77930 0.79452 1.93661 1.29905 1.83130 1.85611 1.93630 1.65468 1.61747 1.72495 1.30724 1.12530 1.23000 1.05931 0.89415 0.88338 0.88819 0.88714 0.88752 0.91576 0.91545 0.96138 0.96580 0.92655 0.87770 0.87912 0.83749 0.84161 0.83818 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.79 59.85 0.65 0.97 16 2 N -0.47 -4.51 3.21 -120.90 -0.39 -4.89 16 3 C 0.17 2.27 8.07 -88.34 -0.71 1.56 16 4 S -0.01 -0.19 21.81 -107.50 -2.34 -2.54 16 5 C -0.09 -1.46 5.23 37.16 0.19 -1.27 16 6 C -0.09 -1.66 5.16 -26.73 -0.14 -1.80 16 7 C -0.01 -0.13 4.04 -27.88 -0.11 -0.24 16 8 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 9 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 10 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 11 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 12 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 16 N -0.29 -4.55 11.60 30.68 0.36 -4.20 16 17 N -0.27 -3.79 11.94 32.99 0.39 -3.39 16 18 C 0.17 1.70 6.51 -153.99 -1.00 0.70 16 19 C 0.01 0.07 2.98 -90.71 -0.27 -0.20 16 20 H 0.11 0.17 6.95 -51.93 -0.36 -0.19 16 21 C -0.11 -0.47 5.78 -25.19 -0.15 -0.61 16 22 C -0.59 -1.49 7.31 38.24 0.28 -1.22 16 23 S 2.40 13.71 6.10 -107.50 -0.66 13.06 16 24 O -0.93 -9.41 18.14 -57.73 -1.05 -10.45 16 25 O -0.94 -8.17 18.15 -57.73 -1.05 -9.22 16 26 C -0.59 -2.99 6.72 37.76 0.25 -2.74 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.47 7.86 -51.93 -0.41 0.06 16 29 H 0.09 0.17 7.22 -51.93 -0.38 -0.21 16 30 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 35 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 37 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.14 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.14 0.05 8.14 -51.93 -0.42 -0.38 16 41 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.15 1.03 7.71 -51.93 -0.40 0.63 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -39.50 373.02 -10.57 -50.07 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -6.12 Total: -6.35 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.44 Total: -17.90 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.14 Total: -39.21 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -2.10 Total: -19.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 13.52 SS G_CDS: -3.00 Total: 10.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.50 -10.57 -50.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651708375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.569 kcal (2) G-P(sol) polarization free energy of solvation -39.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds