Wall clock time and date at job start Wed Apr 1 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00351 * 2 1 4 4 H 1.48494 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47061 * 300.00271 * 3 2 1 6 6 H 1.48507 * 109.47118 * 60.00070 * 3 2 1 7 7 C 1.38817 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99435 * 0.02562 * 7 2 1 10 10 C 1.50244 * 130.84275 * 0.02562 * 9 7 2 11 11 H 1.09000 * 115.85747 * 0.34269 * 10 9 7 12 12 C 1.55841 * 101.05052 * 233.95163 * 10 9 7 13 13 C 1.54857 * 103.44790 * 327.06179 * 12 10 9 14 14 C 1.50247 * 130.83651 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.85603 * 359.66118 * 14 9 7 16 16 C 1.55841 * 101.04904 * 233.98686 * 14 9 7 17 17 H 1.09004 * 110.62681 * 208.57617 * 16 14 9 18 18 N 1.46499 * 110.63177 * 85.54954 * 16 14 9 19 19 C 1.34770 * 120.00164 * 159.51692 * 18 16 14 20 20 O 1.21583 * 120.00188 * 0.02562 * 19 18 16 21 21 C 1.47521 * 119.99796 * 180.02562 * 19 18 16 22 22 C 1.36824 * 126.94175 * 180.02562 * 21 19 18 23 23 C 1.41261 * 103.84282 * 180.02562 * 22 21 19 24 24 C 1.50703 * 126.70113 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.47190 * 89.99982 * 24 23 22 26 26 F 1.39894 * 109.46836 * 209.99597 * 24 23 22 27 27 F 1.39897 * 109.47461 * 330.00114 * 24 23 22 28 28 N 1.30121 * 106.59440 * 359.97438 * 23 22 21 29 29 O 1.20894 * 111.97981 * 359.70558 * 28 23 22 30 30 C 1.54857 * 103.44584 * 327.06069 * 16 14 9 31 31 H 0.96999 * 120.00047 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.62715 * 85.55537 * 12 10 9 33 33 H 1.09003 * 110.62675 * 208.41285 * 12 10 9 34 34 H 1.09001 * 110.62573 * 241.51582 * 13 12 10 35 35 H 1.08993 * 110.62829 * 118.49359 * 13 12 10 36 36 H 0.97007 * 119.99633 * 339.52363 * 18 16 14 37 37 H 1.07998 * 128.07447 * 0.02562 * 22 21 19 38 38 H 1.08997 * 110.62590 * 118.49204 * 30 16 14 39 39 H 1.09004 * 110.62522 * 241.51235 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1502 -2.6706 -0.0029 11 1 -0.8015 -1.7966 -0.0088 12 6 -0.2752 -3.6113 1.2333 13 6 1.0658 -4.3856 1.2337 14 6 1.8186 -3.8073 -0.0029 15 1 2.9011 -3.9344 -0.0088 16 6 1.0671 -4.3834 -1.2406 17 1 0.8930 -5.4528 -1.1206 18 7 1.8170 -4.1160 -2.4703 19 6 1.5866 -4.8541 -3.5742 20 8 0.7561 -5.7417 -3.5495 21 6 2.3422 -4.5851 -4.8123 22 6 2.2238 -5.2415 -6.0069 23 6 3.1632 -4.5963 -6.8416 24 6 3.4561 -4.9176 -8.2846 25 9 2.6200 -4.1584 -9.1104 26 9 4.7919 -4.6139 -8.5680 27 9 3.2281 -6.2785 -8.5150 28 7 3.7254 -3.6697 -6.1216 29 8 3.2833 -3.6401 -4.9968 30 6 -0.2740 -3.6091 -1.2402 31 1 -0.4850 0.8400 0.0004 32 1 -0.3833 -3.0299 2.1488 33 1 -1.1159 -4.2946 1.1123 34 1 0.8920 -5.4547 1.1116 35 1 1.6229 -4.1883 2.1495 36 1 2.4795 -3.4076 -2.4901 37 1 1.5658 -6.0615 -6.2540 38 1 -0.3810 -3.0261 -2.1549 39 1 -1.1130 -4.2945 -1.1200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097271788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:45 Heat of formation + Delta-G solvation = -69.350081 kcal Electronic energy + Delta-G solvation = -30393.953602 eV Core-core repulsion = 25505.888126 eV Total energy + Delta-G solvation = -4888.065476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.62579 -48.15466 -48.11040 -45.67384 -40.03943 -38.58465 -35.15149 -34.09484 -32.73769 -32.40435 -29.20975 -29.01218 -27.99235 -27.65043 -24.68158 -24.13674 -23.45752 -21.67499 -20.64927 -20.01780 -19.24751 -19.13349 -18.86066 -18.50196 -18.15249 -17.45920 -17.10402 -16.24548 -16.15811 -14.99492 -14.96665 -14.91359 -14.76277 -14.54049 -14.51867 -14.27130 -14.24562 -14.11297 -13.95147 -13.69620 -13.07602 -12.90898 -12.35707 -12.15879 -11.96524 -11.44722 -11.35489 -11.21575 -11.00404 -10.96541 -10.67945 -10.52381 -10.37227 -10.23358 -10.13586 -10.00118 -9.41778 -9.28771 -9.06597 -8.78028 -7.04501 -5.82216 -3.21941 0.38061 1.12278 1.79567 2.24001 2.88415 2.93965 3.01135 3.32835 3.38659 3.41103 3.45350 3.83940 4.14530 4.25260 4.34338 4.60221 4.75997 4.99555 5.23461 5.25991 5.51455 5.54704 5.77293 5.91732 5.93168 6.02931 6.12053 6.28773 6.35929 6.46442 6.59004 6.71502 6.80794 6.90461 7.17657 7.26486 7.40049 7.59879 7.70939 8.05052 8.09225 8.99440 9.63063 10.41806 11.26801 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003007 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.115326 B = 9310.600480 C =10718.279702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.080 0.920 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.139 4.139 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.091 0.909 16 C 0.125 3.875 17 H 0.085 0.915 18 N -0.681 5.681 19 C 0.597 3.403 20 O -0.515 6.515 21 C -0.055 4.055 22 C -0.121 4.121 23 C -0.091 4.091 24 C 0.562 3.438 25 F -0.163 7.163 26 F -0.163 7.163 27 F -0.160 7.160 28 N -0.291 5.291 29 O 0.159 5.841 30 C -0.144 4.144 31 H 0.254 0.746 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.411 0.589 37 H 0.197 0.803 38 H 0.061 0.939 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -11.523 -10.384 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.178 4.178 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.109 0.891 16 C 0.019 3.981 17 H 0.103 0.897 18 N -0.330 5.330 19 C 0.378 3.622 20 O -0.392 6.392 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.248 4.248 24 C 0.506 3.494 25 F -0.144 7.144 26 F -0.144 7.144 27 F -0.142 7.142 28 N 0.019 4.981 29 O 0.072 5.928 30 C -0.184 4.184 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.215 0.785 38 H 0.080 0.920 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.565 -10.905 -10.697 15.943 hybrid contribution 0.312 0.558 -0.382 0.745 sum 4.877 -10.346 -11.080 15.925 Atomic orbital electron populations 1.69453 1.05044 1.25017 1.57056 1.24700 0.95584 0.97551 1.02513 0.86005 0.78663 0.83546 0.77278 1.20504 1.21775 1.21776 1.19049 0.90286 0.81784 1.43411 0.90201 1.46575 1.01639 0.98570 1.84326 1.23778 0.87444 0.95355 0.88770 0.82876 1.23058 0.95232 0.98267 1.01276 1.22874 0.97677 0.97652 0.98452 1.23186 0.96191 0.87076 0.91893 0.89090 1.22889 0.93191 0.99038 0.82939 0.89690 1.46016 1.41132 1.35049 1.10758 1.16442 0.82004 0.82982 0.80735 1.90874 1.33489 1.32299 1.82539 1.24683 0.95572 0.92972 0.98868 1.22639 0.99608 1.02328 0.89805 1.23401 1.02997 1.01028 0.97418 1.16569 0.74818 0.74845 0.83121 1.93281 1.71560 1.75823 1.73724 1.93264 1.34016 1.92854 1.94291 1.93256 1.94351 1.31523 1.95037 1.73843 1.16223 1.16562 0.91453 1.85085 1.40476 1.43864 1.23335 1.23490 0.94584 0.98461 1.01866 0.93505 0.92532 0.93205 0.92869 0.92230 0.75303 0.78541 0.92028 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.78 10.46 55.49 0.58 -24.20 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.39 10.59 -15.06 -0.16 -5.55 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.59 -13.02 2.99 -145.81 -0.44 -13.45 16 10 C 0.15 3.24 4.72 -62.83 -0.30 2.95 16 11 H 0.15 3.79 5.52 -51.93 -0.29 3.51 16 12 C -0.14 -2.53 6.44 -24.24 -0.16 -2.69 16 13 C -0.13 -2.08 6.44 -24.21 -0.16 -2.23 16 14 C 0.13 2.20 5.04 -62.77 -0.32 1.88 16 15 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.12 2.05 2.73 -65.44 -0.18 1.88 16 17 H 0.09 1.35 7.37 -51.93 -0.38 0.96 16 18 N -0.68 -10.31 5.09 -52.44 -0.27 -10.57 16 19 C 0.60 8.73 7.81 -12.48 -0.10 8.63 16 20 O -0.52 -8.66 16.64 5.29 0.09 -8.57 16 21 C -0.06 -0.70 7.29 -36.31 -0.26 -0.96 16 22 C -0.12 -1.34 10.65 -38.95 -0.41 -1.75 16 23 C -0.09 -1.06 6.63 -82.17 -0.54 -1.60 16 24 C 0.56 5.88 3.56 36.01 0.13 6.01 16 25 F -0.16 -1.75 17.30 2.25 0.04 -1.71 16 26 F -0.16 -1.81 17.27 2.25 0.04 -1.77 16 27 F -0.16 -1.53 17.08 2.25 0.04 -1.49 16 28 N -0.29 -3.81 12.00 33.52 0.40 -3.41 16 29 O 0.16 2.04 11.04 15.57 0.17 2.21 16 30 C -0.14 -2.66 6.22 -24.26 -0.15 -2.81 16 31 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 34 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 6.08 8.45 -40.82 -0.34 5.73 16 37 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 39 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -27.40 345.74 -5.74 -33.14 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.88 Total: 5.37 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.70 Total: 3.44 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.28 Total: -51.64 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: 0.26 Total: -6.36 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.12 Total: -4.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.40 -5.74 -33.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097271788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.211 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds