Wall clock time and date at job start Wed Apr 1 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49327 * 2 1 4 4 C 1.53199 * 109.49608 * 239.94459 * 2 1 3 5 5 N 1.46921 * 108.77168 * 185.37607 * 4 2 1 6 6 S 1.65599 * 120.63159 * 233.58126 * 5 4 2 7 7 O 1.42111 * 106.40123 * 336.46486 * 6 5 4 8 8 O 1.42102 * 106.40519 * 203.54397 * 6 5 4 9 9 C 1.76202 * 107.21764 * 90.00271 * 6 5 4 10 10 C 1.38636 * 119.74852 * 90.00399 * 9 6 5 11 11 C 1.37614 * 120.24430 * 180.02562 * 10 9 6 12 12 C 1.40714 * 119.75056 * 359.97438 * 11 10 9 13 13 C 1.41395 * 120.24638 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00003 * 336.00346 * 13 12 11 15 15 C 1.39939 * 119.99906 * 155.72864 * 13 12 11 16 16 N 1.30824 * 120.00340 * 342.29074 * 15 13 12 17 17 Si 1.86803 * 119.99818 * 162.28754 * 15 13 12 18 18 H 1.48500 * 109.47302 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47120 * 119.99909 * 17 15 13 20 20 H 1.48500 * 109.47319 * 240.00024 * 17 15 13 21 21 C 1.40718 * 119.50687 * 0.27453 * 12 11 10 22 22 C 1.37615 * 119.74631 * 359.47165 * 21 12 11 23 23 C 1.46930 * 118.74105 * 53.86076 * 5 4 2 24 24 C 1.53625 * 108.54040 * 306.09185 * 23 5 4 25 25 C 1.53032 * 109.52730 * 120.08451 * 2 1 3 26 26 F 1.39893 * 109.46227 * 301.35619 * 25 2 1 27 27 F 1.39903 * 109.46042 * 61.31565 * 25 2 1 28 28 H 1.09011 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47262 * 300.05594 * 1 2 3 30 30 H 1.08997 * 109.47747 * 60.05995 * 1 2 3 31 31 H 1.08997 * 109.58561 * 65.59004 * 4 2 1 32 32 H 1.09000 * 109.70061 * 305.23426 * 4 2 1 33 33 H 1.08003 * 119.87329 * 359.97438 * 10 9 6 34 34 H 1.08011 * 120.12170 * 179.97438 * 11 10 9 35 35 H 0.96996 * 119.99949 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.12519 * 179.69919 * 21 12 11 37 37 H 1.08001 * 119.87348 * 180.27327 * 22 21 12 38 38 H 1.09000 * 109.58453 * 65.92219 * 23 5 4 39 39 H 1.09002 * 109.58811 * 186.34804 * 23 5 4 40 40 H 1.08996 * 109.63246 * 294.86317 * 24 23 5 41 41 H 1.08999 * 109.45775 * 174.74027 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2500 5 7 3.5046 -0.8278 -1.1704 6 16 4.4581 -0.2832 -2.4100 7 8 3.6461 -0.2958 -3.5762 8 8 5.6872 -0.9894 -2.3110 9 6 4.8278 1.4076 -2.0795 10 6 5.9550 1.7338 -1.3413 11 6 6.2532 3.0509 -1.0767 12 6 5.4092 4.0684 -1.5590 13 6 5.7059 5.4252 -1.2938 14 1 6.3124 5.6884 -0.4398 15 6 5.2184 6.4265 -2.1411 16 7 4.7965 6.1201 -3.3409 17 14 5.1698 8.2008 -1.5588 18 1 5.6997 8.2820 -0.1739 19 1 6.0033 9.0396 -2.4571 20 1 3.7684 8.6915 -1.5826 21 6 4.2650 3.7252 -2.3027 22 6 3.9892 2.4017 -2.5597 23 6 4.1058 -1.4304 0.0272 24 6 3.5716 -0.6942 1.2652 25 6 2.0415 -0.7230 1.2480 26 9 1.5504 -0.0836 2.3912 27 9 1.6006 -2.0506 1.2311 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5147 0.8895 30 1 -0.3634 0.5129 -0.8905 31 1 1.7632 -0.1573 -2.1390 32 1 1.6058 -1.7212 -1.3010 33 1 6.6011 0.9511 -0.9718 34 1 7.1317 3.3027 -0.5010 35 1 4.4583 6.8142 -3.9280 36 1 3.6077 4.4979 -2.6735 37 1 3.1139 2.1363 -3.1340 38 1 3.8351 -2.4849 0.0807 39 1 5.1903 -1.3313 -0.0190 40 1 3.9161 0.3399 1.2533 41 1 3.9347 -1.1883 2.1663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771707892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:38 Heat of formation + Delta-G solvation = -186.220316 kcal Electronic energy + Delta-G solvation = -29332.702982 eV Core-core repulsion = 24973.490057 eV Total energy + Delta-G solvation = -4359.212925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.98016 -47.93964 -39.38163 -39.11219 -38.24931 -36.81493 -35.80470 -34.34969 -32.51397 -32.06299 -31.28267 -27.85529 -27.62012 -25.38471 -23.71187 -23.24326 -22.94747 -21.42928 -19.97511 -19.43116 -18.92578 -18.35625 -18.17953 -17.63260 -17.27848 -17.11445 -16.91475 -15.97276 -15.81704 -15.32000 -15.19002 -14.93065 -14.82482 -14.48411 -14.25869 -14.18498 -14.06631 -13.98597 -13.85847 -13.54866 -13.51846 -13.34048 -13.13466 -13.01674 -12.97678 -12.94165 -12.87665 -12.66230 -12.57912 -12.13785 -12.03613 -11.89912 -11.54178 -11.34932 -11.30523 -11.21236 -10.13460 -9.76216 -9.53896 -8.87570 -6.64765 -0.41353 0.48966 1.06858 1.35700 1.41006 1.52588 2.06865 2.11909 2.51434 2.76073 2.90202 3.07306 3.29024 3.38412 3.43045 3.52943 3.78403 3.88354 4.13217 4.28415 4.30730 4.33684 4.46065 4.48481 4.49395 4.66851 4.72021 4.86244 4.87893 4.94193 4.94916 4.99350 5.09756 5.11135 5.24428 5.25665 5.50002 5.55832 5.61093 5.78673 5.94456 6.16376 6.50000 6.68996 6.81759 8.07536 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.003872 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.311939 B = 7229.476821 C = 8164.652229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 H 0.099 0.901 4 C 0.125 3.875 5 N -1.000 6.000 6 S 2.719 3.281 7 O -0.997 6.997 8 O -0.993 6.993 9 C -0.795 4.795 10 C 0.000 4.000 11 C -0.255 4.255 12 C 0.112 3.888 13 C -0.466 4.466 14 H 0.091 0.909 15 C 0.035 3.965 16 N -0.799 5.799 17 Si 0.990 3.010 18 H -0.253 1.253 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.206 4.206 22 C -0.018 4.018 23 C 0.120 3.880 24 C -0.173 4.173 25 C 0.295 3.705 26 F -0.209 7.209 27 F -0.200 7.200 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.298 0.702 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 -8.719 7.917 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 H 0.118 0.882 4 C 0.000 4.000 5 N -0.837 5.837 6 S 2.817 3.183 7 O -0.988 6.988 8 O -0.984 6.984 9 C -0.888 4.888 10 C -0.020 4.020 11 C -0.276 4.276 12 C 0.108 3.892 13 C -0.493 4.493 14 H 0.109 0.891 15 C -0.184 4.184 16 N -0.422 5.422 17 Si 0.809 3.191 18 H -0.176 1.176 19 H -0.188 1.188 20 H -0.185 1.185 21 C -0.227 4.227 22 C -0.038 4.038 23 C -0.005 4.005 24 C -0.213 4.213 25 C 0.259 3.741 26 F -0.190 7.190 27 F -0.181 7.181 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.526 -9.203 6.977 13.265 hybrid contribution -0.008 1.611 0.423 1.666 sum -6.534 -7.592 7.400 12.453 Atomic orbital electron populations 1.21789 0.91346 1.03702 1.03849 1.22522 0.99428 1.01431 0.93265 0.88249 1.21596 0.78074 1.02571 0.97727 1.57796 1.16044 1.75175 1.34709 1.00593 0.71931 0.73415 0.72409 1.93459 1.70141 1.88142 1.47066 1.93456 1.45005 1.73126 1.86806 1.29672 1.11079 1.21559 1.26488 1.20437 0.93028 0.96342 0.92172 1.21246 1.02039 0.93095 1.11194 1.18202 0.89542 0.93773 0.87677 1.20253 1.27569 0.91352 1.10088 0.89071 1.26995 0.91255 1.06747 0.93408 1.69862 1.27281 1.38632 1.06393 0.85032 0.79484 0.74615 0.79967 1.17602 1.18844 1.18543 1.21343 0.99467 0.95083 1.06763 1.20418 0.96407 0.92836 0.94163 1.21655 0.99360 0.98003 0.81454 1.23027 0.91296 1.05295 1.01653 1.21059 0.93914 0.75470 0.83654 1.92979 1.89875 1.82117 1.53988 1.92964 1.91313 1.37011 1.96795 0.90913 0.91596 0.89998 0.88140 0.88390 0.85501 0.87173 0.89086 0.87300 0.86759 0.88268 0.87499 0.88392 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.95 71.98 0.64 -2.10 16 2 C -0.15 -3.22 2.53 -10.72 -0.03 -3.25 16 3 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.13 2.92 5.45 86.37 0.47 3.39 16 5 N -1.00 -26.71 3.28 -512.27 -1.68 -28.39 16 6 S 2.72 96.53 5.69 -56.49 -0.32 96.21 16 7 O -1.00 -39.77 15.97 -128.00 -2.04 -41.81 16 8 O -0.99 -38.24 15.97 -128.00 -2.04 -40.28 16 9 C -0.79 -32.83 6.00 22.46 0.13 -32.69 16 10 C 0.00 0.00 9.49 22.22 0.21 0.21 16 11 C -0.26 -11.71 9.80 22.73 0.22 -11.49 16 12 C 0.11 5.61 5.57 -21.29 -0.12 5.49 16 13 C -0.47 -22.78 9.05 23.46 0.21 -22.57 16 14 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 15 C 0.04 1.61 5.14 85.26 0.44 2.05 16 16 N -0.80 -38.38 10.95 21.82 0.24 -38.14 16 17 Si 0.99 34.04 29.60 68.60 2.03 36.07 16 18 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 19 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 20 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 21 C -0.21 -10.23 8.70 22.73 0.20 -10.03 16 22 C -0.02 -0.81 9.49 22.22 0.21 -0.60 16 23 C 0.12 2.60 6.20 86.51 0.54 3.14 16 24 C -0.17 -3.51 5.64 30.82 0.17 -3.33 16 25 C 0.30 6.55 1.63 30.62 0.05 6.60 16 26 F -0.21 -5.18 16.50 44.97 0.74 -4.43 16 27 F -0.20 -4.44 15.64 44.97 0.70 -3.74 16 28 H 0.07 1.22 7.84 -2.38 -0.02 1.20 16 29 H 0.06 1.23 7.78 -2.39 -0.02 1.21 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 2.43 7.13 -2.39 -0.02 2.41 16 32 H 0.10 1.92 7.93 -2.39 -0.02 1.90 16 33 H 0.13 4.59 7.60 -2.91 -0.02 4.57 16 34 H 0.11 4.65 8.06 -2.90 -0.02 4.63 16 35 H 0.30 12.71 8.30 -92.71 -0.77 11.95 16 36 H 0.11 5.57 6.16 -2.91 -0.02 5.55 16 37 H 0.11 4.68 7.60 -2.91 -0.02 4.66 16 38 H 0.10 1.78 7.92 -2.39 -0.02 1.77 16 39 H 0.11 2.30 7.12 -2.39 -0.02 2.28 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -61.41 352.44 2.04 -59.37 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.06 Total: 30.33 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 3.36 Total: -65.19 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.44 Total: -66.53 kcal Atomic # 8 Polarization: -78.00 SS G_CDS: -4.09 Total: -82.09 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.45 Total: -8.17 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Atomic # 16 Polarization: 96.53 SS G_CDS: -0.32 Total: 96.21 kcal Total: -61.41 2.04 -59.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771707892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.845 kcal (2) G-P(sol) polarization free energy of solvation -61.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds