Wall clock time and date at job start Wed Apr 1 2020 03:13:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35937 * 116.99717 * 2 1
4 4 C 1.38746 * 119.98699 * 179.97438 * 3 2 1
5 5 C 1.38069 * 120.01298 * 179.97438 * 4 3 2
6 6 C 1.38833 * 119.98410 * 359.97271 * 5 4 3
7 7 N 1.40330 * 120.00715 * 180.02562 * 6 5 4
8 8 N 1.40595 * 127.40349 * 325.00864 * 7 6 5
9 9 N 1.28905 * 106.84882 * 179.97438 * 8 7 6
10 10 N 1.28411 * 110.40186 * 359.72325 * 9 8 7
11 11 C 1.31573 * 110.51280 * 0.45787 * 10 9 8
12 12 S 1.76197 * 126.47899 * 179.81633 * 11 10 9
13 13 C 1.81002 * 100.00219 * 359.69407 * 12 11 10
14 14 C 1.52994 * 109.47514 * 180.02562 * 13 12 11
15 15 H 1.09008 * 109.46970 * 304.99831 * 14 13 12
16 16 C 1.47205 * 109.47251 * 64.99464 * 14 13 12
17 17 N 8.78459 * 72.87167 * 349.55633 * 2 1 3
18 18 C 1.52997 * 109.47404 * 184.99880 * 14 13 12
19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13
20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14
21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14
22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18
24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19
25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19
26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19
27 27 C 1.38826 * 119.98143 * 0.27946 * 6 5 4
28 28 C 1.38065 * 119.98929 * 359.46797 * 27 6 5
29 29 H 1.08997 * 109.47485 * 300.00187 * 1 2 3
30 30 H 1.09006 * 109.47043 * 60.00195 * 1 2 3
31 31 H 1.09001 * 109.47437 * 180.02562 * 1 2 3
32 32 H 1.08004 * 119.99231 * 359.97438 * 4 3 2
33 33 H 1.07998 * 120.00744 * 179.97438 * 5 4 3
34 34 H 1.09001 * 109.46827 * 59.99361 * 13 12 11
35 35 H 1.09009 * 109.46789 * 300.00025 * 13 12 11
36 36 H 1.09002 * 109.47153 * 54.99686 * 18 14 13
37 37 H 1.09001 * 109.46832 * 294.99876 * 18 14 13
38 38 H 0.97002 * 119.99739 * 180.02562 * 22 21 19
39 39 H 1.07999 * 120.00276 * 179.70082 * 27 6 5
40 40 H 1.07999 * 119.99868 * 180.23005 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2112 0.0000
4 6 3.4317 1.2836 0.0005
5 6 4.0590 2.5136 0.0000
6 6 3.3030 3.6780 -0.0016
7 7 3.9401 4.9283 -0.0027
8 7 5.1427 5.2746 0.6379
9 7 5.3607 6.5179 0.3767
10 7 4.4254 6.9900 -0.3657
11 6 3.5283 6.0625 -0.6227
12 16 2.0712 6.2551 -1.5946
13 6 2.2281 7.9988 -2.0542
14 6 1.0387 8.4053 -2.9265
15 1 0.9703 7.7346 -3.7830
16 6 -0.2006 8.3206 -2.1367
17 7 -1.1582 8.2559 -1.5217
18 6 1.2336 9.8412 -3.4175
19 6 0.1258 10.1996 -4.3744
20 1 -0.6407 9.4757 -4.6085
21 6 0.0904 11.4519 -4.9500
22 7 -0.8765 11.7648 -5.7847
23 14 1.4159 12.7041 -4.5444
24 1 2.5385 12.5660 -5.5068
25 1 0.8488 14.0733 -4.6388
26 1 1.9141 12.4685 -3.1655
27 6 1.9167 3.6051 0.0031
28 6 1.2903 2.3747 -0.0016
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0277 0.0005
32 1 4.0196 0.3776 0.0014
33 1 5.1375 2.5698 0.0008
34 1 3.1541 8.1461 -2.6100
35 1 2.2438 8.6120 -1.1531
36 1 2.1941 9.9241 -3.9261
37 1 1.2131 10.5221 -2.5665
38 1 -0.9013 12.6457 -6.1900
39 1 1.3283 4.5107 0.0067
40 1 0.2118 2.3178 -0.0017
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000024086125.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:13:03
Heat of formation + Delta-G solvation = 134.693531 kcal
Electronic energy + Delta-G solvation = -25808.087200 eV
Core-core repulsion = 21945.772082 eV
Total energy + Delta-G solvation = -3862.315119 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 345.100 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-43.22623 -40.74043 -38.40840 -37.02782 -34.90718 -34.17669 -32.62339 -32.34706
-31.77040 -30.04365 -28.56395 -27.85236 -25.34493 -24.31178 -24.04488 -22.62212
-22.10063 -21.67864 -19.28764 -18.62344 -17.71582 -17.26526 -17.06647 -16.83196
-16.43616 -16.27272 -15.50593 -15.12583 -14.57762 -14.37266 -14.20969 -14.05076
-13.84210 -13.81685 -13.52551 -13.10409 -13.03961 -12.63454 -12.60290 -12.53242
-12.29754 -12.16800 -11.81076 -11.57855 -11.47587 -11.40497 -11.30817 -11.17227
-10.91698 -10.79786 -10.55529 -10.06527 -9.93220 -9.70618 -9.46338 -8.75766
-8.69873 -8.19921 -6.19336 -4.21848 0.06575 0.43332 0.64945 1.07079
1.64194 1.76822 1.95984 2.66970 3.01736 3.21368 3.26703 3.30971
3.32843 3.35410 3.94987 4.17545 4.25615 4.31431 4.34443 4.41842
4.58890 4.65537 4.66590 4.82095 4.88007 4.93868 5.02914 5.06573
5.13742 5.15160 5.19519 5.35932 5.57866 5.63270 5.74865 5.81760
5.88771 5.99065 6.15737 6.73024 6.78153 6.94895 7.49891 8.11005
8.13089 8.29836 8.81976 9.39521 10.93248
Molecular weight = 345.10amu
Principal moments of inertia in cm(-1)
A = 0.014312 B = 0.002598 C = 0.002272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.895118 B =10773.631874 C =12322.649072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 O -0.311 6.311
3 C 0.144 3.856
4 C -0.135 4.135
5 C -0.052 4.052
6 C 0.085 3.915
7 N -0.313 5.313
8 N -0.081 5.081
9 N -0.027 5.027
10 N -0.325 5.325
11 C 0.220 3.780
12 S 0.040 5.960
13 C -0.109 4.109
14 C 0.034 3.966
15 H 0.120 0.880
16 C 0.228 3.772
17 N -0.445 5.445
18 C 0.001 3.999
19 C -0.533 4.533
20 H 0.076 0.924
21 C 0.075 3.925
22 N -0.893 5.893
23 Si 0.875 3.125
24 H -0.273 1.273
25 H -0.286 1.286
26 H -0.262 1.262
27 C -0.067 4.067
28 C -0.185 4.185
29 H 0.060 0.940
30 H 0.062 0.938
31 H 0.104 0.896
32 H 0.146 0.854
33 H 0.145 0.855
34 H 0.124 0.876
35 H 0.110 0.890
36 H 0.041 0.959
37 H 0.031 0.969
38 H 0.266 0.734
39 H 0.145 0.855
40 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.368 -23.606 10.720 26.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.224 6.224
3 C 0.097 3.903
4 C -0.154 4.154
5 C -0.073 4.073
6 C -0.007 4.007
7 N -0.105 5.105
8 N -0.067 5.067
9 N -0.022 5.022
10 N -0.180 5.180
11 C -0.163 4.163
12 S 0.268 5.732
13 C -0.259 4.259
14 C 0.010 3.990
15 H 0.138 0.862
16 C -0.090 4.090
17 N -0.121 5.121
18 C -0.039 4.039
19 C -0.571 4.571
20 H 0.094 0.906
21 C -0.129 4.129
22 N -0.531 5.531
23 Si 0.702 3.298
24 H -0.198 1.198
25 H -0.212 1.212
26 H -0.186 1.186
27 C -0.089 4.089
28 C -0.204 4.204
29 H 0.078 0.922
30 H 0.080 0.920
31 H 0.122 0.878
32 H 0.164 0.836
33 H 0.163 0.837
34 H 0.142 0.858
35 H 0.128 0.872
36 H 0.059 0.941
37 H 0.049 0.951
38 H 0.076 0.924
39 H 0.162 0.838
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 6.346 -24.003 11.874 27.521
hybrid contribution 0.945 1.419 -0.105 1.709
sum 7.291 -22.583 11.770 26.490
Atomic orbital electron populations
1.23193 0.77556 1.04572 1.01968 1.86112 1.22068 1.26260 1.87951
1.19175 0.92371 0.84510 0.94220 1.20326 0.91438 0.98116 1.05534
1.20801 1.00691 0.89424 0.96367 1.17391 0.91288 0.81210 1.10796
1.48669 1.17910 1.08447 1.35501 1.82566 0.97392 1.09543 1.17153
1.77865 1.16139 1.01295 1.06882 1.75034 1.01026 1.24935 1.17046
1.28003 1.02811 0.85875 0.99567 1.86138 1.14652 1.16987 1.55397
1.24155 1.04034 0.92134 1.05573 1.18783 0.82313 1.03804 0.94069
0.86185 1.28996 0.94579 0.92316 0.93107 1.81222 1.10637 1.09657
1.10581 1.19701 0.99218 0.87469 0.97533 1.20939 1.10183 1.00339
1.25644 0.90619 1.24956 0.95556 0.98057 0.94291 1.69892 1.32121
1.21606 1.29468 0.86849 0.82198 0.81025 0.79753 1.19839 1.21205
1.18646 1.20945 0.91696 0.99337 0.96896 1.21131 1.00949 0.90819
1.07529 0.92181 0.91968 0.87765 0.83585 0.83715 0.85811 0.87187
0.94125 0.95072 0.92392 0.83783 0.83687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.08 9.81 101.05 0.99 1.08 16
2 O -0.31 -2.19 10.50 -19.54 -0.21 -2.39 16
3 C 0.14 1.09 6.69 -39.21 -0.26 0.83 16
4 C -0.13 -0.98 9.98 -39.46 -0.39 -1.38 16
5 C -0.05 -0.45 9.81 -39.42 -0.39 -0.84 16
6 C 0.09 0.89 6.42 -83.53 -0.54 0.35 16
7 N -0.31 -4.00 3.80 -10.61 -0.04 -4.04 16
8 N -0.08 -1.15 13.74 60.35 0.83 -0.32 16
9 N -0.03 -0.41 13.37 60.35 0.81 0.39 16
10 N -0.32 -4.92 11.57 30.56 0.35 -4.56 16
11 C 0.22 2.95 7.96 -88.91 -0.71 2.24 16
12 S 0.04 0.46 18.95 -107.50 -2.04 -1.57 16
13 C -0.11 -1.39 4.65 37.15 0.17 -1.22 16
14 C 0.03 0.54 2.21 -93.41 -0.21 0.33 16
15 H 0.12 1.71 8.14 -51.92 -0.42 1.28 16
16 C 0.23 4.14 13.32 -20.63 -0.27 3.87 16
17 N -0.44 -8.93 18.56 42.31 0.79 -8.14 16
18 C 0.00 0.02 3.49 -27.88 -0.10 -0.07 16
19 C -0.53 -13.52 9.15 -34.44 -0.32 -13.84 16
20 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16
21 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16
22 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16
23 Si 0.88 19.92 27.47 -169.99 -4.67 15.25 16
24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
26 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16
27 C -0.07 -0.62 8.85 -39.43 -0.35 -0.97 16
28 C -0.18 -1.38 9.03 -39.46 -0.36 -1.73 16
29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16
30 H 0.06 0.20 7.66 -51.93 -0.40 -0.19 16
31 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16
32 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16
33 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16
34 H 0.12 1.41 8.14 -51.92 -0.42 0.99 16
35 H 0.11 1.41 8.14 -51.91 -0.42 0.99 16
36 H 0.04 0.74 7.57 -51.93 -0.39 0.35 16
37 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16
38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
39 H 0.14 1.35 6.20 -52.49 -0.33 1.02 16
40 H 0.15 0.77 6.29 -52.49 -0.33 0.44 16
LS Contribution 366.91 15.07 5.53 5.53
Total: -1.00 -32.29 366.91 -5.02 -37.31
By element:
Atomic # 1 Polarization: 1.58 SS G_CDS: -4.33 Total: -2.76 kcal
Atomic # 6 Polarization: -6.62 SS G_CDS: -2.82 Total: -9.44 kcal
Atomic # 7 Polarization: -45.44 SS G_CDS: 3.51 Total: -41.93 kcal
Atomic # 8 Polarization: -2.19 SS G_CDS: -0.21 Total: -2.39 kcal
Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal
Atomic # 16 Polarization: 0.46 SS G_CDS: -2.04 Total: -1.57 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -32.29 -5.02 -37.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000024086125.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 172.007 kcal
(2) G-P(sol) polarization free energy of solvation -32.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.718 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) 134.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds