Wall clock time and date at job start Wed Apr 1 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35946 * 116.99547 * 2 1 4 4 N 1.30341 * 121.64696 * 0.27181 * 3 2 1 5 5 S 1.69585 * 107.17642 * 180.22620 * 4 3 2 6 6 C 1.72023 * 95.78127 * 359.73074 * 5 4 3 7 7 C 1.35059 * 105.59993 * 359.97438 * 6 5 4 8 8 C 1.50707 * 122.63852 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46739 * 260.02553 * 8 7 6 10 10 C 1.46899 * 110.99701 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46751 * 65.00528 * 11 10 9 13 13 C 1.52997 * 109.47284 * 185.00225 * 11 10 9 14 14 N 1.46499 * 109.47481 * 305.00748 * 11 10 9 15 15 C 1.34777 * 120.00199 * 154.99940 * 14 11 10 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 11 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47522 * 119.99735 * 23 21 19 26 26 H 1.48500 * 109.47073 * 240.00101 * 23 21 19 27 27 H 1.08996 * 109.47525 * 59.99752 * 1 2 3 28 28 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47174 * 299.99865 * 1 2 3 30 30 H 1.07996 * 127.20097 * 180.02562 * 6 5 4 31 31 H 1.08993 * 109.47037 * 140.02498 * 8 7 6 32 32 H 1.08996 * 109.46838 * 20.02643 * 8 7 6 33 33 H 1.00902 * 111.00072 * 56.04474 * 9 8 7 34 34 H 1.09006 * 109.46656 * 60.00235 * 10 9 8 35 35 H 1.08994 * 109.47413 * 300.00323 * 10 9 8 36 36 H 1.09007 * 109.47320 * 300.00586 * 13 11 10 37 37 H 1.08993 * 109.47268 * 60.00476 * 13 11 10 38 38 H 1.09006 * 109.47495 * 180.02562 * 13 11 10 39 39 H 0.97000 * 119.99484 * 334.99037 * 14 11 10 40 40 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 41 41 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 42 42 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3244 0.0053 5 16 2.4908 3.5952 -0.0031 6 6 3.8881 2.5917 -0.0058 7 6 3.4243 1.3233 0.0005 8 6 4.3371 0.1241 0.0011 9 7 4.4374 -0.4156 -1.3615 10 6 5.3217 -1.5879 -1.3995 11 6 5.4005 -2.1211 -2.8315 12 1 5.8788 -1.3783 -3.4699 13 6 6.2197 -3.4132 -2.8503 14 7 4.0487 -2.3927 -3.3265 15 6 3.8006 -2.3784 -4.6512 16 8 4.6963 -2.1402 -5.4333 17 6 2.4086 -2.6517 -5.1600 18 16 2.3969 -2.5534 -6.9673 19 6 0.6992 -2.9046 -7.2818 20 1 0.0260 -3.0962 -6.4593 21 6 0.2266 -2.9339 -8.5865 22 7 1.0467 -2.6988 -9.5889 23 14 -1.5735 -3.3055 -8.9199 24 1 -2.2789 -3.5313 -7.6328 25 1 -2.1928 -2.1575 -9.6296 26 1 -1.6796 -4.5238 -9.7623 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.9202 2.9096 -0.0106 31 1 3.9331 -0.6396 0.6656 32 1 5.3268 0.4211 0.3481 33 1 4.7486 0.2929 -2.0090 34 1 4.9249 -2.3637 -0.7446 35 1 6.3182 -1.3026 -1.0624 36 1 7.2255 -3.2111 -2.4819 37 1 5.7414 -4.1559 -2.2119 38 1 6.2762 -3.7928 -3.8705 39 1 3.3322 -2.5830 -2.7009 40 1 2.0970 -3.6486 -4.8483 41 1 1.7206 -1.9116 -4.7514 42 1 0.7166 -2.7196 -10.5008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754218630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:52 Heat of formation + Delta-G solvation = -30.169511 kcal Electronic energy + Delta-G solvation = -25051.164286 eV Core-core repulsion = 21284.851370 eV Total energy + Delta-G solvation = -3766.312916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53750 -39.28956 -37.53966 -36.54055 -34.40812 -32.38103 -31.92424 -30.91596 -28.42346 -28.19630 -27.02356 -25.43389 -24.40424 -23.09549 -21.53325 -20.38886 -20.12546 -18.50932 -17.79347 -17.47448 -16.46491 -16.43635 -16.17145 -15.36210 -15.24880 -14.91672 -14.77368 -14.75592 -14.57405 -14.06375 -13.73331 -13.60367 -13.15131 -13.06502 -12.69503 -12.66938 -12.45875 -12.27520 -12.03161 -11.91623 -11.62092 -11.37499 -11.34441 -11.04143 -10.99973 -10.96311 -10.85902 -10.70675 -9.96285 -9.74679 -9.25414 -9.03003 -8.71358 -8.70636 -8.51142 -8.15929 -6.43204 -6.17163 -3.86452 0.37154 1.10945 1.43859 2.13169 2.97204 3.13550 3.24024 3.25739 3.31838 3.38136 3.80911 4.00233 4.25353 4.28024 4.57747 4.69710 4.84526 4.97706 5.01011 5.07971 5.09952 5.17996 5.26129 5.26405 5.32988 5.37121 5.42556 5.50105 5.52734 5.62527 5.77429 5.96687 6.00607 6.06164 6.19300 6.26083 6.64363 6.84790 6.89659 7.08228 7.64710 7.93923 8.40392 8.79189 9.28406 10.90344 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.002780 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.106840 B =10070.282096 C =11950.654548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.280 6.280 3 C 0.331 3.669 4 N -0.533 5.533 5 S 0.285 5.715 6 C -0.187 4.187 7 C -0.165 4.165 8 C 0.135 3.865 9 N -0.678 5.678 10 C 0.053 3.947 11 C 0.147 3.853 12 H 0.084 0.916 13 C -0.162 4.162 14 N -0.719 5.719 15 C 0.534 3.466 16 O -0.525 6.525 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.345 0.655 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 7.946 26.309 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.185 6.185 3 C 0.117 3.883 4 N -0.373 5.373 5 S 0.435 5.565 6 C -0.335 4.335 7 C -0.184 4.184 8 C 0.003 3.997 9 N -0.310 5.310 10 C -0.076 4.076 11 C 0.041 3.959 12 H 0.102 0.898 13 C -0.221 4.221 14 N -0.372 5.372 15 C 0.320 3.680 16 O -0.401 6.401 17 C -0.302 4.302 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.206 0.794 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.236 0.764 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.846 9.329 24.880 27.439 hybrid contribution -0.869 -1.536 1.035 2.046 sum 5.977 7.793 25.915 27.714 Atomic orbital electron populations 1.23000 0.76862 1.03775 1.02360 1.86353 1.22630 1.22006 1.87529 1.19973 0.89685 0.85258 0.93388 1.76602 1.26111 1.01247 1.33315 1.83989 0.90111 1.13106 1.69313 1.26394 1.06634 0.96948 1.03529 1.19093 0.91817 0.96236 1.11280 1.20342 0.95276 0.92568 0.91494 1.60365 1.54175 1.09942 1.06482 1.22291 0.94937 0.93516 0.96897 1.20819 0.84294 0.97211 0.93620 0.89813 1.22154 0.99331 0.97435 1.03226 1.45843 1.10752 1.73558 1.07076 1.20238 0.90301 0.75755 0.81729 1.90681 1.46603 1.47335 1.55434 1.23506 0.95856 1.04414 1.06404 1.85349 1.13467 1.92637 0.92116 1.22919 0.94672 1.55344 0.95180 0.90954 1.24986 0.98744 0.94802 0.95095 1.70034 1.34906 1.46265 0.99173 0.86133 0.82999 0.78078 0.78388 1.19631 1.20601 1.20604 0.91963 0.87909 0.92512 0.79423 0.89488 0.94048 0.83675 0.90251 0.93878 0.92087 0.92469 0.91388 0.76443 0.89496 0.89352 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.47 101.05 1.06 1.38 16 2 O -0.28 -3.17 10.13 -19.57 -0.20 -3.37 16 3 C 0.33 3.74 7.40 -18.17 -0.13 3.61 16 4 N -0.53 -6.28 11.14 28.92 0.32 -5.96 16 5 S 0.28 2.46 23.71 -107.50 -2.55 -0.09 16 6 C -0.19 -1.33 11.15 29.60 0.33 -1.00 16 7 C -0.17 -1.49 5.35 -105.74 -0.57 -2.06 16 8 C 0.13 1.02 5.70 -4.97 -0.03 0.99 16 9 N -0.68 -6.07 6.21 -115.06 -0.72 -6.79 16 10 C 0.05 0.43 5.24 -3.83 -0.02 0.41 16 11 C 0.15 1.64 2.81 -67.93 -0.19 1.45 16 12 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 13 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 14 N -0.72 -9.82 4.80 -53.81 -0.26 -10.08 16 15 C 0.53 10.15 7.81 -10.98 -0.09 10.06 16 16 O -0.53 -11.98 15.52 5.55 0.09 -11.89 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 23 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.19 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.34 3.29 8.72 -39.29 -0.34 2.95 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 4.81 8.60 -40.82 -0.35 4.45 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -35.87 389.40 -8.93 -44.81 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.12 Total: 3.14 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 1.13 Total: -2.62 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.08 Total: -48.64 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -4.76 Total: -4.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.87 -8.93 -44.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754218630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.636 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds