Wall clock time and date at job start Wed Apr 1 2020 03:13:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35937 * 116.99717 * 2 1
4 4 C 1.38746 * 119.98699 * 179.97438 * 3 2 1
5 5 C 1.38069 * 120.01298 * 179.97438 * 4 3 2
6 6 C 1.38833 * 119.98410 * 359.97271 * 5 4 3
7 7 N 1.40330 * 120.00715 * 180.02562 * 6 5 4
8 8 N 1.40595 * 127.40349 * 325.00864 * 7 6 5
9 9 N 1.28905 * 106.84882 * 179.97438 * 8 7 6
10 10 N 1.28411 * 110.40186 * 359.72325 * 9 8 7
11 11 C 1.31573 * 110.51280 * 0.45787 * 10 9 8
12 12 S 1.76197 * 126.47899 * 179.81633 * 11 10 9
13 13 C 1.81002 * 100.00219 * 359.69407 * 12 11 10
14 14 C 1.52994 * 109.47514 * 180.02562 * 13 12 11
15 15 H 1.09008 * 109.46970 * 304.99831 * 14 13 12
16 16 C 1.47205 * 109.47251 * 64.99464 * 14 13 12
17 17 N 8.78459 * 72.87167 * 349.55633 * 2 1 3
18 18 C 1.52997 * 109.47404 * 184.99880 * 14 13 12
19 19 C 1.50701 * 109.47212 * 174.99684 * 18 14 13
20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 14
21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 14
22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18
23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18
24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19
25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19
26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19
27 27 C 1.38826 * 119.98143 * 0.27946 * 6 5 4
28 28 C 1.38065 * 119.98929 * 359.46797 * 27 6 5
29 29 H 1.08997 * 109.47485 * 300.00187 * 1 2 3
30 30 H 1.09006 * 109.47043 * 60.00195 * 1 2 3
31 31 H 1.09001 * 109.47437 * 180.02562 * 1 2 3
32 32 H 1.08004 * 119.99231 * 359.97438 * 4 3 2
33 33 H 1.07998 * 120.00744 * 179.97438 * 5 4 3
34 34 H 1.09001 * 109.46827 * 59.99361 * 13 12 11
35 35 H 1.09009 * 109.46789 * 300.00025 * 13 12 11
36 36 H 1.09002 * 109.47153 * 54.99686 * 18 14 13
37 37 H 1.09001 * 109.46832 * 294.99876 * 18 14 13
38 38 H 0.97002 * 119.99739 * 180.02562 * 22 21 19
39 39 H 1.07999 * 120.00276 * 179.70082 * 27 6 5
40 40 H 1.07999 * 119.99868 * 180.23005 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2112 0.0000
4 6 3.4317 1.2836 0.0005
5 6 4.0590 2.5136 0.0000
6 6 3.3030 3.6780 -0.0016
7 7 3.9401 4.9283 -0.0027
8 7 5.1427 5.2746 0.6379
9 7 5.3607 6.5179 0.3767
10 7 4.4254 6.9900 -0.3657
11 6 3.5283 6.0625 -0.6227
12 16 2.0712 6.2551 -1.5946
13 6 2.2281 7.9988 -2.0542
14 6 1.0387 8.4053 -2.9265
15 1 0.9703 7.7346 -3.7830
16 6 -0.2006 8.3206 -2.1367
17 7 -1.1582 8.2559 -1.5217
18 6 1.2336 9.8412 -3.4175
19 6 0.1258 10.1996 -4.3744
20 1 -0.6407 9.4757 -4.6085
21 6 0.0904 11.4519 -4.9500
22 7 -0.8765 11.7648 -5.7847
23 14 1.4159 12.7041 -4.5444
24 1 2.5385 12.5660 -5.5068
25 1 0.8488 14.0733 -4.6388
26 1 1.9141 12.4685 -3.1655
27 6 1.9167 3.6051 0.0031
28 6 1.2903 2.3747 -0.0016
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0277 0.0005
32 1 4.0196 0.3776 0.0014
33 1 5.1375 2.5698 0.0008
34 1 3.1541 8.1461 -2.6100
35 1 2.2438 8.6120 -1.1531
36 1 2.1941 9.9241 -3.9261
37 1 1.2131 10.5221 -2.5665
38 1 -0.9013 12.6457 -6.1900
39 1 1.3283 4.5107 0.0067
40 1 0.2118 2.3178 -0.0017
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000024086125.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:13:02
Heat of formation + Delta-G solvation = 115.290772 kcal
Electronic energy + Delta-G solvation = -25808.928567 eV
Core-core repulsion = 21945.772082 eV
Total energy + Delta-G solvation = -3863.156485 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 345.100 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-44.24238 -41.32128 -39.03235 -38.46700 -35.79591 -35.70728 -34.24178 -33.58677
-32.41751 -30.72663 -30.15426 -28.30035 -26.38672 -25.48916 -24.95592 -23.56066
-23.25875 -22.83957 -20.10498 -19.23910 -18.94097 -18.69455 -18.29355 -18.00763
-17.13590 -16.79364 -16.72630 -15.94708 -15.75660 -15.45967 -15.25517 -15.02305
-14.69720 -14.61966 -14.53289 -14.38395 -14.29164 -14.02877 -13.84852 -13.51284
-13.28559 -13.10261 -13.04314 -12.76914 -12.71497 -12.50246 -12.22994 -12.14431
-12.07845 -11.97895 -11.75117 -11.69163 -11.45086 -11.35187 -10.71378 -10.32397
-9.47014 -9.06728 -8.23472 -6.28978 -0.80268 -0.54510 0.03774 0.26994
0.66995 0.85328 0.88629 1.45351 1.48562 1.57327 1.82996 1.86468
2.21645 2.37586 2.42231 2.98557 3.08121 3.15465 3.49008 3.60279
3.67096 3.68687 3.90585 3.98780 4.05950 4.20549 4.26043 4.38589
4.39848 4.41976 4.54314 4.59280 4.73159 4.77498 4.82479 5.02752
5.09145 5.16221 5.20970 5.38189 5.45664 5.63088 6.22935 6.24822
6.66282 6.80032 7.07878 7.35765 8.92819
Molecular weight = 345.10amu
Principal moments of inertia in cm(-1)
A = 0.014312 B = 0.002598 C = 0.002272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.895118 B =10773.631874 C =12322.649072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 O -0.321 6.321
3 C 0.147 3.853
4 C -0.133 4.133
5 C -0.052 4.052
6 C 0.054 3.946
7 N -0.304 5.304
8 N -0.088 5.088
9 N -0.048 5.048
10 N -0.341 5.341
11 C 0.211 3.789
12 S 0.076 5.924
13 C -0.111 4.111
14 C 0.042 3.958
15 H 0.138 0.862
16 C 0.238 3.762
17 N -0.482 5.482
18 C -0.001 4.001
19 C -0.529 4.529
20 H 0.037 0.963
21 C 0.008 3.992
22 N -0.951 5.951
23 Si 0.939 3.061
24 H -0.258 1.258
25 H -0.298 1.298
26 H -0.237 1.237
27 C -0.072 4.072
28 C -0.182 4.182
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.122 0.878
32 H 0.167 0.833
33 H 0.150 0.850
34 H 0.144 0.856
35 H 0.111 0.889
36 H 0.069 0.931
37 H 0.033 0.967
38 H 0.265 0.735
39 H 0.141 0.859
40 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.671 -25.276 11.471 29.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 O -0.233 6.233
3 C 0.100 3.900
4 C -0.152 4.152
5 C -0.072 4.072
6 C -0.037 4.037
7 N -0.096 5.096
8 N -0.074 5.074
9 N -0.043 5.043
10 N -0.198 5.198
11 C -0.171 4.171
12 S 0.304 5.696
13 C -0.261 4.261
14 C 0.019 3.981
15 H 0.155 0.845
16 C -0.079 4.079
17 N -0.159 5.159
18 C -0.041 4.041
19 C -0.567 4.567
20 H 0.056 0.944
21 C -0.189 4.189
22 N -0.591 5.591
23 Si 0.763 3.237
24 H -0.183 1.183
25 H -0.224 1.224
26 H -0.160 1.160
27 C -0.094 4.094
28 C -0.201 4.201
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.140 0.860
32 H 0.184 0.816
33 H 0.168 0.832
34 H 0.162 0.838
35 H 0.130 0.870
36 H 0.087 0.913
37 H 0.051 0.949
38 H 0.073 0.927
39 H 0.158 0.842
40 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges 7.656 -25.712 12.645 29.659
hybrid contribution 0.384 1.688 -0.332 1.762
sum 8.041 -24.025 12.313 28.168
Atomic orbital electron populations
1.23480 0.75901 1.06131 1.02757 1.86115 1.23814 1.25840 1.87558
1.19326 0.92635 0.84864 0.93214 1.20559 0.91728 0.98319 1.04548
1.20905 1.00964 0.89301 0.96036 1.17729 0.91943 0.80748 1.13279
1.48754 1.17313 1.09052 1.34509 1.82487 0.98310 1.09225 1.17419
1.77833 1.16849 1.01840 1.07756 1.74943 1.01438 1.25793 1.17582
1.28164 1.03073 0.85989 0.99900 1.86049 1.13458 1.15274 1.54825
1.24047 1.03164 0.93445 1.05449 1.18732 0.82335 1.02131 0.94929
0.84452 1.29536 0.94641 0.91321 0.92404 1.81226 1.11833 1.10737
1.12083 1.19650 0.98191 0.89845 0.96432 1.21324 1.10483 0.99223
1.25680 0.94420 1.25922 0.97964 1.00647 0.94359 1.70065 1.34983
1.22231 1.31866 0.85817 0.79431 0.77400 0.81065 1.18302 1.22420
1.15981 1.20976 0.91194 0.99901 0.97320 1.21342 1.02053 0.90096
1.06654 0.91282 0.91246 0.85995 0.81571 0.83240 0.83782 0.87018
0.91291 0.94892 0.92656 0.84181 0.81613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.06 9.81 113.37 1.11 1.17 16
2 O -0.32 -3.69 10.50 -92.84 -0.97 -4.66 16
3 C 0.15 1.89 6.69 22.51 0.15 2.04 16
4 C -0.13 -1.65 9.98 22.35 0.22 -1.42 16
5 C -0.05 -0.81 9.81 22.37 0.22 -0.59 16
6 C 0.05 1.06 6.42 38.06 0.24 1.31 16
7 N -0.30 -7.48 3.80 -187.48 -0.71 -8.20 16
8 N -0.09 -2.47 13.74 37.02 0.51 -1.97 16
9 N -0.05 -1.46 13.37 37.02 0.50 -0.96 16
10 N -0.34 -9.95 11.57 -57.24 -0.66 -10.61 16
11 C 0.21 5.37 7.96 179.75 1.43 6.80 16
12 S 0.08 1.62 18.95 -56.49 -1.07 0.55 16
13 C -0.11 -2.55 4.65 71.98 0.33 -2.22 16
14 C 0.04 1.24 2.21 -12.60 -0.03 1.21 16
15 H 0.14 3.59 8.14 -2.38 -0.02 3.57 16
16 C 0.24 8.43 13.32 89.40 1.19 9.62 16
17 N -0.48 -19.20 18.56 20.05 0.37 -18.83 16
18 C 0.00 -0.03 3.49 29.85 0.10 0.07 16
19 C -0.53 -26.77 9.15 25.60 0.23 -26.53 16
20 H 0.04 2.14 7.84 -2.91 -0.02 2.11 16
21 C 0.01 0.45 5.47 84.66 0.46 0.91 16
22 N -0.95 -56.94 13.96 21.45 0.30 -56.64 16
23 Si 0.94 40.25 27.47 68.60 1.88 42.13 16
24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
25 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16
26 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16
27 C -0.07 -1.22 8.85 22.37 0.20 -1.03 16
28 C -0.18 -2.32 9.03 22.35 0.20 -2.12 16
29 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16
30 H 0.07 0.27 7.66 -2.38 -0.02 0.25 16
31 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16
32 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16
33 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16
34 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16
35 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16
36 H 0.07 2.25 7.57 -2.39 -0.02 2.23 16
37 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16
38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16
39 H 0.14 2.44 6.20 -2.91 -0.02 2.42 16
40 H 0.17 1.32 6.29 -2.91 -0.02 1.30 16
Total: -1.00 -71.46 366.91 7.26 -64.20
By element:
Atomic # 1 Polarization: 4.71 SS G_CDS: 1.04 Total: 5.75 kcal
Atomic # 6 Polarization: -16.85 SS G_CDS: 6.08 Total: -10.77 kcal
Atomic # 7 Polarization: -97.50 SS G_CDS: 0.30 Total: -97.20 kcal
Atomic # 8 Polarization: -3.69 SS G_CDS: -0.97 Total: -4.66 kcal
Atomic # 14 Polarization: 40.25 SS G_CDS: 1.88 Total: 42.13 kcal
Atomic # 16 Polarization: 1.62 SS G_CDS: -1.07 Total: 0.55 kcal
Total: -71.46 7.26 -64.20 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000024086125.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 179.492 kcal
(2) G-P(sol) polarization free energy of solvation -71.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) 115.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds