Wall clock time and date at job start Wed Apr 1 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35946 * 116.99547 * 2 1 4 4 N 1.30341 * 121.64696 * 0.27181 * 3 2 1 5 5 S 1.69585 * 107.17642 * 180.22620 * 4 3 2 6 6 C 1.72023 * 95.78127 * 359.73074 * 5 4 3 7 7 C 1.35059 * 105.59993 * 359.97438 * 6 5 4 8 8 C 1.50707 * 122.63852 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46739 * 260.02553 * 8 7 6 10 10 C 1.46899 * 110.99701 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46751 * 65.00528 * 11 10 9 13 13 C 1.52997 * 109.47284 * 185.00225 * 11 10 9 14 14 N 1.46499 * 109.47481 * 305.00748 * 11 10 9 15 15 C 1.34777 * 120.00199 * 154.99940 * 14 11 10 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 11 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 11 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47522 * 119.99735 * 23 21 19 26 26 H 1.48500 * 109.47073 * 240.00101 * 23 21 19 27 27 H 1.08996 * 109.47525 * 59.99752 * 1 2 3 28 28 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47174 * 299.99865 * 1 2 3 30 30 H 1.07996 * 127.20097 * 180.02562 * 6 5 4 31 31 H 1.08993 * 109.47037 * 140.02498 * 8 7 6 32 32 H 1.08996 * 109.46838 * 20.02643 * 8 7 6 33 33 H 1.00902 * 111.00072 * 56.04474 * 9 8 7 34 34 H 1.09006 * 109.46656 * 60.00235 * 10 9 8 35 35 H 1.08994 * 109.47413 * 300.00323 * 10 9 8 36 36 H 1.09007 * 109.47320 * 300.00586 * 13 11 10 37 37 H 1.08993 * 109.47268 * 60.00476 * 13 11 10 38 38 H 1.09006 * 109.47495 * 180.02562 * 13 11 10 39 39 H 0.97000 * 119.99484 * 334.99037 * 14 11 10 40 40 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 41 41 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 42 42 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 7 1.3679 2.3244 0.0053 5 16 2.4908 3.5952 -0.0031 6 6 3.8881 2.5917 -0.0058 7 6 3.4243 1.3233 0.0005 8 6 4.3371 0.1241 0.0011 9 7 4.4374 -0.4156 -1.3615 10 6 5.3217 -1.5879 -1.3995 11 6 5.4005 -2.1211 -2.8315 12 1 5.8788 -1.3783 -3.4699 13 6 6.2197 -3.4132 -2.8503 14 7 4.0487 -2.3927 -3.3265 15 6 3.8006 -2.3784 -4.6512 16 8 4.6963 -2.1402 -5.4333 17 6 2.4086 -2.6517 -5.1600 18 16 2.3969 -2.5534 -6.9673 19 6 0.6992 -2.9046 -7.2818 20 1 0.0260 -3.0962 -6.4593 21 6 0.2266 -2.9339 -8.5865 22 7 1.0467 -2.6988 -9.5889 23 14 -1.5735 -3.3055 -8.9199 24 1 -2.2789 -3.5313 -7.6328 25 1 -2.1928 -2.1575 -9.6296 26 1 -1.6796 -4.5238 -9.7623 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.9202 2.9096 -0.0106 31 1 3.9331 -0.6396 0.6656 32 1 5.3268 0.4211 0.3481 33 1 4.7486 0.2929 -2.0090 34 1 4.9249 -2.3637 -0.7446 35 1 6.3182 -1.3026 -1.0624 36 1 7.2255 -3.2111 -2.4819 37 1 5.7414 -4.1559 -2.2119 38 1 6.2762 -3.7928 -3.8705 39 1 3.3322 -2.5830 -2.7009 40 1 2.0970 -3.6486 -4.8483 41 1 1.7206 -1.9116 -4.7514 42 1 0.7166 -2.7196 -10.5008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754218630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:51 Heat of formation + Delta-G solvation = -59.482014 kcal Electronic energy + Delta-G solvation = -25052.435372 eV Core-core repulsion = 21284.851370 eV Total energy + Delta-G solvation = -3767.584002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25407 -40.65223 -38.32542 -37.44955 -35.37123 -34.58248 -32.94375 -31.90580 -29.89805 -28.90854 -27.70219 -27.64551 -25.11897 -23.77856 -22.56135 -21.46305 -21.05894 -19.82491 -19.18171 -18.25701 -17.84238 -17.32883 -17.18563 -16.88177 -16.37301 -16.16999 -15.93942 -15.79794 -15.52623 -15.35109 -14.70868 -14.62150 -14.40365 -14.31249 -13.86504 -13.76821 -13.27747 -13.20029 -13.15413 -12.94316 -12.91258 -12.77343 -12.66553 -12.55516 -12.08227 -12.03790 -11.82176 -11.69827 -11.59721 -11.15676 -10.83372 -10.65338 -10.26140 -9.96027 -9.32688 -9.19271 -8.65004 -8.34627 -6.11921 -0.26703 0.46079 0.75688 1.28430 1.40586 1.41052 1.47813 1.59466 1.72931 2.26993 2.28814 2.41844 2.99243 3.28031 3.36552 3.65185 3.89469 4.03956 4.12013 4.22861 4.28237 4.30294 4.34086 4.35000 4.47310 4.53454 4.54534 4.67938 4.70129 4.76479 4.82815 4.82980 4.95128 5.12711 5.26266 5.32731 5.41938 5.65957 6.04913 6.16489 6.20159 6.40237 6.66308 7.06694 7.38458 8.74888 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.002780 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.106840 B =10070.282096 C =11950.654548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.293 6.293 3 C 0.316 3.684 4 N -0.574 5.574 5 S 0.289 5.711 6 C -0.163 4.163 7 C -0.184 4.184 8 C 0.142 3.858 9 N -0.695 5.695 10 C 0.066 3.934 11 C 0.144 3.856 12 H 0.062 0.938 13 C -0.157 4.157 14 N -0.693 5.693 15 C 0.535 3.465 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.080 0.920 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.272 1.272 27 H 0.045 0.955 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.225 0.775 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.413 0.587 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 7.710 28.821 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.198 6.198 3 C 0.102 3.898 4 N -0.414 5.414 5 S 0.439 5.561 6 C -0.311 4.311 7 C -0.203 4.203 8 C 0.011 3.989 9 N -0.327 5.327 10 C -0.063 4.063 11 C 0.039 3.961 12 H 0.081 0.919 13 C -0.216 4.216 14 N -0.345 5.345 15 C 0.320 3.680 16 O -0.449 6.449 17 C -0.279 4.279 18 S 0.079 5.921 19 C -0.694 4.694 20 H 0.098 0.902 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.197 1.197 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.077 0.923 30 H 0.242 0.758 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.250 0.750 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.957 9.085 27.463 29.751 hybrid contribution -0.821 -1.396 0.375 1.662 sum 6.137 7.689 27.837 29.524 Atomic orbital electron populations 1.23073 0.76318 1.04899 1.01670 1.86316 1.23312 1.22494 1.87666 1.20409 0.90710 0.85100 0.93608 1.76473 1.28159 1.02282 1.34531 1.83916 0.90560 1.12360 1.69225 1.26830 1.07642 0.95710 1.00921 1.19296 0.91112 0.97523 1.12333 1.20324 0.96125 0.91909 0.90531 1.60345 1.54733 1.10219 1.07355 1.22197 0.96418 0.93487 0.94227 1.21049 0.82374 0.97371 0.95342 0.91949 1.22098 1.00940 0.97098 1.01460 1.45657 1.12504 1.71244 1.05133 1.19922 0.88906 0.75889 0.83239 1.90669 1.47424 1.49842 1.56951 1.23349 0.97875 1.05825 1.00866 1.85492 1.14434 1.93027 0.99186 1.23235 0.94731 1.55540 0.95904 0.90218 1.26117 1.04133 0.94189 0.94675 1.70190 1.37487 1.47288 0.99775 0.84918 0.76276 0.78089 0.78745 1.18161 1.19893 1.19747 0.93584 0.85836 0.92281 0.75824 0.89679 0.91411 0.84210 0.88885 0.91289 0.89464 0.90872 0.94968 0.75032 0.87740 0.88191 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.47 113.37 1.19 1.83 16 2 O -0.29 -6.43 10.13 -92.95 -0.94 -7.38 16 3 C 0.32 6.90 7.40 84.92 0.63 7.53 16 4 N -0.57 -13.48 11.14 -176.08 -1.96 -15.44 16 5 S 0.29 4.69 23.71 -56.49 -1.34 3.35 16 6 C -0.16 -1.89 11.15 67.09 0.75 -1.15 16 7 C -0.18 -2.95 5.35 -20.59 -0.11 -3.06 16 8 C 0.14 1.72 5.70 85.56 0.49 2.21 16 9 N -0.70 -10.60 6.21 -517.93 -3.22 -13.82 16 10 C 0.07 0.83 5.24 86.30 0.45 1.28 16 11 C 0.14 2.96 2.81 44.99 0.13 3.09 16 12 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 13 C -0.16 -2.99 9.48 71.98 0.68 -2.31 16 14 N -0.69 -18.01 4.80 -442.54 -2.12 -20.14 16 15 C 0.53 20.38 7.81 87.66 0.68 21.06 16 16 O -0.57 -26.74 15.52 -3.04 -0.05 -26.79 16 17 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 18 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 19 C -0.55 -32.07 9.50 67.95 0.65 -31.42 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 23 Si 1.00 44.55 29.55 68.60 2.03 46.57 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.23 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.34 5.76 8.72 -89.69 -0.78 4.98 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.41 8.97 8.60 -92.71 -0.80 8.17 16 40 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 41 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -81.74 389.40 -2.57 -84.31 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.53 Total: 20.14 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.44 Total: -4.60 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -7.02 Total: -105.96 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.99 Total: -34.17 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.50 Total: -6.30 kcal Total: -81.74 -2.57 -84.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754218630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.829 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds